mRNA_C-australica_Contig_98.16.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.16.1
Unique NamemRNA_C-australica_Contig_98.16.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A6V2HSA6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HSA6_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.860e-60
Identity = 125/309 (40.45%), Postives = 181/309 (58.58%), Query Frame = 3
Query:  297 VVLMYGRTTATAGLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNC--------HGVGEENRPRPQWQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA--------NKGAE---GALKVRVTYE---KDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGGVMR---------DEYQG---MEDTSKP----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES 1103
            VV +YG T    GLETCQ FRD+      +I PAG++NTGTNL+YE L +NC        HG+        ++QVPWGKH P SWR N+ +    K  DQTA LP+V IKDP TW+ SMCR+ Y  +FW  + +    HCP+L         NK  E    ++KV + Y+   +D + + +SL HLWN+WY +WL+V  FP L+VRFEDLLF  E  + ++C C GGVM          D+ QG   +ED++K     H G  G + A+ + G  + R+E +T+++M+F ++   + ++++FHY +P S
Sbjct:  158 VVKLYGATPRILGLETCQAFRDTVKQQDAFIAPAGMFNTGTNLIYEYLEQNCNLPDKVRVHGIVSRGM---RFQVPWGKHAPASWRLNHFAKDAPKSIDQTAFLPIVAIKDPFTWMQSMCRHGY-AAFWPHSKQ----HCPNLVPMYPYEEQNKFGEVNTDSVKVGLKYDAYSQDRIIY-DSLAHLWNEWYAEWLNVTHFPFLVVRFEDLLFHAEAVITEVCHCGGGVMEPFSMRKGKLDDSQGFQYIEDSAKGGQKIHEGSSGFATAITKVGE-KIRMEQYTEEDMEFAKKVLRKDIMEVFHYTMPSS 456          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: K0R1Y6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1Y6_THAOC)

HSP 1 Score: 211 bits (537), Expect = 2.050e-59
Identity = 118/289 (40.83%), Postives = 166/289 (57.44%), Query Frame = 3
Query:  297 VVLMYGRTTATAGLETCQRFRDSAPL-NQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ-------WQVPWGKHKP-VSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLAN---KGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKP----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES*VGG 1115
            VV MYG      GL+TC+R+R S    ++ IGPAG++NTGTNLL+EL+  NC       RPR +       WQVPWGKH P  + R   I+    K   Q   +PVVLIKDP TW+ S CR++Y  +FW  +    E HCP+L     K  +   +VRV Y  ++  + ESL+ +WNKWYE+W D  FP L  RFEDLLF  E+  R+ C C GG+  D++Q +ED++KP    H G  G   A+ +YG  +KR+ G+TD++  +  ++    ++  + Y  P    GG
Sbjct:  261 VVEMYGEEPIIEGLDTCERYRASVDAADRMIGPAGMFNTGTNLLFELMKTNCRIAEARLRPRREPRQNGMRWQVPWGKHNPPTTHRFKNIAKAWGKGIKQDEFMPVVLIKDPYTWMGSQCRHKY-TTFWGHD----EEHCPNLIRWRVKDRDVPSEVRVKYALEMKIY-ESLLDMWNKWYEEWDDQTFPHLTTRFEDLLFHGEEVTRKACECVGGIFTDDFQYVEDSAKPARGIHKGANGLVKAMMQYGDPKKRLVGYTDRDRWYSSKNMDTALMSKYGYKPPPLPAGG 543          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2EX04_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EX04_TRICV)

HSP 1 Score: 203 bits (516), Expect = 1.900e-58
Identity = 116/293 (39.59%), Postives = 161/293 (54.95%), Query Frame = 3
