mRNA_C-australica_Contig_982.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_982.1.1
Unique NamemRNA_C-australica_Contig_982.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: A0A6J2TQ95_DROLE (Dynactin subunit 6 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2TQ95_DROLE)

HSP 1 Score: 110 bits (274), Expect = 3.880e-24
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  101 AEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN--------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
            AE ++ I    +V EE+ + G++ I  GC+VHP  TI+++    I+ GE+C+VEE A I +        ++S  + IGA N+FEVGC V +A+IGD N F+ KC +G  V V  GC VGAG+ L         T++Y
Sbjct:    3 AESDIKIMPKSVVCEESTLNGDITISSGCVVHPSATIIAEA--PIVLGENCIVEEYATIAHRLKDGAASDASNTLHIGANNVFEVGCTVEAARIGDKNVFESKCFVGSGVTVSSGCVVGAGIQLRTAQVLPENTIVY 137          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: B4M940_DROVI (Dynactin subunit 6 n=8 Tax=Drosophila TaxID=32281 RepID=B4M940_DROVI)

HSP 1 Score: 107 bits (267), Expect = 3.510e-23
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  104 EDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED--------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
            E+ + I    +V EE+ ++G++    GC+VHP  T++++ G  IIFGE+C+VEE A I +  S+         + IG+ N+FEVGC V +A+IGD N F+ KC +G  V V  GC +GAG+ +         T++Y
Sbjct:    4 ENNIKIFPKSVVCEESTLRGDITFSAGCVVHPSATVIAEAG-PIIFGENCIVEEYATIAHRLSDGASWDANNILSIGSHNVFEVGCTVEAARIGDKNVFESKCFVGKGVTVSSGCVIGAGIRMHTAQVLPENTIVY 138          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: UPI0018CE2538 (dynactin subunit 6 isoform X1 n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE2538)

HSP 1 Score: 107 bits (267), Expect = 3.800e-23
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   98 MAEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNE------------SSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
            MA +++ +    +V E++ +QG++ I PGC++HP  TI+++ G  II GE+C+VEE A I               S+  ++IGA N+FEVGC V + +IG+ N F+ KC +GP V +  GC +GAG+ +         TV+Y
Sbjct:    1 MAGNDIKVMAKSIVCEDSILQGDITILPGCVIHPSVTIIAEAG-PIILGENCIVEEYASIVYRQQMKTSSTGNASSATPLVIGANNVFEVGCTVEAHRIGEKNVFECKCYVGPNVGISSGCIIGAGVQIESAQDLPENTVIY 141          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: UPI00096B5543 (dynactin subunit 6-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B5543)

HSP 1 Score: 106 bits (264), Expect = 4.410e-23
Identity = 58/145 (40.00%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  134 LVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED---------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGN-ITAQSGTVLYYDSNEVDAFRVNIPPHN 538
            LV EE+ ++G++ IG   ++HP  TI+++ G  II G+ C++EE+  I +    D         M+IG+ N FEV C + S+KIG+ N F+ KC +GP+V V DGCTVGAG +LTG  I  ++  +   D    D F    PP+N
Sbjct:   12 LVCEESKLRGDITIGAETVIHPHVTIIAEAG-PIIIGDHCLIEEKTQIIHRLPFDQPRRDTTPVMIIGSYNTFEVDCMIESSKIGNDNLFESKCYVGPKVTVTDGCTVGAGCMLTGEQILPENIVITGSDCIRRDGFEA--PPNN 153          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: A0A6P4JGM0_DROKI (Dynactin subunit 6 n=11 Tax=melanogaster group TaxID=32346 RepID=A0A6P4JGM0_DROKI)

HSP 1 Score: 105 bits (261), Expect = 2.260e-22
Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = 2
Query:  101 AEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN--------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
            +E+ + I    +V EE++++G++    GC+VHP  T+++  G  II GE+C++EE A I +        +++  + IG  N+FEVGC V +A+IGD N F+ KC +G  V V  GC VGAG+ +  +      T++Y
Sbjct:    3 SENRIKIFPKSVVCEESNLRGDITFSSGCVVHPSATVIADAG-PIIIGENCIIEEYATIAHRLEPGASWDANNILSIGTHNVFEVGCNVEAARIGDKNVFESKCFVGRGVTVTSGCVVGAGIKMLTSQRLSENTIVY 138          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: U5EX38_9DIPT (Dynactin subunit 6 (Fragment) n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5EX38_9DIPT)

