mRNA_C-australica_Contig_98.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.2.1
Unique NamemRNA_C-australica_Contig_98.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_98.2.1 vs. uniprot
Match: A0A835YXZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-5
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 3 
Query:   27 SDRVLHEAVYALEDAARVCIQPELQRLTHF-HSMRVHEHAAPDGCRVIRIALLLRSRANIDSVLRSIGTGCFLCEILSDVHMD 272
            S++ L  A  +L+    V + PELQRL HF H+          G R +RI  +    A++D VLR +G GC L +I+ ++ +D
Sbjct:   37 SEQALQTATDSLDKVLTVFLVPELQRLPHFQHTEVTLSPPGAGGIRTVRIRAIFNKNAHLDDVLRRLGIGCRLADIIPELSID 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YXZ0_9STRA1.170e-534.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:9968..11855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size572
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-11_001660.1
Cds size558
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.2.1prot_C-australica_Contig_98.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 9982..11855 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.7223024-UTR-C-australica_Contig_98:9967..99811682588845.7223024-UTR-C-australica_Contig_98:9967..9981Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 9968..9981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.7335331-CDS-C-australica_Contig_98:9981..100011682588845.7335331-CDS-C-australica_Contig_98:9981..10001Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 9982..10001 +
1682588845.741773-CDS-C-australica_Contig_98:10280..103751682588845.741773-CDS-C-australica_Contig_98:10280..10375Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 10281..10375 +
1682588845.75621-CDS-C-australica_Contig_98:10598..106631682588845.75621-CDS-C-australica_Contig_98:10598..10663Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 10599..10663 +
1682588845.7678757-CDS-C-australica_Contig_98:10786..108891682588845.7678757-CDS-C-australica_Contig_98:10786..10889Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 10787..10889 +
1682588845.7780037-CDS-C-australica_Contig_98:11064..111651682588845.7780037-CDS-C-australica_Contig_98:11064..11165Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 11065..11165 +
1682588845.7889335-CDS-C-australica_Contig_98:11398..114731682588845.7889335-CDS-C-australica_Contig_98:11398..11473Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 11399..11473 +
1682588845.802031-CDS-C-australica_Contig_98:11756..118551682588845.802031-CDS-C-australica_Contig_98:11756..11855Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 11757..11855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.2.1

>prot_C-australica_Contig_98.2.1 ID=prot_C-australica_Contig_98.2.1|Name=mRNA_C-australica_Contig_98.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=186bp
MNETSDRVLHEAVYALEDAARVCIQPELQRLTHFHSMRVHEHAAPDGCRV
IRIALLLRSRANIDSVLRSIGTGCFLCEILSDVHMDFFCPLPLSDIFELR
KCVLDRKMSCSFEITVSYARDIIVKLLEEWVTLLEHSAYQPQVDSEEHNE
EREFHQHRTTDADILPGLQHPLKPPKYLQEFPYHR*