Query:  291 SGVVLMYGRTTATAGLETCQRFRDSAPLNQY-IGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP-----QWQVPWGKHKPVSWRGNYIS-LPRYKLQDQ---TAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRD-------EYQGMEDTSKPHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097
            S    +YGR+   +GL TC  FRDS P ++  +GPAG++NTGTNLL E+LL      G     R      +WQVPWGKH P SWRG ++S + R +  D    T  LPV +IKDP  W+ SMCR+ Y V+F     +   +HCP+L       NK        +V Y K  VT H SL H+WN W   + DV ++PRL+VR+EDLL   E   + IC CAGG +R        + + ++   + H G  G  AAL RYGS E+RVEG+ + ++ +  +H    ++  + Y  P
Sbjct:   47 SDYAALYGRSPRISGLGTCGTFRDSVPSHRRSVGPAGMFNTGTNLLNEMLLHCRVAAGGRASFRESIFGVRWQVPWGKHTPASWRGRHVSEIDRKRGSDPPNATEVLPVAIIKDPYGWMGSMCRHTYSVNF-----RKSSIHCPNLVGIEGDKNKKVGEPYMAQVRYSKFNVTKHASLAHIWNDWNGAYHDVADYPRLVVRYEDLLLHPETVTKAICDCAGGTLRTGPGGFALQARSVKGDERAHWGSSGLIAALRRYGSEERRVEGYDEADLRYAAEHLDGELMKAYGYSHP 334          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S1Z084_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z084_TRICV)

HSP 1 Score: 199 bits (506), Expect = 8.660e-57
Identity = 113/293 (38.57%), Postives = 165/293 (56.31%), Query Frame = 3
Query:  291 SGVVLMYGRTTATAGLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ-----WQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLANKGAE-----------GALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGG-VMRDEYQGMEDTSKP-----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097
            S V  MYG      GL+TC+RF+   P  + YIGPAG +N+GTNL+ ELL+ NC    ++ +  PQ     WQVPWGKH PVS R + +     K+  +   LPVV IKDP  W+ SMCR+RY  S W         HCP+L    A+           G + V V Y+  +VT H SL+  WN WY D+  V  FPRL+VR EDL+F  E   + +C C GG ++ D  + + D++K      H G  G  +A+ RYG+ EKR++G T+ +++F  ++  + +++++ Y +P
Sbjct:   74 SDVASMYGSEPIIVGLDTCERFQTEIPPPEAYIGPAGTFNSGTNLMAELLIANCALPEKQKKYGPQRAGMRWQVPWGKHPPVSQRLHNVGENEKKVVQEHV-LPVVTIKDPYFWMGSMCRHRYSAS-WQHTS-----HCPNLVPSDADRGQGIKGNNEDGGIPVTVKYKDTIVTEHNSLVGHWNDWYGDYQAVTSFPRLIVRVEDLIFHPEYVTKAVCECGGGKLLYDTVKLIGDSAKQGGGAVHKGSSGLLSAMARYGNPEKRLDGMTEDDLNFAEKYLRKDLMEIYGYKLP 359          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2EJN6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJN6_TRICV)

HSP 1 Score: 197 bits (502), Expect = 1.970e-56
Identity = 111/283 (39.22%), Postives = 161/283 (56.89%), Query Frame = 3
Query:  306 MYGRTTATAGLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP-----QWQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLANKG-AEGA-----------LKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRD---EYQG-MEDTSKPHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHY 1088
            MYG  T  AG+ETC+ FR S      +IG AG++NTGTNLL +LL++NC+   +  +        + QVPWGKH PVSWRG +++    +  D  + LP V++KDP TW+ SMCR++Y  ++    G     HCP+L   G AE A           + VRV Y  D  T H SL HLWN WY +++D +FPR+ VRFEDLL   E+TV ++C C GG+MR+   +YQ  +    K H G      A+ RY +   RV  F ++++ +     ++ ++ +F Y
