mRNA_C-australica_Contig_982.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_982.6.1
Unique NamemRNA_C-australica_Contig_982.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: D7FSU2_ECTSI (Gill-specific calpain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.600e-25
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:   28 LYRDAAFPWCATALYRASHEPPRGAAPAESVGWNRVYKLQVRGLHSPSL----ECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            ++ D  FP    +LYR   +PP G  PA  V W R+ + +VR  HSP      E    V QG L + WLVSALN+LA  P ++ +++V      KG+ T+KLFK+GAW Y+H+DD LPC
Sbjct:    1 MFEDPTFPASGDSLYRTPQQPPAGTLPAALVVWGRISQQEVRRCHSPVTFPVDEGLAAVGQGALGDSWLVSALNMLAPLPGVLKKVVVSDRHSDKGVYTLKLFKEGAWRYIHVDDRLPC 119
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BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: A0A6S9I198_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I198_HETAK)

HSP 1 Score: 104 bits (259), Expect = 1.490e-23
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:   28 LYRDAAFPWCATALYRASHEPPRGAAPAESVGWNRVYKLQVRGLHSPSLECSG----GVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            L+ D  F    ++LYR  H+P RG  PA++V WNR+  L+V G  +P     G     V QG L N W VSAL++LA R  L+  ++V  +   +GI T+K FK G WVYVH+DD LPC
Sbjct:   38 LWSDKDFLPDGSSLYRDPHKPFRGGMPADAVEWNRINSLEVAGCDAPKTFLDGTEPGDVVQGALGNCWFVSALSVLASRQMLLRNVIVSDKNAARGIYTLKFFKGGKWVYVHVDDKLPC 156
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BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: A0A7S1XT22_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT22_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.230e-14
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:   19 EQGLYRDAAFPWCATALYRASHEPPRGAAPAESVGWNRVYKLQVRGLHS-PSLECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            E  ++ D AFP  A+++Y ++  PP G  PA  V W R  K+   G      L   G + QG L + W +SAL L+A +P+L+ +L   T     G   ++ FK G W  V +DD LPC
Sbjct:  197 EGSVFSDRAFPAEASSVYASADAPPAGMMPARHVRWLRPEKVLGPGAKLFNELGFFGVLEQGALGDAWFLSALALVAHKPELIRKLFCHTGQEDSGRYCLQFFKGGNWAPVVLDDKLPC 315
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BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: UPI001786A8A0 (calpain-D isoform X2 n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001786A8A0)

HSP 1 Score: 70.9 bits (172), Expect = 8.680e-12
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   13 SDEQGLYRDAAFPWCATALY-RASHEPPRGAAPAESVGWNRVYKLQVRGLHSPS-----LECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            SD   L+ D +FP    +LY   ++  P G      V W R +++   G   P            + QG L N WL+SAL +LA R DLV  +LV  E+  +G   V+L K G W+ V +DD+LPC
Sbjct:  280 SDNNELFVDDSFPPAPKSLYYNPTNSIPDGNP---VVQWRRPHEINFEGGTFPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVREVLVTKEICLQGAYQVRLCKDGKWITVLVDDLLPC 402
[Close]
BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: W8B644_CERCA (Calpain-D n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8B644_CERCA)

HSP 1 Score: 70.9 bits (172), Expect = 8.780e-12
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   13 SDEQGLYRDAAFPWCATALY-RASHEPPRGAAPAESVGWNRVYKLQVRGLHSPS-----LECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            SD   L+ D +FP    +LY   ++  P G      V W R +++   G   P            + QG L N WL+SAL +LA R DLV  +LV  E+  +G   V+L K G W+ V +DD+LPC
Sbjct:  414 SDNNELFVDDSFPPAPKSLYYNPTNSIPDGNP---VVQWRRPHEISCEGGTFPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICLQGAYQVRLCKDGKWITVLVDDLLPC 536
[Close]
BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: L9KYG4_TUPCH (Calpain-15 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=L9KYG4_TUPCH)

HSP 1 Score: 70.9 bits (172), Expect = 8.800e-12
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:  124 WNRVYKLQVRGLHSPSLECS-------GGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            W R Y++   GL    L  S         + QG L N W +SAL +LA RPDLV R++V   L  +G   V+L K G W  V +DD+LPC
Sbjct:  479 WLRPYEISCSGLRDQGLSWSVFHTLRPSDILQGLLGNCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDDMLPC 568
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BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: UPI000FFC2A3C (calpain-15 isoform X1 n=5 Tax=Tupaia chinensis TaxID=246437 RepID=UPI000FFC2A3C)