HSP 1 Score: 104 bits (259), Expect = 4.540e-22
Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  104 EDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN-------------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
            ++++ I    +V E+++++G++ I  GC++HP  TI+++ G  II GE+C+VEE A I               +S   ++IGA NLFEVGC V + KIG+ N F+ K  +  +VVV +GC +GAG  L G  T    TV+Y
Sbjct:    2 KNDIKIFPRSIVCEDSNLRGSITISSGCVIHPSVTIIAESG-PIILGENCIVEEYAKIIYRIPKQHPLYSDDPDSIPPLIIGADNLFEVGCRVEALKIGERNIFEIKSYVSSDVVVTNGCVIGAGCHLIGEQTLPEKTVIY 141          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: A0A1L8EDD9_HAEIR (Dynactin subunit 6 n=2 Tax=Haematobia irritans TaxID=7368 RepID=A0A1L8EDD9_HAEIR)

HSP 1 Score: 103 bits (258), Expect = 7.230e-22
Identity = 56/151 (37.09%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  107 DEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED---------------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY-YDSNEVDA 511
            +++ I    +V EE+ ++G++ I  GC++HP  +I+++ G  II GE+C+VEE A I    +E+               ++IGA N+FEVGC V + KIGD N F+ K  +GP+V+V +GC VGA + L         TV+Y  DS++ +A
Sbjct:    7 NDIKIMNRSIVCEESILRGDITISQGCVIHPSASILAEAG-PIILGENCIVEEYATIAYRLTEEQKLLKETGKFETAPTLVIGASNVFEVGCLVEAHKIGDKNVFECKSYVGPDVIVTNGCIVGAAVSLKCKQQLPESTVIYGRDSSQREA 156          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: Q9VIZ1_DROME (Dynactin subunit 6 n=10 Tax=melanogaster group TaxID=32346 RepID=Q9VIZ1_DROME)

HSP 1 Score: 103 bits (257), Expect = 7.810e-22
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  101 AEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN--------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
            +E+ + I    +V EE+ ++G++    GC+VHP  T+++  G  II GE+C++EE A + +        + +  + IG  N+FEVGC V +AKIGD N F+ KC +GP V V  GC    G+ + G+      T++Y
Sbjct:    3 SENRIKILPKAVVCEESSLRGDITFSSGCVVHPSATVIADAG-PIIIGENCIIEEYATVAHRLEPGAVWDVNNILSIGTHNVFEVGCQVEAAKIGDKNVFESKCYVGPGVTVSSGCVXXXGIKIHGSQRLPENTIVY 138          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: W7XBT6_TETTS (Dynactin subunit 6 n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=W7XBT6_TETTS)

HSP 1 Score: 102 bits (255), Expect = 1.060e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 2
Query:  134 LVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLYYD 493
            ++S++++I GNV+ G GCI+HP CTI+++GG  IIFG+  ++EER  I N+ S+D      M IG+ NLFEVG  + ++ IG+ N F+P+ S+  +  + D CT+GA + L      +   + Y D
Sbjct:   12 ILSQKSEILGNVKFGKGCIIHPNCTILAEGGD-IIFGDYNIIEERVSIVNKKSKDPAKNKNMFIGSYNLFEVGSKIDTSDIGNMNHFEPRSSVEQDCQIKDKCTIGACVKLPQGTIIEDKKIYYPD 136          
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: B3MNN7_DROAN (Dynactin subunit 6 n=2 Tax=ananassae subgroup TaxID=32347 RepID=B3MNN7_DROAN)

