mRNA_C-australica_Contig_98.18.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.18.1
Unique NamemRNA_C-australica_Contig_98.18.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:59952..60473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size298
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.6599333-CDS-C-australica_Contig_98:59951..599821682588845.6599333-CDS-C-australica_Contig_98:59951..59982Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 59952..59982 +
1682588845.6701145-CDS-C-australica_Contig_98:60048..601401682588845.6701145-CDS-C-australica_Contig_98:60048..60140Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 60049..60140 +
1682588845.6811402-CDS-C-australica_Contig_98:60298..604511682588845.6811402-CDS-C-australica_Contig_98:60298..60451Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 60299..60451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.6917462-UTR-C-australica_Contig_98:60451..604731682588845.6917462-UTR-C-australica_Contig_98:60451..60473Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 60452..60473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.18.1prot_C-australica_Contig_98.18.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 59952..60451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.18.1

>prot_C-australica_Contig_98.18.1 ID=prot_C-australica_Contig_98.18.1|Name=mRNA_C-australica_Contig_98.18.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=92bp
MESKSPKSTEGSGSGSVDGLSINGKSGRERGGHERALATQQAMHSTITGL
AISVPANPSQGVVHGASLLEAAASGRVDQLEEAMEAEKLHG*
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mRNA from alignment at C-australica_Contig_98:59952..60473+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.18.1 ID=mRNA_C-australica_Contig_98.18.1|Name=mRNA_C-australica_Contig_98.18.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=522bp|location=Sequence derived from alignment at C-australica_Contig_98:59952..60473+ (Chrysoparadoxa australica CS_1217)
ATGGAAAGCAAGTCCCCAAAGAGCACAGAAGGTCCCACACATTCTTTTCT
TCATGTTTGCCATTCTCAAGCTCAATTGCATTCATTCACTCACCCAGGCT
CAGGCTCAGGCTCTGTAGACGGCTTGAGCATTAACGGAAAATCTGGAAGG
GAGAGAGGAGGGCATGAGAGGGCTTTAGCAACCCAGCAGGTCATTCAATC
ACTGAAGAATTCTGAACACCTGTGTATATATACGCTCAATAGCTTTGTTC
TCTTATTGCTACCAAGAAATGGCTGCTTCTTCCTGACAACCCTCTAACTC
GCCGTCTTCTCAATCATACCTAACAACCACCACCGCTGCCAACACAGGCT
ATGCATTCAACCATAACTGGCCTGGCCATATCAGTGCCAGCAAACCCCTC
ACAAGGCGTGGTACATGGTGCATCCCTGCTTGAAGCAGCTGCCTCCGGGA
GGGTAGACCAGCTGGAAGAGGCAATGGAGGCTGAGAAACTGCACGGGTGA
ACTCCACATGACGCCACACCCC
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Coding sequence (CDS) from alignment at C-australica_Contig_98:59952..60473+

>mRNA_C-australica_Contig_98.18.1 ID=mRNA_C-australica_Contig_98.18.1|Name=mRNA_C-australica_Contig_98.18.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=276bp|location=Sequence derived from alignment at C-australica_Contig_98:59952..60473+ (Chrysoparadoxa australica CS_1217)
ATGGAAAGCAAGTCCCCAAAGAGCACAGAAGGCTCAGGCTCAGGCTCTGT
AGACGGCTTGAGCATTAACGGAAAATCTGGAAGGGAGAGAGGAGGGCATG
AGAGGGCTTTAGCAACCCAGCAGGCTATGCATTCAACCATAACTGGCCTG
GCCATATCAGTGCCAGCAAACCCCTCACAAGGCGTGGTACATGGTGCATC
CCTGCTTGAAGCAGCTGCCTCCGGGAGGGTAGACCAGCTGGAAGAGGCAA
TGGAGGCTGAGAAACTGCACGGGTGA
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