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mRNA from alignment at C-australica_Contig_98:9968..11855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.2.1 ID=mRNA_C-australica_Contig_98.2.1|Name=mRNA_C-australica_Contig_98.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1888bp|location=Sequence derived from alignment at C-australica_Contig_98:9968..11855+ (Chrysoparadoxa australica CS_1217)
TGGACCTAGATGTGATGAACGAGACCAGTGACAGGTGATAAGCCCCGTTC
TTTCGCCTTCTGCGCATGCTGCATGCGGATGAAGCGGAGCCCACCCTTTC
AGTACGGCCAATCCGAAGTGTTCACACCCAGCAAAGGGTTGGGCATCCTC
ATCTGATTCACTTAAGCTCTCCAAACTGGGAGCCATGGCCTGGGATGATA
TCTTGACCTGCACTCATTGATGGGCATGTGCTCTAGTCCATGTGCCTATG
AAGAATATAGTATTAATTAGGAGACGTACGGCCCAATTTCACGACATGAA
CTTACCATCTCAGAGTACTGCACGAGGCAGTGTATGCCTTGGAGGACGCG
GCAAGGGTATGCATCCAGCCAGAGCTGCAGAGGCTGACTCACTTTCATAG
CATGAGAGGTAACCAGAGCATCGGATGGCCTAACTCTCAGGCTCCTTGCT
GCGAATTAGTGAGGGCTGAGAACATCTCTGAGAGTTGGTCTAGAGGATCA
GCCTACTGCTGTCTCATGGGAAGGGACCTGGATTTACTTCTGGAGCAGTC
ATATAATTGGATGGATGGATGGATGCGTGTATATGGTAGCAATGGTGGCT
TGATAGTCTGATAGCCCTCCATGCCCTACAGTGCACGAGCATGCTGCTCC
TGATGGCTGCCGCGTGATCCGAATAGCCCTTCTCTTGCGCTCCAGGGTGA
GTCCTCGTGCTTTATGTGACCATCCTCTAATCACCGCACCATCCCACGGC
CCTTGCCCCATAGCTTGTGCATCACCCTCCCTGGCTAAAGCATTTGCCAC
TTGTTGCTTTTGTGCCCAGGCAAACATTGACTCGGTGTTGAGAAGCATCG
GGACCGGGTGCTTCCTGTGCGAGATACTTTCTGACGTTCATATGGACTTC
TTCTGCCCTCTCCCTCTCTCTGGTTAGTGAGGAATCGCTCTAATCTCTCT
TGATGCCCACCGGGATCCTTCTTATAGCAAGGGATGTGTGGGTAACGCCA
AGGGTGTGAGCTAGTAGAGAAAACTTAGCTTGGCTCTCGCTCATCATAGC
ACTTGCTCCCTCTCATCCTCTTGTCACTTGTCCCTACCTTGCCTCAGACA
TCTTTGAGCTTCGTAAGTGTGTGTTGGACCGGAAGATGAGCTGCTCCTTT
GAAATAACTGTGTCCTATGCTAGAGACATCATAGTCAAACTATTGGAGGT
GAGGGAAATGCCGAGTATGAGTGCATGAGCGTGGATAGTAAAGTAGCGAT
TTGATTGATTCATTGATTGATTGAGTGAGTGAGTGAGTGTGCTTGCAATT
GTTCAGCTACTTCTGCTCATTTAATGCCAGTATATCAAACCATAGCACAC
GGACCTTGCACGTGCCATTTAAGCCAGAGCGTCATTGCCTGCCTCACTGC
CAACTGTCTGATGACGTTTAATGCCTCTCAGGAGTGGGTGACTCTACTGG
AGCATAGTGCGTACCAGCCCCAAGTTGACTCAGAAGAGCACAATGAGGAG
AGGGAGGTGAGTCAGTGAGATAGCCATAAACAGTCAAACTACTAGTCCCC
ACTTGGATCAGATGTACTCAAGTGAAAGAGCTGCATGTTGGTAGAATGCC
CCCTGCTGCACCTGAACACCAAGGGAGCCATCTCATCCTCGGAAGCAATG
CCGTGTCAGTCACTCATTGTGCATGCCCTACACTCGCGCGAGCTCAAGTT
GGATAACGCTCCAGATGGGCCAGCACCTCTGCCGTCAACCAGTGTGGCTT
GCCTGTGTGACTAATTATGGCATGACCTTTCTCCGCCAGTTTCATCAGCA
CCGCACCACGGATGCTGATATATTGCCAGGCCTGCAGCATCCATTAAAGC
CTCCCAAGTACCTGCAGGAATTTCCCTACCATCGGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_98:9968..11855+

>mRNA_C-australica_Contig_98.2.1 ID=mRNA_C-australica_Contig_98.2.1|Name=mRNA_C-australica_Contig_98.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=558bp|location=Sequence derived from alignment at C-australica_Contig_98:9968..11855+ (Chrysoparadoxa australica CS_1217)
ATGAACGAGACCAGTGACAGAGTACTGCACGAGGCAGTGTATGCCTTGGA
GGACGCGGCAAGGGTATGCATCCAGCCAGAGCTGCAGAGGCTGACTCACT
TTCATAGCATGAGAGTGCACGAGCATGCTGCTCCTGATGGCTGCCGCGTG
ATCCGAATAGCCCTTCTCTTGCGCTCCAGGGCAAACATTGACTCGGTGTT
GAGAAGCATCGGGACCGGGTGCTTCCTGTGCGAGATACTTTCTGACGTTC
ATATGGACTTCTTCTGCCCTCTCCCTCTCTCTGACATCTTTGAGCTTCGT
AAGTGTGTGTTGGACCGGAAGATGAGCTGCTCCTTTGAAATAACTGTGTC
CTATGCTAGAGACATCATAGTCAAACTATTGGAGGAGTGGGTGACTCTAC
TGGAGCATAGTGCGTACCAGCCCCAAGTTGACTCAGAAGAGCACAATGAG
GAGAGGGAGTTTCATCAGCACCGCACCACGGATGCTGATATATTGCCAGG
CCTGCAGCATCCATTAAAGCCTCCCAAGTACCTGCAGGAATTTCCCTACC
ATCGGTAA
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