HSP 1 Score: 103 bits (256), Expect = 1.090e-21
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 2
Query:  134 LVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN-----ESSED---MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
            +V EE+ ++G++    GC+VHP  T++++ G  II GE+C+VEE A I +     E  +D   + IG  N+FEVGC V +A+IGD N F+ KC +G  V V +GC VGAG+ +         TV+Y
Sbjct:   15 VVCEESKLRGDITFSSGCVVHPSATVIAEAG-PIIIGENCIVEEYATIAHRLAPGEEYDDNNILSIGTQNVFEVGCNVEAARIGDKNVFESKCFVGKGVSVSNGCVVGAGIKMIARQHLPENTVVY 139          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J2TQ95_DROLE3.880e-2440.15Dynactin subunit 6 n=1 Tax=Drosophila lebanonensis... [more]
B4M940_DROVI3.510e-2338.24Dynactin subunit 6 n=8 Tax=Drosophila TaxID=32281 ... [more]
UPI0018CE25383.800e-2337.32dynactin subunit 6 isoform X1 n=2 Tax=Teleopsis da... [more]
UPI00096B55434.410e-2340.00dynactin subunit 6-like n=1 Tax=Aethina tumida Tax... [more]
A0A6P4JGM0_DROKI2.260e-2236.50Dynactin subunit 6 n=11 Tax=melanogaster group Tax... [more]
U5EX38_9DIPT4.540e-2238.30Dynactin subunit 6 (Fragment) n=1 Tax=Corethrella ... [more]
A0A1L8EDD9_HAEIR7.230e-2237.09Dynactin subunit 6 n=2 Tax=Haematobia irritans Tax... [more]
Q9VIZ1_DROME7.810e-2235.77Dynactin subunit 6 n=10 Tax=melanogaster group Tax... [more]
W7XBT6_TETTS1.060e-2139.68Dynactin subunit 6 n=1 Tax=Tetrahymena thermophila... [more]
B3MNN7_DROAN1.090e-2141.27Dynactin subunit 6 n=2 Tax=ananassae subgroup TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_982contigC-australica_Contig_982:2468..5649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog203908.EGG10834
PFAMsHexapep,Hexapep_2
Model size1902
Max annot lvl4751|Fungi
KEGG koko:K10428
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons13
Evalue1.35e-26
EggNOG OGsKOG4042@1|root,KOG4042@2759|Eukaryota,38NSB@33154|Opisthokonta,3P4E3@4751|Fungi,3V13A@5204|Basidiomycota,2YEGV@29000|Pucciniomycotina
Ec32 ortholog descriptionDynactin subunit 6
Ec32 orthologEc-21_004040.1
Descriptiontrimeric LpxA-like protein
Cds size540
COG categoryUZ
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588849.0434463-UTR-C-australica_Contig_982:2467..26081682588849.0434463-UTR-C-australica_Contig_982:2467..2608Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 2468..2608 -
1682588849.0556004-UTR-C-australica_Contig_982:2672..27701682588849.0556004-UTR-C-australica_Contig_982:2672..2770Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 2673..2770 -
1682588849.0671258-UTR-C-australica_Contig_982:2892..30141682588849.0671258-UTR-C-australica_Contig_982:2892..3014Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 2893..3014 -
1682588849.0775816-UTR-C-australica_Contig_982:3117..34161682588849.0775816-UTR-C-australica_Contig_982:3117..3416Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 3118..3416 -
1682588849.0883346-UTR-C-australica_Contig_982:3546..36171682588849.0883346-UTR-C-australica_Contig_982:3546..3617Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 3547..3617 -
1682588849.099705-UTR-C-australica_Contig_982:3723..42571682588849.099705-UTR-C-australica_Contig_982:3723..4257Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 3724..4257 -
1682588849.2001383-UTR-C-australica_Contig_982:5552..56491682588849.2001383-UTR-C-australica_Contig_982:5552..5649Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 5553..5649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588849.1119087-CDS-C-australica_Contig_982:4257..42781682588849.1119087-CDS-C-australica_Contig_982:4257..4278Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 4258..4278 -
1682588849.124026-CDS-C-australica_Contig_982:4437..45581682588849.124026-CDS-C-australica_Contig_982:4437..4558Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 4438..4558 -
1682588849.136097-CDS-C-australica_Contig_982:4746..48101682588849.136097-CDS-C-australica_Contig_982:4746..4810Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 4747..4810 -
1682588849.1468184-CDS-C-australica_Contig_982:4890..49931682588849.1468184-CDS-C-australica_Contig_982:4890..4993Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 4891..4993 -
1682588849.1568632-CDS-C-australica_Contig_982:5080..51541682588849.1568632-CDS-C-australica_Contig_982:5080..5154Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 5081..5154 -
1682588849.168262-CDS-C-australica_Contig_982:5258..52911682588849.168262-CDS-C-australica_Contig_982:5258..5291Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 5259..5291 -
1682588849.182504-CDS-C-australica_Contig_982:5365..54251682588849.182504-CDS-C-australica_Contig_982:5365..5425Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 5366..5425 -
1682588849.191857-CDS-C-australica_Contig_982:5488..55521682588849.191857-CDS-C-australica_Contig_982:5488..5552Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 5489..5552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_982.1.1prot_C-australica_Contig_982.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_982 4258..5552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_982.1.1

