mRNA_C-australica_Contig_982.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_982.5.1
Unique NamemRNA_C-australica_Contig_982.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_982.5.1 vs. uniprot
Match: A0A6S9I198_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I198_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 1.070e-16
Identity = 70/275 (25.45%), Postives = 126/275 (45.82%), Query Frame = 1 
Query:   37 FWMTYEDFCSCFTRVWTCFTEPASPSSTTPCLEALSHKDYHGSWMPGHPTAGAGGGPRHSTFLTNPHYPINVEHNDTYMRVSLDRVDRMWGHNPSSVYIPA-GFILVRLKGIKPRLTRYHPSKVAATSGCLMNGPHLTAEMVLASGRYAIVPFTRE-----------PLQRPESFKLSVAARGVVEWEQVDEDDEDILMSDDE----------GKWEEKELPLLH--ERLALEDDS-------RLIDTVHKQVAELAQLVEMMRSEVKLKDAAVA 768
            FW+ +E+FC  + +V+ C   P   S             Y G W+PG   +GAGG P+++TF TNP Y  +VE   T +   + + D  W    +  Y  A G++L++L G   R+ ++ P ++A  S        +  +  L  GRYA++P T +            +   +   L      V + + ++E++E+ L ++ +          G+ +   LP  H  E L  E+D          ++++ +QVA+LA LV  ++ ++K  +  VA
Sbjct:  336 FWIEWEEFCREYNQVFVCVDFPEGGSGVR----------YRGQWVPGDGKSGAGGSPKYATFPTNPQYTFSVEEAGTKVVGMVSQKDLRWQVAATEKYTTAIGYVLMKLSGNTSRVKKFTPKQMAGMSRTYSPSRSIAGQATLLPGRYAMIPTTFDNNASAAIDYIMEIYTDKPITLEQEGDAVADLDDLEEEEEEELAAEGKAADAVSEEKAGEGDRAALPPGHMAEDLEAEEDDDDESPDHMALESLQRQVADLAGLVVALQGDIKGLEGTVA 600
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_982.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6S9I198_HETAK1.070e-1625.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_982contigC-australica_Contig_982:8387..10353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSU2
PFAMsCalpain_III,EF-hand_5,EF-hand_7,EF-hand_8,Peptidase_C2,WW
Model size913
Max annot lvl2759|Eukaryota
KEGG koko:K08574,ko:K08579
Hectar predicted targeting categoryother localisation
Exons8
Evalue4.08e-35
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota
Descriptioncalcium-dependent cysteine-type endopeptidase activity
Cds size777
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_982.5.1prot_C-australica_Contig_982.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_982 8481..10126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588849.5608876-UTR-C-australica_Contig_982:8386..84801682588849.5608876-UTR-C-australica_Contig_982:8386..8480Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 8387..8480 -
1682588849.6533194-UTR-C-australica_Contig_982:10126..101361682588849.6533194-UTR-C-australica_Contig_982:10126..10136Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 10127..10136 -
1682588849.6656559-UTR-C-australica_Contig_982:10321..103531682588849.6656559-UTR-C-australica_Contig_982:10321..10353Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 10322..10353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588849.5733445-CDS-C-australica_Contig_982:8480..87051682588849.5733445-CDS-C-australica_Contig_982:8480..8705Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 8481..8705 -