Sbjct:   53 MYGSETNIAGMETCEVFRSSVKNEDAFIGVAGMFNTGTNLLSDLLVKNCYLPEKVKKLGDIKIGMRGQVPWGKHSPVSWRGGWVAEGGAEGVDFDSVLPAVVVKDPYTWMGSMCRHKYTANWPHFEG-----HCPNLVPVGDAEKADRRIAEAGGESVPVRVGYPGDKSTKHTSLAHLWNDWYREYVDSDFPRIFVRFEDLLLRPERTVTEVCHCGGGLMREGGFQYQAEVAKEGKAHQGSSSLIGAMTRYTNATARVMPFREEDLAYAHTALAEDLMGMFGY 330          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S4NB63_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NB63_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.390e-56
Identity = 114/299 (38.13%), Postives = 157/299 (52.51%), Query Frame = 3
Query:  333 GLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ--------WQVPWGKHKPVSWRG---NYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA-----------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDW-LDVEFPRLLVRFEDLLFAQEQTVRQICSCAGG-VMRDEYQGMEDTSK----PHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES*VGGFNCLILDFI 1142
            GL+TC+ FR S P NQ YIGPAG++NTGTN+L  LL +NC  +   N    Q        WQVPWGKH   SWRG    Y+   R    D +  LPVV +KDP +W+ SMCR+ Y  + W    +    HCP+L              G E  + VRV ++ + VTHH SL+ LWN WY  +  D  +PRL+VR+ED+L   E+ +  +C CAGG    D +   +   K    PH G  G  +AL RYG+V KR EGF+  ++++        ++  + Y +P+     F   I   I
Sbjct:  138 GLDTCEDFRSSIPRNQRYIGPAGMFNTGTNILASLLEKNCR-IARTNETNTQGHDRYGMRWQVPWGKHVFASWRGVNVAYVDAKRGIFIDPSLVLPVVTVKDPYSWMGSMCRHPY-AAIWQHRSE----HCPNLLPTKDDRKKGIRGTGPENTISVRVRFKAENVTHHSSLVGLWNDWYRAYHSDASYPRLIVRYEDILVHPERVIEAVCRCAGGDTNMDGFTFSDVNGKGNHGPHAGSNGLISALIRYGNVSKRQEGFSSDDLNYAENVLDSNLMQAYKYSLPQIRHNEFQVTIQHHI 430          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2EAC1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAC1_TRICV)

HSP 1 Score: 193 bits (490), Expect = 6.110e-55
Identity = 107/292 (36.64%), Postives = 161/292 (55.14%), Query Frame = 3
Query:  291 SGVVLMYGRTTATAGLETCQRFRDSAP-LNQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP------QWQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA-----------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGG-VMRDEYQGMEDTSKP---HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097
            S    +YG      GLETC+R+R+S P   +YIG AG++N+GTNL+ ELLLRNCH + E+ +         +WQVPWGKH PVS R + ++     ++ +   LPV  IKDP  W+ SMCR+ Y  + W   G     HCP+L                +G + V V ++    T H SL+ LWN WY +++++  FPRL+VR+EDLL   E   + +C+C GG +M      + D++K    H G  G   +L RYG+ +KR +G T  ++ +  +H  + +L+   Y +P
Sbjct:   34 SDFTALYGHEPIIIGLETCERYRESLPPAERYIGVAGMFNSGTNLMAELLLRNCH-IPEKKKKYGRRKTGIEWQVPWGKHPPVSQRLHNVAHHHENVKQEDV-LPVATIKDPYFWMGSMCRHNYS-AVWKKKG-----HCPNLVPNEKDIQNGIKGNSIDGGINVTVKFKPPFFTEHNSLVGLWNDWYSEYMEITSFPRLIVRYEDLLLHPEAVTKSVCACGGGTLMHQNITLVADSAKEGPGHKGTSGLLDSLMRYGNPQKRTKGMTKDDLLYAEKHLRKDLLEALGYTLP 317          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S1C2K0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C2K0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.410e-54