>prot_C-australica_Contig_982.1.1 ID=prot_C-australica_Contig_982.1.1|Name=mRNA_C-australica_Contig_982.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=180bp
MAEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGE
DCVVEERAVITNESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIG
PEVVVCDGCTVGAGLVLTGNITAQSGTVLYYDSNEVDAFRVNIPPHNRNW
NEANLEAYRQAIANPKKKTYLGKHHRLKI*
back to top

mRNA from alignment at C-australica_Contig_982:2468..5649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_982.1.1 ID=mRNA_C-australica_Contig_982.1.1|Name=mRNA_C-australica_Contig_982.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3182bp|location=Sequence derived from alignment at C-australica_Contig_982:2468..5649- (Chrysoparadoxa australica CS_1217)
CCGCGATCTTTTGAGCTTTGCACTTTGCGCTTGCATTATCCTTGCGCGCG TTTGCTGCTTGGGGTCGTGGAGCTTTTGACCTTCTCCTTGAGTGAAGATG GCTGAGGATGAGGTCGTCATAGGAGAAGGCTGCCTTGTGAGCGAGGAAGC TGATATCCAAGGTTCTGCTCTCCCTTGCACACCTCTACTTCACCCTCCTC ACTCTCCTCCACCCTTTCCCCAAGGCAATGTTAGGATTGGGCCTGGCTGT ATAGTACATCCCTGCTGCACCATCGTCAGCCAAGGTAGGAAGTAGCTAGA GCTGTCTTCATCTCCTCCACTGCCTACTAAGAAACAAGCTCCTACACACT CTCACCAGGAGGAGGTGCAATCATCTTTGGAGAGGATTGCGGTGAGTGAT GCTTTGCCATGAGAGGACTGTCCTCCCACTTCTCCCTCAGCTCTCCTCAC CTCGCCCTTGTCTCAACCTTATCATCCTGACTCACGAATGGCCAGTGGTG GAAGAGCGAGCAGTCATCACAAATGAGTCAAGCGAAGACATGCTTATCGG AGCAGGGAATTTGTTTGAGGTGGGATGAGTGGATCACCAACGTTCCATGA GATTGACTCACCGCCATGCACCTTGCAGTATGGTATACCTAATCCTGGCT TTGCAGGTTGGTTGCTGCGTGAGGAGCGCCAAGATTGGGGACTTCAACAG GTTTCAACCCAAGTGCAGCATAGGGCCTGAGGTGGTGGTGTGTGATGGGT GTACAGTAGGTGAGGGTTTCACTGCAGAAGCTAACGCGGCAGGTTCTTTC GCTGTGGCTTTTCTGACAGATGTCTGTGCCATCATGCAGGTGCCGGCCTG GTGCTGACGGGGAATATCACTGCACAAAGTGGCACGGTGCTGTATTATGA CAGGTATGCCAAAGGGGTTATATCAATGTGGTGTGCTGAATGGTGCAAGG CAGCAGCTTAGCTATGAAATAAATGACTCAGATTAGCCTTGAACCGTTCT CCTCATTGGAATGCCTGAGGCCAGGCAGATCATTTGGCCTTGCTTTGCTT CCCAATGCTTATCTTTTCTTTGCCCCCACCTTAACTTCCAGCAATGAAGT TGATGCCTTCCGTGTCAACATCCCCCCCCATAATCGGAACTGGAATGAGG CAAATCTTGAGGCATACAGGCAAGCCATAGCCAATCCCAAGAAGAAGACA TACTTGGGCAAGGTTGGTTTTGAGCATACATATGCTTTAGGACCTACACC ACACCGTTCATATTAAACAATACCATACCTTTTGACTTATTTGCCAAGTG AATCCCTAGCTTGCCCACTTTTGTCAGCCTGATAGTGACTTACGGACGAG CATTGTGCCTGGATCCCCCAGCACCACCGACTCAAGATATGAAGAACAAA GACGTGAAGATATGAGTGCATTCCTGTGGCAAAGACTATTGCTTTGACAC GTGTGGGCACTAAGTGCACGGGCTATTCTGGCATGATCAGAGTGTGCAGA ACCAGGTTACGAGGTTTACCAGCCCAGCTCTCAACTGTTCAGTTAGCGCA GAGAAAGGTGAAAGGACGGAGGTCGCTGGCCTCAAGAGCAGCTACCTTTG GAGGGTCCAGGTAGCTCGTGCAGGCAAGATATGAGGTGAAATCTCCCTCA GCTTTCAGTGAGCAAGGGGGGAGGTGTCTAGATGTACATGTCTAGATCCT TCTTTCCGTTAGTTCTTTTAAGCTCTTGCCAGCTTGGCAGGCTGCCCCAG CACTCATTATTTTGTATCAGGTGCAAAACAAGCTCTGCCAGTGCCGGTGA CATAGTGGCATAGATCTTGGTTTACCATGTTGATAATTATTGTTTCACTC CCCCAGCGGATGTGCTTAAGCACTTCTTTCTCTCCCTCTCTGGTTGGTTG CATTTTACTTACACATCAAGCTCTCTGCGAAAGGGATGTAGCTAGTTAGC GAGCAGCTGTCAGAGATCAGAAGGATCAAGGGCCAAGCCTCATTCATCCC AATAATAAATGTCAAGTAAGTTGAACTTACCTCGTGTGTCAACTCCAGTA GCAGGGTTAGTTCCCTTGGCATCAGGCCTCTGGCACAAGGCCCTCTGTGT CCTATGTGATGAGTGAAGCAAGATGAGTGAGTGCAAGGTCAGCAGTTTGC AGTTTGGACATCTAAAGGTCACTGTCATCACCGACAGAACCCATCTGAGC GCAGCGGCTTGCAAGGTGGGGATAAAGCTACCTGGGCTGCATCAAAGCAG TAGTGAAGTCCACCCCAGAAATATCCCTGTCAAGGTGCATCAGAACCAAG GTCTATTGTTTAGTATATCCCGCTTCGCTGGCATTACTTATCATCAAGTC CCACTCTCTCATCAACATCATAGCCCAGCACTTACCCTACACCTTCAAAC GAATCCGAGAGGTAAGCATCCTCCAATATGGCATCAGTCAATACAGTGCC CTCCAAGTTTGCCTGCTCCAATGATGCCGTGCTCAAGTTGGCCCCAGTGA AGTCAGCCTTCTCCAGGTCAGCCTGCAAACAAGTTGAGTGCGGTAGGGTT GGTATCCAAGATATCCAGGATATCCTGGTTATAGGGGGGCTGGTTCAGCT GGGTGGCTGTGATGGGATGGCCCACCTTGAAGAAGCGGGACCCTCGCAAG TCACTGCCGTTGAAGTGCACTGCCTTTGCAATCACTCCGCTGAAATCCTT GCCCTTGTAGCTGCCTTTGCTGAAATCCTTTTCTTTCAGGTTCAGTCCGG CATAATCTGGGAAGAAGGAGAAGGGGGAACAGGAAGGGTGAGCAAGGCAG GGAGGGGGGCAATTTCAAGAGGCCTTCAAGAGGCCTTGAGAGGCGGGAGA GGTTGAGAGCAGAGTAGAAAGTACTTACCCAAGCCTCCCCCGCTGATAGC CAAAGCCGTCGGAGGTGGCGTGCATAGGGGGGCGAAACTGAGTAAGACAC CTGCCAAGGTGGCCGCGGCAGCCCTTTGCGCTGGAAGAGGAGAAAAGAGT TAGCCCAGAAATGCAAGCCTGGTAATAGCAGCGGAAAGGAGGTACCTGCA CTTCCTCCCGCCATACTTAGGTTTGTTGCTACACCCGGGCCCGCATGAAG ATGCGAAGGCCCTGTAAAGAAGCTCTCAACCCCCCACGCCAACAAAAGTG AAAATGCGAATGCGCCCTTCATCTTCCCCTCT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_982:2468..5649-