1682588849.583407-CDS-C-australica_Contig_982:8845..89271682588849.583407-CDS-C-australica_Contig_982:8845..8927Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 8846..8927 -
1682588849.593209-CDS-C-australica_Contig_982:9017..90731682588849.593209-CDS-C-australica_Contig_982:9017..9073Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 9018..9073 -
1682588849.6031764-CDS-C-australica_Contig_982:9379..94701682588849.6031764-CDS-C-australica_Contig_982:9379..9470Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 9380..9470 -
1682588849.613362-CDS-C-australica_Contig_982:9599..96411682588849.613362-CDS-C-australica_Contig_982:9599..9641Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 9600..9641 -
1682588849.6237388-CDS-C-australica_Contig_982:9715..98481682588849.6237388-CDS-C-australica_Contig_982:9715..9848Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 9716..9848 -
1682588849.6348119-CDS-C-australica_Contig_982:9978..101261682588849.6348119-CDS-C-australica_Contig_982:9978..10126Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 9979..10126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_982.5.1

>prot_C-australica_Contig_982.5.1 ID=prot_C-australica_Contig_982.5.1|Name=mRNA_C-australica_Contig_982.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=259bp
MTYEDFCSCFTRVWTCFTEPASPSSTTPCLEALSHKDYHGSWMPGHPTAG
AGGGPRHSTFLTNPHYPINVEHNDTYMRVSLDRVDRMWGHNPSSVYIPAG
FILVRLKGIKPRLTRYHPSKVAATSGCLMNGPHLTAEMVLASGRYAIVPF
TREPLQRPESFKLSVAARGVVEWEQVDEDDEDILMSDDEGKWEEKELPLL
HERLALEDDSRLIDTVHKQVAELAQLVEMMRSEVKLKDAAVAAQTGEGVK
YSFRCKDI*
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mRNA from alignment at C-australica_Contig_982:8387..10353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_982.5.1 ID=mRNA_C-australica_Contig_982.5.1|Name=mRNA_C-australica_Contig_982.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1967bp|location=Sequence derived from alignment at C-australica_Contig_982:8387..10353- (Chrysoparadoxa australica CS_1217)
GTGAAGGCCAAGCGCCAGGCTCAACCAGAGAGGTATGAGCAGGGCAGCCT
AGGTGCTAAGGCCAAAGGTCACTCTTGGTGCAAGCAGATGGAATGAGATG
GGTTGGCACTAGCATAAGCCTTATCCCTTTGGGGCCAGGTGTGTTATTAC
ACCTTGTCGGCCTTCTGAAGCTCACAGCCTGTTTCCTGTCCCCTTGTCCC
CCTTTGTATTGCCAGAGGACCTTCTGGATGACCTATGAAGACTTCTGCAG
CTGCTTCACGCGCGTGTGGACTTGCTTCACTGAGCCTGCTAGCCCCTCCA
GCACGACTCCATGCCTTGAAGCTCTCAGTCACAAAGATTATCATGGAAGC
TGGATGCCTGGCCACCCAACTGCCGGTGAGAAGACGAGAGCTGCATCGAT
AGCGATAGCGATAGCATGGACCTCCGATTCAGATTCAGCAGTGCAGTTGC
CTTTTGCCCTCATTCATTGCCTCACCACTGCTCATGACATCCTTCACTGT
CACAGGAGCCGGAGGTGGCCCTCGCCACAGTACCTTCCTCACCAACCCGC