Identity = 112/328 (34.15%), Postives = 170/328 (51.83%), Query Frame = 3
Query:  195 LPSAQSPDEVDNSPDAPGLKHSNAPATLGDQGSGVVLMYGRTTATAGLETCQRFRDSAPL-NQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ--------------------WQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGE--LHCPHLANKGAEGALKVRVTYEKDLVTH----HESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKPHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097
            LP++ SP++ D    A  LK    P  + +    +  MYGR     G++ C+RFR S P  ++++  AG+YNTGT++++  L + C   G++                          ++  WGKHK V+ RGN ++LP+Y+       LPVV+IKDP TWL SMCRN Y    W +     E    CP+L        + V  +  KD         +SL+H++N+WY +W D +FPRL+VR+EDLL   E+   ++C+CAGG     +     + K    G G   AL RYG+  KR+E FT   ++F ++H  Q++   FHYF+P
Sbjct:   49 LPASVSPEDQD----ANLLKSLGVPVGI-ELARDLDKMYGRDIFIDGIDRCERFRSSVPAKDRFVSAAGMYNTGTHVIFSYLDKYCELPGKDQTKVKNARDKLRKDAKIQEVMDSGILFETYWGKHKHVTDRGNVVTLPKYEGMPVDNLLPVVMIKDPFTWLSSMCRNPYN---WLEGRHYLEDGTQCPNLVENDEPVPVNVIYSMRKDRAQRPDMKFDSLVHMYNQWYSEWHDAKFPRLIVRYEDLLLHPEEITNRVCTCAGGHWSPNHPFELVSQKAKKYGTGLEGALARYGNATKRIEDFTTANLEFAKRHLDQKLFKKFHYFLP 368          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2KPM8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KPM8_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.230e-53
Identity = 109/292 (37.33%), Postives = 158/292 (54.11%), Query Frame = 3
Query:  297 VVLMYGRTTATAGLETCQRFRDSA-PLNQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP----------------QWQVPWGKHKP-VSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLAN---KGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKP----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097
            +V MYG      GL+TCQ +RD+  P  + +GPAG++NTGTNLL+EL+  NC+     N P                  +WQ PWGKH P  + RG  ++    K   QT   PVVLIKDP +W+ S CR++Y  +FW  +    E HCP+L     +  +    VRV Y  +    +ESL+ +WNKWYE+W +  FP L  RFEDLLF  E+  R  C C GG   D ++ +E ++KP    H G  G   A+ +YG   KR+ GF+D++  +  ++    +++ + Y  P
Sbjct:  202 IVSMYGDKPIIHGLDTCQTYRDTVKPEARMLGPAGMFNTGTNLLFELMKVNCNIKEARNVPSVDPLLPIKYREPRRNGMRWQAPWGKHNPPTTHRGRNVAKAWGKGITQTDFFPVVLIKDPYSWMGSQCRHKY-TAFWGHD----ENHCPNLIRWRVRDKDETAFVRVKYALEWA-QYESLLDMWNKWYEEWDEQTFPHLTTRFEDLLFHGEEVTRAACDCVGGEFTDNFKYVEGSAKPQLTVHKGSNGLVKAMLQYGDPSKRLTGFSDRDRTYASKNMDMELMNKYAYVPP 487          
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: B8CBL7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBL7_THAPS)

HSP 1 Score: 194 bits (493), Expect = 4.110e-52
Identity = 112/290 (38.62%), Postives = 163/290 (56.21%), Query Frame = 3
Query:  297 VVLMYGRTTATAGLETCQRFRDSA-PLNQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ-------WQVPWGKHKPVSW-RGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA-------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKP-----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES 1103
