mRNA_C-australica_Contig_98.5.4 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.5.4
Unique NamemRNA_C-australica_Contig_98.5.4
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A6H5JKX8_9PHAE (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX8_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.320e-93
Identity = 142/254 (55.91%), Postives = 179/254 (70.47%), Query Frame = 1
Query:  145 NIPYVILPGFGNCAQDYVDPFNKGEE-GLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWSEGKATSDVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWRFAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPEMWYGSEKVVDRWL 903
              P VILPGFGN A+DY +P + GE+     +LE+RG+ +FV+ ++RSDW KV   + + DFW+G   P GPAY WYL  VK+TV  + E  G+D+V+L GHSAGGWL RA +  G W EG A+ DVVAGLVTLG+PHF  P+    DMTRGALTFTS  YP  +L +KGIFYVTV G A+ G ++APR  R RFA+ SY+TV G+G  +GD  VP    HL+GA Q++L  V+HSVD P+ WYGSE VVDRWL
Sbjct:   40 KFPVVILPGFGNDARDYTNPLDGGEDKAFASALERRGLKTFVVAVERSDWLKVASAVLTLDFWKGTCRPNGPAYSWYLQKVKETVRTSLEETGADKVLLVGHSAGGWLARAALAKGMWEEGVASEDVVAGLVTLGSPHFAGPM----DMTRGALTFTSDEYPGAFLKDKGIFYVTVGGAALLGEKDAPRRSRARFAYGSYQTVCGEGATMGDACVPLVYTHLEGAEQVTLDGVFHSVDKPDEWYGSEGVVDRWL 289          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A0G4FYU4_VITBC (GPI inositol-deacylase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FYU4_VITBC)

HSP 1 Score: 260 bits (664), Expect = 3.860e-79
Identity = 131/272 (48.16%), Postives = 173/272 (63.60%), Query Frame = 1
Query:  151 PYVILPGFGNCAQDYVDPFNKGEE-GLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARET-----CGSDRVVLCGHSAGGWLGRAVMGDGTW----------SEGKATSDVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWRFAFESYKTVAGDGNQI-GDGYVPEGSAHLDGAVQISLKDVYHSVDTPEMWYGSEKVVDRWLEVSR 915
            P VILPGFGN A DY +P   GE+  L  +LE+RG   +V+P+ R +W  V R   ++ FW G+  P GP ++WYLD V+ TVD+ R           +VVL GHSAGGWL RAVMGDGTW          S  + T D+V G+++LG+PH+PPP     DMTRG LT+  + YP  +  EKGIFYV+V G AV G  +A RG   RFAF+SY+ V G G+ + GDG VP  SA+LDG+  +++  VYHS++ P+ WYGSE VVD WL  ++
Sbjct:   91 PIVILPGFGNDALDYTNPMKMGEDTSLKAALERRGYNVYVVPIARREWLSVARDFLTRRFWTGECRPDGPGFRWYLDRVRTTVDRVRRRDWPGGALPPKVVLVGHSAGGWLARAVMGDGTWRNETDEETGESTVEYTQDIVQGVISLGSPHYPPPPPAL-DMTRGVLTYVCREYPGTFHKEKGIFYVSVVGDAVTGDVQADRGTLERFAFQSYEVVCGSGDGVRGDGVVPLRSAYLDGSRCVTMSGVYHSINVPDSWYGSENVVDTWLAAAQ 361          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A835Z797_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z797_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.870e-76
Identity = 129/260 (49.62%), Postives = 164/260 (63.08%), Query Frame = 1
Query:  151 PYVILPGFGNCAQDYVDPFNKG-EEGLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWS-----EGKATS-----DVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWRFAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPEMWYGSEKVVDR 897
            P+VILPGF N   DY +PFN+G E  LV  L +RGV S+VLPL+R +WF V+RG     FW G APP   AY WYL+ V+ TV  ARE  G+ +V LCGHSAGGWL RA +GDGTWS      G+A +     DVV G+VTLGAPHF                      P  +L ++G+ YVTVAG A+ G+++APR D  R A+ SY+ V G+G   GDG VP  SAHL+GA+QI+L  V H+VDTP  WYG+++ + R
Sbjct:   67 PFVILPGFSNADMDYFNPFNQGYETSLVAGLARRGVTSYVLPLERKEWFNVVRGFREAAFWRGAAPPEC-AYGWYLEKVRATVALAREETGAPKVALCGHSAGGWLARAALGDGTWSTERDASGQAAAIVRSEDVVCGVVTLGAPHF----------------------PGAFLKDRGVQYVTVAGAAIRGAKDAPRADPARRAYNSYQLVCGEGETDGDGCVPVVSAHLEGALQITLDGVKHTVDTPNTWYGTDENIGR 303          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: W7T4S9_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4S9_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.100e-71
Identity = 122/263 (46.39%), Postives = 164/263 (62.36%), Query Frame = 1
Query:  151 PYVILPGFGNCAQDYVDPFNKGEE-GLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWS--EGKATSDVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWR---------FAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPEMWYGSEKVVDRWL 903
            P VI PGFGN   DY++P N GEE G+V +L +RG P +V+P+KR+DW K   GL +  FW     P   ++ WYL+ V +TV++A       + ++ GHSAGGWL RA +GDG W+    K   D+V G VTLG PH PP       +TRGAL      YP  +L  +G+FY+TVAG AVEG  E P+G   R         FAF SY  V G G+ +GDG VP  +AHL+GA Q++L++V+HS++ P+ WYGSE+V+D WL
Sbjct:   45 PVVICPGFGNDQIDYLNPMNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGLFTPSFWSQTMTPRDLSFGWYLNKVVQTVERAASEHPGRKALVVGHSAGGWLARAALGDGAWTGKAAKEVRDLVQGCVTLGTPHLPPAPPGVC-VTRGALGHVHLNYPGAFLKPQGLFYMTVAGVAVEGRRE-PQGAGRRERRGGSIEDFAFRSYVQVCGRGDVVGDGVVPLEAAHLEGAKQVNLQNVFHSINAPKAWYGSEEVIDSWL 305          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: L1JBA7_GUITC (GPI inositol-deacylase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBA7_GUITC)

HSP 1 Score: 236 bits (601), Expect = 2.030e-70
Identity = 118/265 (44.53%), Postives = 167/265 (63.02%), Query Frame = 1
Query:  157 VILPGFGNCAQDYVDPFNKG-EEGLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWSEGKATS---DVVAGLVTLGAPHFPPPVETTN--DMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWRFAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPEM--------WYGSEKVVDRWLEV 909
            VILPGFGN  +DY+DPF  G E+ +  +LE+RG    V+PLKR+ W  VL G+ +  FW GK+ P  P Y WY+++ ++ + +A E      VV+ GHSAGGWLGRAV+GDGTW +    +   D+++  V+LG PH PP     +  DMTRGALT+T +  P  +L+ + + YVTV    + G +E  RG   R A+ESY+ V G+G+ +GDG VP  S+HL+G+ Q+ LK  YHS+ +P M        WYGS+ ++D WL V
Sbjct:   73 VILPGFGNAQEDYIDPFGCGFEQSITCALEKRGHQVQVMPLKRAQWLNVLWGIFTLSFWLGKSSPYEPGYGWYVNMARREISRAYEASNKTPVVVIGHSAGGWLGRAVLGDGTWRDEDTKTRIVDMISCFVSLGTPHSPPSSNAKDIMDMTRGALTWTHENLPGAFLAPR-VPYVTVGSDLIPGDKEGARGSLGRSAYESYRLVCGEGSVLGDGVVPLQSSHLEGSTQVDLK-CYHSISSPRMPEYEIRSTWYGSDSLIDSWLNV 335          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A4D9CVP3_9STRA (GPI inositol-deacylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVP3_9STRA)