HSP 1 Score: 70.9 bits (172), Expect = 8.850e-12
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:  124 WNRVYKLQVRGLHSPSLECS-------GGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            W R Y++   GL    L  S         + QG L N W +SAL +LA RPDLV R++V   L  +G   V+L K G W  V +DD+LPC
Sbjct:  560 WLRPYEISCSGLRDQGLSWSVFHTLRPSDILQGLLGNCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDDMLPC 649
[Close]
BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: UPI0008113B90 (calpain-D n=2 Tax=Rhagoletis TaxID=28609 RepID=UPI0008113B90)

HSP 1 Score: 70.9 bits (172), Expect = 8.950e-12
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   13 SDEQGLYRDAAFPWCATALY-RASHEPPRGAAPAESVGWNRVYKLQVRGLHSPS-----LECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            SD   L+ D +FP    +LY   ++  P G      V W R +++   G   P            + QG L N WL+SAL +LA R DLV  +LV  E+  +G   V+L K G W+ V +DD+LPC
Sbjct:  782 SDNNELFVDDSFPPAPKSLYYNPTNSIPDGNP---VVQWRRPHEINFEGGTFPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVREVLVTKEICLQGAYQVRLCKDGKWITVLVDDLLPC 904
[Close]
BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: W8B1X7_CERCA (Calpain-D n=4 Tax=Ceratitis capitata TaxID=7213 RepID=W8B1X7_CERCA)

HSP 1 Score: 70.9 bits (172), Expect = 8.960e-12
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   13 SDEQGLYRDAAFPWCATALY-RASHEPPRGAAPAESVGWNRVYKLQVRGLHSPS-----LECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            SD   L+ D +FP    +LY   ++  P G      V W R +++   G   P            + QG L N WL+SAL +LA R DLV  +LV  E+  +G   V+L K G W+ V +DD+LPC
Sbjct:  817 SDNNELFVDDSFPPAPKSLYYNPTNSIPDGNP---VVQWRRPHEISCEGGTFPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICLQGAYQVRLCKDGKWITVLVDDLLPC 939
[Close]
BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Match: A0A6J0RNV8_BACDO (calpain-D isoform X4 n=3 Tax=Dacini TaxID=43871 RepID=A0A6J0RNV8_BACDO)

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-11
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   13 SDEQGLYRDAAFPWCATALY-RASHEPPRGAAPAESVGWNRVYKLQVRGLHSPS-----LECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHKGICTVKLFKQGAWVYVHIDDVLPC 372
            SD   L+ D +FP    +LY   ++  P G      V W R +++   G   P            + QG L N WL+SAL +LA R DLV  +LV  E+  +G   V+L K G W+ V +DD+LPC
Sbjct:  426 SDNNELFVDDSFPPAPKSLYYNPTNSIPDGNP---VVQWRRPHEISCEGGVFPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVREVLVTKEICLQGAYQVRLCKDGKWITVLVDDLLPC 548
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_982.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSU2_ECTSI2.600e-2543.70Gill-specific calpain n=1 Tax=Ectocarpus siliculos... [more]
A0A6S9I198_HETAK1.490e-2344.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XT22_9STRA8.230e-1436.13Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
UPI001786A8A08.680e-1235.71calpain-D isoform X2 n=1 Tax=Rhagoletis pomonella ... [more]
W8B644_CERCA8.780e-1235.71Calpain-D n=2 Tax=Ceratitis capitata TaxID=7213 Re... [more]
L9KYG4_TUPCH8.800e-1241.11Calpain-15 n=1 Tax=Tupaia chinensis TaxID=246437 R... [more]
UPI000FFC2A3C8.850e-1241.11calpain-15 isoform X1 n=5 Tax=Tupaia chinensis Tax... [more]
UPI0008113B908.950e-1235.71calpain-D n=2 Tax=Rhagoletis TaxID=28609 RepID=UPI... [more]
W8B1X7_CERCA8.960e-1235.71Calpain-D n=4 Tax=Ceratitis capitata TaxID=7213 Re... [more]
A0A6J0RNV8_BACDO1.200e-1135.71calpain-D isoform X4 n=3 Tax=Dacini TaxID=43871 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_982contigC-australica_Contig_982:11831..12679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009033135.1
Preferred nameCAPN15
PFAMsPeptidase_C2,zf-RanBP
Model size372
Max annot lvl2759|Eukaryota
KEGG koko:K08574,ko:K08582
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006508,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009889,GO:0010468,GO:0010556,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Exons5
Evalue4.79e-31
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota
Descriptioncalcium-dependent cysteine-type endopeptidase activity
Cds size372
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588849.6970787-CDS-C-australica_Contig_982:11830..118691682588849.6970787-CDS-C-australica_Contig_982:11830..11869Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 11831..11869 -
1682588849.711741-CDS-C-australica_Contig_982:12009..121271682588849.711741-CDS-C-australica_Contig_982:12009..12127Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 12010..12127 -
1682588849.7245765-CDS-C-australica_Contig_982:12235..122961682588849.7245765-CDS-C-australica_Contig_982:12235..12296Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 12236..12296 -
1682588849.7326782-CDS-C-australica_Contig_982:12454..125441682588849.7326782-CDS-C-australica_Contig_982:12454..12544Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 12455..12544 -
1682588849.7413669-CDS-C-australica_Contig_982:12615..126791682588849.7413669-CDS-C-australica_Contig_982:12615..12679Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 12616..12679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_982.6.1prot_C-australica_Contig_982.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_982 11831..12679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_982.6.1