            VV MYG +    GLETC  +R    P ++ IGPAG++NTGTNLL+EL+  NC       RPR +       WQVPWGKH P S  R   ++    K   Q   +PVVLIKDP +W+ S CR++Y  +FW  +    E HCP+L        ++ AE  +K  +  ++     +ESL+ +WN+WY +W +  FP L  RFEDLLF  E+ V+  C C GGV  D ++ +ED++KP     H G  G   A+ +YG   KR+ GFT+++M +  +  +  +++ + Y  P S
Sbjct:  268 VVSMYGPSPIIHGLETCIPYRQMVKPEDRMIGPAGMFNTGTNLLFELMKVNCDIKEARRRPRREPRQNGMRWQVPWGKHNPPSTHRFKNVAKAWGKGIKQDDFMPVVLIKDPYSWMGSQCRHKY-TTFWGHD----EQHCPNLIRWRVTDHDEPAEVLVKFALEMKR-----YESLLDMWNQWYMEWEEQTFPALHTRFEDLLFHGEEVVKTACECVGGVFTDNFEYVEDSAKPNSFGIHKGSNGLVKAMLQYGDPSKRLTGFTERDMKYASKAMNVELMEHYGYVPPPS 547          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V2HSA6_9STRA1.860e-6040.45Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
K0R1Y6_THAOC2.050e-5940.83Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2EX04_TRICV1.900e-5839.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1Z084_TRICV8.660e-5738.57Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2EJN6_TRICV1.970e-5639.22Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4NB63_9STRA3.390e-5638.13Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2EAC1_TRICV6.110e-5536.64Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1C2K0_9STRA2.410e-5434.15Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2KPM8_9STRA2.230e-5337.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8CBL7_THAPS4.110e-5238.62Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:55690..57952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0R1Y6
Model size1200
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons9
Evalue7.86e-61
EggNOG OGs2C4V2@1|root,2RWXX@2759|Eukaryota,2XE5T@2836|Bacillariophyta
Cds size801
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.16.1prot_C-australica_Contig_98.16.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 55995..57858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.2432032-UTR-C-australica_Contig_98:55689..559941682588847.2432032-UTR-C-australica_Contig_98:55689..55994Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 55690..55994 +
1682588847.3764377-UTR-C-australica_Contig_98:57858..579521682588847.3764377-UTR-C-australica_Contig_98:57858..57952Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 57859..57952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.2582135-CDS-C-australica_Contig_98:55994..560391682588847.2582135-CDS-C-australica_Contig_98:55994..56039Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 55995..56039 +
1682588847.2714348-CDS-C-australica_Contig_98:56183..563241682588847.2714348-CDS-C-australica_Contig_98:56183..56324Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 56184..56324 +