HSP 1 Score: 231 bits (588), Expect = 3.820e-69
Identity = 119/257 (46.30%), Postives = 160/257 (62.26%), Query Frame = 1
Query:  169 GFGNCAQDYVDPFNKGEE-GLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWS--EGKATSDVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWR---------FAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPEMWYGSEKVVDRWL 903
            GFGN   DY++P N GEE G+V +L +RG P +V+P+KR+DW K   GL +  FW     P   ++ WYL+ V +TV++A       + ++ GHSAGGWL RA +GDG W+    K   D+V G VTLG PH PP       +TRGAL      YP  +L  +G+FY+TVAG AVEG  E PRG   R         FAF SY  V G G+ +GDG VP  +AHL+GA Q++L++V+HS++ P+ WYGSE+V+D WL
Sbjct:   40 GFGNDQIDYLNPRNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGLFTPSFWSQTMTPRDLSFGWYLNKVVQTVERAASEHPGRKALVVGHSAGGWLARAALGDGAWTGKAAKEVRDLVQGCVTLGTPHLPPAPPGVC-VTRGALGHVHLNYPGAFLKPQGLFYMTVAGVAVEGRRE-PRGAGGRERGGGSIEDFAFRSYVQVCGRGDVVGDGVVPLEAAHLEGAKQVNLQNVFHSINAPKAWYGSEEVIDSWL 294          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A7S0SUC9_9STRA (GPI inositol-deacylase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUC9_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.030e-66
Identity = 115/263 (43.73%), Postives = 163/263 (61.98%), Query Frame = 1
Query:  145 NIPYVILPGFGNCAQDYVDPFNKGEE--GLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETC-GSDRVVLCGHSAGGWLGRAVMGDGTW-SEGKATSDVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWRFAFESYKTVAGD----GNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPE-MWYGSEKVVDRWLE 906
            ++ ++ILPGFGN A DY D F    E  GL+ +L +RG+ + + PLKR  WF + +GL S D +     P    +K+Y D++   V +  E   G+D++VL  HSAGGWL R +M DG W        D++AG++TLGAPH PPP +   DMTRGA T+ ++ YP CYL+ + I YVTV GTAV G + AP+     FA+++YK + G+     + IGDG VP  S HL+G++QI++  VYH V  P   WYG + ++D WLE
Sbjct:   28 SLKFLILPGFGNDALDYTDEFRPEIEYSGLLTNLVKRGIDTQIAPLKRLSWFNIAKGLFSVDIYRNTCKPD-KLFKFYYDIIDSKVREMHEQSNGNDKIVLVCHSAGGWLARGMMSDGNWIGSNTPVEDMIAGIITLGAPHIPPP-DKNEDMTRGAWTYVNENYPGCYLNNR-ISYVTVMGTAVRGDQNAPKQSFEGFAYDAYKKLRGEILTENDIIGDGLVPVSSGHLEGSLQINIPGVYHGVIAPNNCWYGGDHIIDLWLE 287          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A7S2LG03_9STRA (GPI inositol-deacylase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG03_9STRA)

HSP 1 Score: 225 bits (574), Expect = 3.050e-66
Identity = 128/298 (42.95%), Postives = 174/298 (58.39%), Query Frame = 1
Query:   76 GVLKIVMGCLALLRAVEGLVIGHNIPYVILPGFGNCAQDYVDPFNKGEEGLVGSLEQRGVPS---FVLPLKRSDWFKV-LRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQ-ARETCGSDRVVLCGHSAGGWLGRAVMGDGTW----------SEGKATSDVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWR-----FAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPEMWYGSEKVVDRWLEV 909
            G  K ++    L++  E ++    + ++ILPGFGN  +DY  P       LV +L  RG       VLP+KRSDW KV L G     FW+  A PT PA++WYL+LV   V +   E     +VVL GHSAGGWL RA +G GT           S  +   D + G+V+LGAPH PPP E   DMTRGAL  T++++P  +    G FYVTVAGTA+ G E+             FA+ SYK V GDGN IGDG VP  ++HLDGA Q++L++ +HS++ PE WYG+++ +D+W +V
Sbjct:   65 GANKNILNGAELVKPTEAML--EKVHFLILPGFGNAPEDYTMP-----RSLVPTLLSRGWSENNISVLPMKRSDWLKVFLCGALDLKFWQADAAPTRPAFRWYLELVASEVKRIVEEEKPETKVVLVGHSAGGWLARASVGFGTTEVYPEREVMDSNVQVALDNILGIVSLGAPHLPPP-EGEMDMTRGALRITNELFPASFHLPSGTFYVTVAGTAITGEEQMRESMMEPTTVNGFAYNSYKAVCGDGNAIGDGVVPLEASHLDGAEQLTLENCFHSINAPEEWYGADRFIDQWHKV 354          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A7S4K5P4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K5P4_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.890e-65
Identity = 135/307 (43.97%), Postives = 172/307 (56.03%), Query Frame = 1
Query:   76 GVLKIVMGCLALLRAVEGLVIGHNI---PYVILPGFGNCAQDYVDPFNKGEE-GLVGSLEQRGV-PSFV--LPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWSE--GKATSDVVAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEE--------------APRGD--RWRFAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQISLKDVYHSVDTP------EMWYGSEKVVDRWL 903
            G+L I     A   A  G   G  +   P VI PGFGN   DYV+P  +  + GLV +LE+RG  P  +  +P+KR+DW +V  GL   DF+ G A PTG  Y WY+D +KKTVD A E  G +RV+L GHSAGGWL RA MGDGTW    G  T+D V  L T+GA H  P  + +  +TRGAL +T   YP  YLS +GI YV+V G A+ G                 A RG+    R AF SY++V G G   GDG VP     L+GA QI L+ V HS++        + WYGSE ++D+WL
Sbjct:   20 GILLIGTSAAAAFSATSGA--GSTLSSTPVVICPGFGNDEIDYVEPLKQPRDVGLVSALERRGFDPDLISIIPVKRTDWLRVAGGLLDLDFYTGNAKPTGGGYGWYVDRLKKTVDMAHEESGGERVLLLGHSAGGWLARAAMGDGTWCPEGGIRTADRVRCLATVGAIHRTPE-DASTCVTRGALGYTDSSYPGAYLSGEGIGYVSVGGDAIVGDNAKIAAVETTDADELYAARGEGSASRVAFTSYESVCGQGGVTGDGVVPLDWTRLEGARQIRLEGVVHSINEAGTTIPTDRWYGSEGIIDQWL 323          
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Match: A0A8J9RBN4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RBN4_9CHLO)

HSP 1 Score: 219 bits (558), Expect = 3.070e-64
Identity = 113/262 (43.13%), Postives = 156/262 (59.54%), Query Frame = 1
Query:  151 PYVILPGFGNCAQDYVDPFNKGEEGLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWYLDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWSEGKATSDVV-----AGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVAGTAVEGSEEAPRGDRWRFAFESYKTVAGDGN-QIGDGYVPEGSAHLDGAVQISLKDVYHSVDTPEMW------YGSEKVVDRW 900
            P V+LPGFGNC+ DY +P+    + +   L +RG   +V+ L+R DW KV R + S+++W G      P Y+WYL+ +++ VD+AR  C SD+V L GHSAGGWLGRA + D  + +     + V       LVTLG PH P P  T  D T GALT+ +  +P  + +++G+ YV VAG AV+  + APR    R+A  SY  V GDG+   GD  VP  +AHL+GA  I L+ V+HS+ T + W      YGSE VVD W