>prot_C-australica_Contig_982.6.1 ID=prot_C-australica_Contig_982.6.1|Name=mRNA_C-australica_Contig_982.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=124bp
LRRHSDEQGLYRDAAFPWCATALYRASHEPPRGAAPAESVGWNRVYKLQV
RGLHSPSLECSGGVRQGCLQNRWLVSALNLLAGRPDLVARLLVGTELVHK
GICTVKLFKQGAWVYVHIDDVLPC
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mRNA from alignment at C-australica_Contig_982:11831..12679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_982.6.1 ID=mRNA_C-australica_Contig_982.6.1|Name=mRNA_C-australica_Contig_982.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=849bp|location=Sequence derived from alignment at C-australica_Contig_982:11831..12679- (Chrysoparadoxa australica CS_1217)
CTCCGTCGTCACAGCGACGAGCAAGGCTTGTATAGAGATGCTGCGTTCCC
TTGGTGTGCAACAGGTTGACTCCTGGCCTGTTTATCCCAGCATCTACAAC
CAGGACAGGCCCCTCCTGATATACTTTGCCTGCAGCTCTCTACAGGGCGT
CTCATGAGCCGCCCAGAGGTGCTGCACCTGCCGAATCAGTTGGATGGAAT
CGGGTTTATAAGCTGCAAGTGAGAGGTGATAGACTAAACGCATGCATATG
ATGAATGAGGGCGGATAGATATTGAATCATAAACTTTTAGATGGGCTGTC
TGGTGCTCAGATGAAGGAAAGAGCGAAGAAGCAATTCAGTTGCCACATGG
AGGTAGGTCATTTAGCTTGTGATGTCACCACAGGACTACACAGCCCAAGC
TTGGAGTGCTCAGGTGGGGTCAGGCAGGGTTGTCTGCAGAATAGGTGAGA
TAGGCTCTGATGCTTTCAAATCAGCACTGGCAGCCTCTCTGAGCTGCTTC
CTCTCGTGGAGTCACACAGCCTCAATAAATGTCACTTGTTTAAACACTTC
AGGTGGCTCGTATCTGCCTTGAATTTGCTCGCCGGCCGGCCAGATTTAGT
AGCCAGGCTGCTGGTTGGCACCGAGCTTGTCCACAAAGGCATTTGCACCG
TCAAGCTGTTCAAACAAGGGGTACGTTGCAGCTTAGGCCAGGGCTTTGCT
GCCTCAAGCTCACTCCATGCATGCGCTTCTGGTTTACAACGCAGCTGACT
ACTTCTTCAGAGCACATATATCCCACCTCAGGTCAGGCCTTGTTCTTCCA
CCTCCCTCAGGCTTGGGTATACGTACATATCGATGATGTCCTGCCCTGC
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Coding sequence (CDS) from alignment at C-australica_Contig_982:11831..12679-

>mRNA_C-australica_Contig_982.6.1 ID=mRNA_C-australica_Contig_982.6.1|Name=mRNA_C-australica_Contig_982.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=372bp|location=Sequence derived from alignment at C-australica_Contig_982:11831..12679- (Chrysoparadoxa australica CS_1217)
CTCCGTCGTCACAGCGACGAGCAAGGCTTGTATAGAGATGCTGCGTTCCC
TTGGTGTGCAACAGCTCTCTACAGGGCGTCTCATGAGCCGCCCAGAGGTG
CTGCACCTGCCGAATCAGTTGGATGGAATCGGGTTTATAAGCTGCAAGTG
AGAGGACTACACAGCCCAAGCTTGGAGTGCTCAGGTGGGGTCAGGCAGGG
TTGTCTGCAGAATAGGTGGCTCGTATCTGCCTTGAATTTGCTCGCCGGCC
GGCCAGATTTAGTAGCCAGGCTGCTGGTTGGCACCGAGCTTGTCCACAAA
GGCATTTGCACCGTCAAGCTGTTCAAACAAGGGGCTTGGGTATACGTACA
TATCGATGATGTCCTGCCCTGC
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