ACTACCCAATCAATGTTGAGCACAATGATACGTACATGAGGGTATCGCTT
GATAGGGTCGATAGGATGTGGGGTCACAATCCCTCCAGGTACGATTAAAA
AAACTAAGACCAGACTTACTGTGCTGTCGAATATGTCTAAATGTTTTCGA
TCCCAACCACAGCGTGTACATTCCTGCGGGCTTTATACTTGTGAGATTGA
AGGGGTGCGTAATGCTAGCTCATCTACTCCTCTACCTTTCCTCTCCTCCG
AGACTGAGACTTCCTTAGGTCACGATGGCACTGCTAGATGACGAAGATCC
ACAATTTATCTTACGTGCCACTCCTCTCTACAGGATTAAACCACGCTTGA
CTCGATACCACCCCAGTAAAGTGGCTGCTACAAGTGGTTGCCTCATGAAC
GGTCCTCACCTCACTGCTGAGATGGTGGGTCAACCAGATCACTGCCAGAT
CACTGCCAGATCAGTCCATAACACCAAGCTGATCACCGCCCTCATGCGTT
TGTACTAAGCCTAACCTCTGCCTTTGACTAGCCCTGATGACCTTGGCTTG
CTAACTCCAGACTTGCTCCACTTGTTATACCTGTATCCATCCTCCAATAT
ATGACATAGCCTGTGAACTCTTTCGTAAGCCTTCATTTAATCATTGCTTA
ACTAATGATGCCCCCTTCTGCCCCCTTACATTCAGCTGCTCAAACTTACC
CCTTAATCTTCTCTTCTCCCCCCAACCCAGGTCCTGGCAAGCGGCCGATA
TGCAATAGTGCCCTTTACCAGGGAGCCACTCCAAAGGTATTATGCCTACC
AGCTTGACACGTATCCACACTGCTGCTGCAATAAGTGAGTGATGCAATGG
ACCCCATGCTCCCCGCCATTATCCAGACCGGAGAGCTTCAAATTGAGCGT
TGCAGCAAGAGGCGTTGTTGAATGGGAGCAGGTTGATGAAGATGATGAGG
ACATACTGGTACATCTTCACCTCGTGTCAACAAATGCTTTGACTTGCTAC
CTCCTCCTTCATCCTTCTTTTCTTACTTGTACTAACTAGAAGTCCTGCCA
CCTTCAGCTCTCCCTCCCTAATCACATGCCTGCTCCCTTGTCCTCCAGAT
GAGTGATGATGAGGGTAAATGGGAGGAGAAAGAGCTGCCACTGCTGCACG
AGAGGCTAGCGCTGGAGGACGACAGCCGTCTGATAGATACCGTTCACAAG
CAAGTGGCAGAGCTGGCACAGCTTGTGGAGATGATGCGGAGTGAGGTGAA
GCTCAAGGATGCAGCTGTTGCTGCTCAAACAGGGGAGGGGGTTAAGTACT
CATTCAGGTGTAAAGATATATAACCTCCCTGAGATTTTTTCCTAGTGAGA
CAAGAGGACTCGCTGTAACTAAGCAGAGCAGGTGCATGCAGCAATGAAAC
ACTGCCTCTTGTGATGA
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Coding sequence (CDS) from alignment at C-australica_Contig_982:8387..10353-

>mRNA_C-australica_Contig_982.5.1 ID=mRNA_C-australica_Contig_982.5.1|Name=mRNA_C-australica_Contig_982.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=777bp|location=Sequence derived from alignment at C-australica_Contig_982:8387..10353- (Chrysoparadoxa australica CS_1217)
ATGACCTATGAAGACTTCTGCAGCTGCTTCACGCGCGTGTGGACTTGCTT
CACTGAGCCTGCTAGCCCCTCCAGCACGACTCCATGCCTTGAAGCTCTCA
GTCACAAAGATTATCATGGAAGCTGGATGCCTGGCCACCCAACTGCCGGA
GCCGGAGGTGGCCCTCGCCACAGTACCTTCCTCACCAACCCGCACTACCC
AATCAATGTTGAGCACAATGATACGTACATGAGGGTATCGCTTGATAGGG
TCGATAGGATGTGGGGTCACAATCCCTCCAGCGTGTACATTCCTGCGGGC
TTTATACTTGTGAGATTGAAGGGGATTAAACCACGCTTGACTCGATACCA
CCCCAGTAAAGTGGCTGCTACAAGTGGTTGCCTCATGAACGGTCCTCACC
TCACTGCTGAGATGGTCCTGGCAAGCGGCCGATATGCAATAGTGCCCTTT
ACCAGGGAGCCACTCCAAAGACCGGAGAGCTTCAAATTGAGCGTTGCAGC
AAGAGGCGTTGTTGAATGGGAGCAGGTTGATGAAGATGATGAGGACATAC
TGATGAGTGATGATGAGGGTAAATGGGAGGAGAAAGAGCTGCCACTGCTG
CACGAGAGGCTAGCGCTGGAGGACGACAGCCGTCTGATAGATACCGTTCA
CAAGCAAGTGGCAGAGCTGGCACAGCTTGTGGAGATGATGCGGAGTGAGG
TGAAGCTCAAGGATGCAGCTGTTGCTGCTCAAACAGGGGAGGGGGTTAAG
TACTCATTCAGGTGTAAAGATATATAA
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