Sbjct:   69 PVVLLPGFGNCSADYENPYGDPSDSMAAILRRRGFKVYVVQLERKDWLKVGRAMISRNYWAGLCT-VDPGYRWYLERIQQAVDKARLECRSDQVHLVGHSAGGWLGRAFVADPLYFDSPVQDEGVPHQGICSLVTLGTPHRPRPAGTGLDTTGGALTWVNLQWPGAHFADRGVEYVCVAGCAVQADKSAPRSSIERYAHSSYSQVCGDGHGHWGDCVVPLANAHLEGADNIVLEGVFHSMGTNKSWQIEHRWYGSEDVVDHW 329          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKX8_9PHAE1.320e-9355.91AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A0G4FYU4_VITBC3.860e-7948.16GPI inositol-deacylase n=2 Tax=Vitrella brassicafo... [more]
A0A835Z797_9STRA1.870e-7649.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7T4S9_9STRA1.100e-7146.39AB hydrolase-1 domain-containing protein n=1 Tax=N... [more]
L1JBA7_GUITC2.030e-7044.53GPI inositol-deacylase n=1 Tax=Guillardia theta (s... [more]
A0A4D9CVP3_9STRA3.820e-6946.30GPI inositol-deacylase n=1 Tax=Nannochloropsis sal... [more]
A0A7S0SUC9_9STRA1.030e-6643.73GPI inositol-deacylase n=1 Tax=Chromulina nebulosa... [more]
A0A7S2LG03_9STRA3.050e-6642.95GPI inositol-deacylase n=1 Tax=Leptocylindrus dani... [more]
A0A7S4K5P4_9STRA1.890e-6543.97Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8J9RBN4_9CHLO3.070e-6443.13Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:24372..26906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTL3
PFAMsAbhydrolase_6,PGAP1
Model size1340
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons9
Evalue2.22e-99
EggNOG OGsCOG1075@1|root,2QS8K@2759|Eukaryota
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-06_008670.1
DescriptionAlpha beta-Hydrolases superfamily protein
Cds size852
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.5.4prot_C-australica_Contig_98.5.4Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 24444..26490 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588846.1135142-UTR-C-australica_Contig_98:24371..244431682588846.1135142-UTR-C-australica_Contig_98:24371..24443Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 24372..24443 +
1682588846.2515361-UTR-C-australica_Contig_98:26490..269061682588846.2515361-UTR-C-australica_Contig_98:26490..26906Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 26491..26906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588846.1300867-CDS-C-australica_Contig_98:24443..245631682588846.1300867-CDS-C-australica_Contig_98:24443..24563Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 24444..24563 +
1682588846.1441255-CDS-C-australica_Contig_98:24725..248301682588846.1441255-CDS-C-australica_Contig_98:24725..24830Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 24726..24830 +
1682588846.156961-CDS-C-australica_Contig_98:24908..249791682588846.156961-CDS-C-australica_Contig_98:24908..24979Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 24909..24979 +
1682588846.1739352-CDS-C-australica_Contig_98:25065..251811682588846.1739352-CDS-C-australica_Contig_98:25065..25181Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 25066..25181 +
1682588846.1882365-CDS-C-australica_Contig_98:25342..254371682588846.1882365-CDS-C-australica_Contig_98:25342..25437Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 25343..25437 +