1682588847.2802625-CDS-C-australica_Contig_98:56496..565621682588847.2802625-CDS-C-australica_Contig_98:56496..56562Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 56497..56562 +
1682588847.289029-CDS-C-australica_Contig_98:56765..568451682588847.289029-CDS-C-australica_Contig_98:56765..56845Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 56766..56845 +
1682588847.3052087-CDS-C-australica_Contig_98:56987..570991682588847.3052087-CDS-C-australica_Contig_98:56987..57099Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 56988..57099 +
1682588847.3227866-CDS-C-australica_Contig_98:57173..572451682588847.3227866-CDS-C-australica_Contig_98:57173..57245Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 57174..57245 +
1682588847.337755-CDS-C-australica_Contig_98:57400..575451682588847.337755-CDS-C-australica_Contig_98:57400..57545Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 57401..57545 +
1682588847.351615-CDS-C-australica_Contig_98:57637..576901682588847.351615-CDS-C-australica_Contig_98:57637..57690Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 57638..57690 +
1682588847.362828-CDS-C-australica_Contig_98:57771..578581682588847.362828-CDS-C-australica_Contig_98:57771..57858Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 57772..57858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.16.1

>prot_C-australica_Contig_98.16.1 ID=prot_C-australica_Contig_98.16.1|Name=mRNA_C-australica_Contig_98.16.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=267bp
MYGRTTATAGLETCQRFRDSAPLNQYIGPAGLYNTGTNLLYELLLRNCHG
VGEENRPRPQWQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDP
LTWLMSMCRNRYEVSFWADNGKLGELHCPHLANKGAEGALKVRVTYEKDL
VTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGG
VMRDEYQGMEDTSKPHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQH
ASQRVLDLFHYFIPES*
back to top

mRNA from alignment at C-australica_Contig_98:55690..57952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.16.1 ID=mRNA_C-australica_Contig_98.16.1|Name=mRNA_C-australica_Contig_98.16.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2263bp|location=Sequence derived from alignment at C-australica_Contig_98:55690..57952+ (Chrysoparadoxa australica CS_1217)
TTCAACTCCTACCGTCAATCAATCAAGATGAGGGCGCACAATAACCCTGA CGCGACTCTTACACACAGCACGACTCAATAACTAGGAGGCCGACCAAATC TTTGGCTTGGTGCTGTACGGTCCCACCACAGCAACAGCTGAGACCTGCGA GTTCATCCTATTGGCCATTGCCACCCCAGCACTCAAATCCTCCCCTCCCC TCTGCACAGTCCCCAGATGAAGTGGACAACAGCCCTGATGCACCGGGTCT CAAACACAGTAACGCCCCAGCAACTCTAGGCGACCAAGGCTCTGGTGTGG TGCTGATGTACGGTCGCACCACAGCAACAGCTGGCCTCGAGACATGCCAG GTCATCTTCCAGCCCCCCATTACCCAGTCACGGCGCTGGCATGCACTCAC TTGCTCACTTCCTTCCTCATAAGCTCACTTTAAACTCACTTTCAATTCAC TCAACTGAACTTCTCTTCCGCCTGCTTCTCTCCCTCCCCCACAGAGGTTT CGAGACAGTGCACCGCTAAATCAGTACATTGGCCCAGCTGGCTTGTACAA CACTGGCACAAACTTATTATATGAACTGCTACTTCGCAATTGCCATGGGG TAGGGGAGGAAAACAGACCAAGACCACAGTGGCAGGTGATGCTAACTCTC