>mRNA_C-australica_Contig_982.1.1 ID=mRNA_C-australica_Contig_982.1.1|Name=mRNA_C-australica_Contig_982.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=540bp|location=Sequence derived from alignment at C-australica_Contig_982:2468..5649- (Chrysoparadoxa australica CS_1217)
ATGGCTGAGGATGAGGTCGTCATAGGAGAAGGCTGCCTTGTGAGCGAGGA
AGCTGATATCCAAGGCAATGTTAGGATTGGGCCTGGCTGTATAGTACATC
CCTGCTGCACCATCGTCAGCCAAGGAGGAGGTGCAATCATCTTTGGAGAG
GATTGCGTGGTGGAAGAGCGAGCAGTCATCACAAATGAGTCAAGCGAAGA
CATGCTTATCGGAGCAGGGAATTTGTTTGAGGTTGGTTGCTGCGTGAGGA
GCGCCAAGATTGGGGACTTCAACAGGTTTCAACCCAAGTGCAGCATAGGG
CCTGAGGTGGTGGTGTGTGATGGGTGTACAGTAGGTGCCGGCCTGGTGCT
GACGGGGAATATCACTGCACAAAGTGGCACGGTGCTGTATTATGACAGCA
ATGAAGTTGATGCCTTCCGTGTCAACATCCCCCCCCATAATCGGAACTGG
AATGAGGCAAATCTTGAGGCATACAGGCAAGCCATAGCCAATCCCAAGAA
GAAGACATACTTGGGCAAGCACCACCGACTCAAGATATGA
back to top