1682588846.198813-CDS-C-australica_Contig_98:25652..257461682588846.198813-CDS-C-australica_Contig_98:25652..25746Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 25653..25746 +
1682588846.216935-CDS-C-australica_Contig_98:25830..258771682588846.216935-CDS-C-australica_Contig_98:25830..25877Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 25831..25877 +
1682588846.2294638-CDS-C-australica_Contig_98:26103..261941682588846.2294638-CDS-C-australica_Contig_98:26103..26194Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 26104..26194 +
1682588846.2413433-CDS-C-australica_Contig_98:26377..264901682588846.2413433-CDS-C-australica_Contig_98:26377..26490Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 26378..26490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.5.4

>prot_C-australica_Contig_98.5.4 ID=prot_C-australica_Contig_98.5.4|Name=mRNA_C-australica_Contig_98.5.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=284bp
MGVLKIVMGCLALLRAVEGLVIGHNIPYVILPGFGNCAQDYVDPFNKGEE
GLVGSLEQRGVPSFVLPLKRSDWFKVLRGLGSKDFWEGKAPPTGPAYKWY
LDLVKKTVDQARETCGSDRVVLCGHSAGGWLGRAVMGDGTWSEGKATSDV
VAGLVTLGAPHFPPPVETTNDMTRGALTFTSKMYPNCYLSEKGIFYVTVA
GTAVEGSEEAPRGDRWRFAFESYKTVAGDGNQIGDGYVPEGSAHLDGAVQ
ISLKDVYHSVDTPEMWYGSEKVVDRWLEVSRSG*
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mRNA from alignment at C-australica_Contig_98:24372..26906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.5.4 ID=mRNA_C-australica_Contig_98.5.4|Name=mRNA_C-australica_Contig_98.5.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2535bp|location=Sequence derived from alignment at C-australica_Contig_98:24372..26906+ (Chrysoparadoxa australica CS_1217)
GGATCGGAGGCCCTCTTGGGCCCTTAAGACGAGTGTAGGCCGTGCGCTGA AGTACTGTAAACCTATCGCAAAATGGGAGTCTTGAAGATCGTGATGGGCT GCCTCGCGCTTTTGCGTGCTGTAGAGGGACTGGTGATAGGGCATAACATC CCCTATGTAATCCTTCCCGGCTTTGGGAACTGCGCTCAAGACGTGAGTTC GCCTCACCTGGCTTCACCTCCTTTTGGCAGGCCCTTACGCCCTGCGGCTG CCCTTATGAGCGTAGAATGTGTACGCAGCCCTCCTTGTAGCCCTGCAGTG CCATAGCCTCTGTTGCTGTCAATATCCCCCTGAACTTCCAGGTCCCTTCC ACAGTACGTTGACCCCTTCAACAAGGGGGAGGAAGGCCTGGTGGGGTCCC TGGAGCAGCGAGGGGTGCCAAGCTTCGTCTTGCCGCTTAAAAGGTCAGAC TGGTTCAAGGTATGCAAGTAGGAAAAGCAAAGAGGGAGAGGACTAAGCCA AGACAGACCTAGCAACTCACTCACTCGCTCGCTAAAGGTGTTAAGAGGCC TGGGCTCCAAGGATTTCTGGGAAGGGAAGGCTCCACCAACAGGACCAGCA TACAAATGGTTGCCCTTCTCTCCCTTCCCTCTCCTCCAACCCTACCACAC GCAACTGCAGCGTTCTGACTCCCAAACTCCTGATCGTCATGCAGGTACCT GGACTTGGTCAAGAAGACGGTGGATCAAGCTAGAGAGACCTGTGGCTCTG ATCGTGTGGTGTTGTGCGGCCACAGTGCAGGCGGATGGTTGGGAAGGGCT GTCATGGGGGGTGAGGAGGCATAGCATCCTAATGATTAGCCCCTGATGAA GTGATTAATTACTACTAAGCCTTCCCCTCTTCCTCCCCCTTCCTCACTTA CTTTTATGCTTTAAAAAGCCTTGAATCACACCCCGTGCCCATGCTCCCTC TCATCCCACAACTACTCTCAGATGGCACCTGGTCTGAAGGGAAGGCCACA AGTGATGTGGTGGCTGGATTGGTGACTCTTGGTGCTCCCCACTTCCCGCC