CTCCTTTATACATAATCTATTGTCCCTCTCACTCACCCGCACTGCTACTT CTTGATCCACCCTGCTTGGCCAATAATCAGCTCTTTCTTTCCCTTCAAAT ATTCTAATAATGTGCCACCTGTGTCCTCAACACTGATTCATCTTTGATCT CACCAAGGTGCCCTGGGGTAAACACAAACCTGTGTCCTGGCGAGGCAACT ACATCTCCTTACCCCGCTACAAGGTTAGTTTAAGTTAATGTCAGGGTTAG TGAAAGGGTCTGGCTAGGAGCTACAGTCTGCCTCTCACCTTCATTTGATC AGAGCCATCCCAAGCTCTGAGGGCAGGCACAGCTGGCTGCCTGCTGAGGC CCTGGTGGAGCTGGATTAGATGACACTTGATAGGATGACCTTGTGCTTAT GCATTGTGTTGCACCTCTGCCTTCAGTTGCAAGACCAGACAGCAGGGTTG CCTGTTGTATTGATTAAAGACCCCCTCACATGGTTGATGTCCATGTGCAG GAACAGGTTAGTTACGCAGCTCAGTCTTTGCAGTATACCTACCCGGCCAT CCTAAGAGCAGGCTTACTACTACTGGTAGTTTTAACCACTTTTAGTTTAT TCTTATTGCTAGTGTTATTACTGAAAGGCTGACTTACATGGCTCTTAGGT ATGAGGTGAGCTTTTGGGCTGACAATGGCAAGCTAGGCGAGCTCCATTGC CCTCACTTAGCCAACAAGGGTGCAGAGGGAGCCTTGAAAGTCCGCGTGAC CTACGAAAAGGTGACTGACAAGTGGGAGTGACCCCATTCTTTAACTAACC CTCACGTGGCAATGACTCTGGACCCTGATGTTAGGACCTGGTGACCCACC ATGAGTCGTTGATACACCTTTGGAACAAGTGGTATGAGGACTGGCTGGAC GTTGAGGTGAGGGTGTTTATGATATGGATACTACCGTGAGCGGTCCTGTG TCAACGAATAGCTGTGGGTCTCACTTTGCGTATGAGCTAACTGTCCTGCT GGGCGAAGAACGCTCTTACCATCCATACAGCCTCACGCTATTTCTACTTT GTGCGTGGCAGTTCCCAAGGCTGCTGGTGCGGTTTGAGGACCTGCTCTTC GCGCAAGAGCAGACAGTGAGACAGATTTGTTCATGCGCTGGAGGGGTCAT GCGAGATGAATATCAGGGGATGGAGGATACCTCCAAGCCCCACGGAGGAG GAGGGGGTAAGTGGGATACCCTGTATTTGCTAGCCCAACTCGGAGAATGT GAGGAGCCTATGCCTGACTGATACCCTGCTTGCCCGGAAATGCTGAAGGG AGGAGTGCTGCATTGGAGCGGTATGGATCTGTTGAGAAACGGGTTGAAGG GGTGAGTGCAGTCAGCTAGGTGACCCTGCCCTTTGGCCTTTAGCTTCCCT CAACTCACCAACCCTGCACCCCTCCTTCTAAGTTCACGGACCAAGAAATG GATTTCATTAGACAACATGCAAGCCAACGTGTCCTCGATCTGTTTCATTA CTTCATTCCTGAATCTTGAGTGGGAGGCTTTAATTGTTTGATTTTGGATT TTATATTCCTTTCTATTGAAGAAAAGAAGTTAGGCTGAAGGTGGTGAAAA TAATTAACTCCCC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_98:55690..57952+

>mRNA_C-australica_Contig_98.16.1 ID=mRNA_C-australica_Contig_98.16.1|Name=mRNA_C-australica_Contig_98.16.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=801bp|location=Sequence derived from alignment at C-australica_Contig_98:55690..57952+ (Chrysoparadoxa australica CS_1217)
ATGTACGGTCGCACCACAGCAACAGCTGGCCTCGAGACATGCCAGAGGTT
TCGAGACAGTGCACCGCTAAATCAGTACATTGGCCCAGCTGGCTTGTACA
ACACTGGCACAAACTTATTATATGAACTGCTACTTCGCAATTGCCATGGG
GTAGGGGAGGAAAACAGACCAAGACCACAGTGGCAGGTGCCCTGGGGTAA
ACACAAACCTGTGTCCTGGCGAGGCAACTACATCTCCTTACCCCGCTACA
AGTTGCAAGACCAGACAGCAGGGTTGCCTGTTGTATTGATTAAAGACCCC
CTCACATGGTTGATGTCCATGTGCAGGAACAGGTATGAGGTGAGCTTTTG
GGCTGACAATGGCAAGCTAGGCGAGCTCCATTGCCCTCACTTAGCCAACA
AGGGTGCAGAGGGAGCCTTGAAAGTCCGCGTGACCTACGAAAAGGACCTG
GTGACCCACCATGAGTCGTTGATACACCTTTGGAACAAGTGGTATGAGGA
CTGGCTGGACGTTGAGTTCCCAAGGCTGCTGGTGCGGTTTGAGGACCTGC
TCTTCGCGCAAGAGCAGACAGTGAGACAGATTTGTTCATGCGCTGGAGGG
GTCATGCGAGATGAATATCAGGGGATGGAGGATACCTCCAAGCCCCACGG
AGGAGGAGGGGGGAGGAGTGCTGCATTGGAGCGGTATGGATCTGTTGAGA
AACGGGTTGAAGGGTTCACGGACCAAGAAATGGATTTCATTAGACAACAT
GCAAGCCAACGTGTCCTCGATCTGTTTCATTACTTCATTCCTGAATCTTG
A
back to top