ACCGGTAGAGACAACAGTAAGACCTTCTAACACTACTGGCCACTAGCCCT AACATTGAGCTCTAATATTAGACCTAGCATTAGCAGCCCTAGTTATGCTT GGGCCAGCCACTTGGGTAGTCTTTCCCATCACTAGTATATGTACTTAGAT AGTTTTTTTTTCTTTCCTTTTCTGTCCTCTTTTTCTTCTGTCTTCTTTTT CTCAACCCGCCTCCCCACTTCCCTACCCCAGAATGACATGACAAGAGGGG CCCTGACATTCACATCTAAGATGTACCCGAATTGCTATCTCTCAGAAAAG GGCATCTTTTATGTCACTGTGGCTGGTTCGTGAGTTGCCCTCTCTTTCTT TGGCTCTCATACATCTTGAGAGGGTGCTCCCCCTCATCTCACCCTCTTGG CCATGCTAGGTACTGCAGTGGAGGGTTCAGAGGAGGCCCCGAGGGGAGAT AGGTGGGTTGGACCCCTTTATAAACCTTGCCGTCTTCTGTCCCCCTCAAC GCGAGCCACGTGCACTGATCTGCCTTGATTCCCGTAGCCTATGTAATCGT GAGTTATCTTTGAGCGCTGGACGCTGCTTCACCTCTTGATCCCCTGGTAC ATGAGATCTGCCACTGCCAGCCTACCTCCCGGCTGCAAGTTCGGTGAATT AAGTGAACTAAGCGCGAGGGCATTGCAGGAAGCGCTTTGCTTTTGAGAGC TACAAGACTGTTGCCGGTGATGGCAACCAGATAGGCGATGGCTACGTGCC GGAGGGGTCAGCCCACCTTGATGGTGCAGCACTCACTCATCAGCCCCCCT TCAATGCACTAGCTCAGCACCTCTTCCTCGACTCCATCTGCCATGCAGCC CCTCGTTCATTCCCCCGCACTCAATAGCTGCAAGACCGGCTGCCTTGTTG CAATAGACTGCAGTAGATGTATGGCAGTACCACTCACAACACATTCGTCA TTTAAGGTGCCGTCCAAATTAGTCTCAAGGATGTCTATCACTCAGTGGAC ACCCCGGAGATGTGGTATGGTAGTGAAAAGGTGGTGGACCGATGGCTTGA GGTAAGCCGTTCAGGTTGACTAACACGGCTGGCTCGACCCTCTATACAGC CCACCTGCCTCGCCTGGCATCAGCTATGACTATGTTTGTATCACTGCCCT GACCAGTGCTGTGAGCATAAGACGTGTGCGTTCTGCCTTCCATTCACTGA CAGATGCTTCCTTGTTTAAGCTACCTTACCCTAAATCTAACATGTTGCTG CCGCTTAATTAATTGCAGGAGGCCCTGCGCGTCCAGCAGGAGAAGCATGA CGAGGCTGCCAGATTACATGCATAGCTCTCACACGTAGCTGGGGCAGGGA AAAGTACCTTTGTAGACGGCTGGTGTTGGCCTAATAGGCCAGGCCCTCTC TGAGCACCTTGTGCTCGTGGTGATGTGAGCCTTGAGGCCTTGAGAGAGGT GCCCCAAGGGTTCGGAATAAGCAAGTAACGGCGTA
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Coding sequence (CDS) from alignment at C-australica_Contig_98:24372..26906+

>mRNA_C-australica_Contig_98.5.4 ID=mRNA_C-australica_Contig_98.5.4|Name=mRNA_C-australica_Contig_98.5.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=852bp|location=Sequence derived from alignment at C-australica_Contig_98:24372..26906+ (Chrysoparadoxa australica CS_1217)
ATGGGAGTCTTGAAGATCGTGATGGGCTGCCTCGCGCTTTTGCGTGCTGT
AGAGGGACTGGTGATAGGGCATAACATCCCCTATGTAATCCTTCCCGGCT
TTGGGAACTGCGCTCAAGACTACGTTGACCCCTTCAACAAGGGGGAGGAA
GGCCTGGTGGGGTCCCTGGAGCAGCGAGGGGTGCCAAGCTTCGTCTTGCC
GCTTAAAAGGTCAGACTGGTTCAAGGTGTTAAGAGGCCTGGGCTCCAAGG
ATTTCTGGGAAGGGAAGGCTCCACCAACAGGACCAGCATACAAATGGTAC
CTGGACTTGGTCAAGAAGACGGTGGATCAAGCTAGAGAGACCTGTGGCTC
TGATCGTGTGGTGTTGTGCGGCCACAGTGCAGGCGGATGGTTGGGAAGGG
CTGTCATGGGGGATGGCACCTGGTCTGAAGGGAAGGCCACAAGTGATGTG
GTGGCTGGATTGGTGACTCTTGGTGCTCCCCACTTCCCGCCACCGGTAGA
GACAACAAATGACATGACAAGAGGGGCCCTGACATTCACATCTAAGATGT
ACCCGAATTGCTATCTCTCAGAAAAGGGCATCTTTTATGTCACTGTGGCT
GGTACTGCAGTGGAGGGTTCAGAGGAGGCCCCGAGGGGAGATAGGTGGCG
CTTTGCTTTTGAGAGCTACAAGACTGTTGCCGGTGATGGCAACCAGATAG
GCGATGGCTACGTGCCGGAGGGGTCAGCCCACCTTGATGGTGCCGTCCAA
ATTAGTCTCAAGGATGTCTATCACTCAGTGGACACCCCGGAGATGTGGTA
TGGTAGTGAAAAGGTGGTGGACCGATGGCTTGAGGTAAGCCGTTCAGGTT
GA
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