mRNA_C-australica_Contig_98.16.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A6V2HSA6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2HSA6_9STRA) HSP 1 Score: 211 bits (538), Expect = 1.860e-60 Identity = 125/309 (40.45%), Postives = 181/309 (58.58%), Query Frame = 3 Query: 297 VVLMYGRTTATAGLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNC--------HGVGEENRPRPQWQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA--------NKGAE---GALKVRVTYE---KDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGGVMR---------DEYQG---MEDTSKP----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES 1103 VV +YG T GLETCQ FRD+ +I PAG++NTGTNL+YE L +NC HG+ ++QVPWGKH P SWR N+ + K DQTA LP+V IKDP TW+ SMCR+ Y +FW + + HCP+L NK E ++KV + Y+ +D + + +SL HLWN+WY +WL+V FP L+VRFEDLLF E + ++C C GGVM D+ QG +ED++K H G G + A+ + G + R+E +T+++M+F ++ + ++++FHY +P S Sbjct: 158 VVKLYGATPRILGLETCQAFRDTVKQQDAFIAPAGMFNTGTNLIYEYLEQNCNLPDKVRVHGIVSRGM---RFQVPWGKHAPASWRLNHFAKDAPKSIDQTAFLPIVAIKDPFTWMQSMCRHGY-AAFWPHSKQ----HCPNLVPMYPYEEQNKFGEVNTDSVKVGLKYDAYSQDRIIY-DSLAHLWNEWYAEWLNVTHFPFLVVRFEDLLFHAEAVITEVCHCGGGVMEPFSMRKGKLDDSQGFQYIEDSAKGGQKIHEGSSGFATAITKVGE-KIRMEQYTEEDMEFAKKVLRKDIMEVFHYTMPSS 456
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: K0R1Y6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1Y6_THAOC) HSP 1 Score: 211 bits (537), Expect = 2.050e-59 Identity = 118/289 (40.83%), Postives = 166/289 (57.44%), Query Frame = 3 Query: 297 VVLMYGRTTATAGLETCQRFRDSAPL-NQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ-------WQVPWGKHKP-VSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLAN---KGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKP----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES*VGG 1115 VV MYG GL+TC+R+R S ++ IGPAG++NTGTNLL+EL+ NC RPR + WQVPWGKH P + R I+ K Q +PVVLIKDP TW+ S CR++Y +FW + E HCP+L K + +VRV Y ++ + ESL+ +WNKWYE+W D FP L RFEDLLF E+ R+ C C GG+ D++Q +ED++KP H G G A+ +YG +KR+ G+TD++ + ++ ++ + Y P GG Sbjct: 261 VVEMYGEEPIIEGLDTCERYRASVDAADRMIGPAGMFNTGTNLLFELMKTNCRIAEARLRPRREPRQNGMRWQVPWGKHNPPTTHRFKNIAKAWGKGIKQDEFMPVVLIKDPYTWMGSQCRHKY-TTFWGHD----EEHCPNLIRWRVKDRDVPSEVRVKYALEMKIY-ESLLDMWNKWYEEWDDQTFPHLTTRFEDLLFHGEEVTRKACECVGGIFTDDFQYVEDSAKPARGIHKGANGLVKAMMQYGDPKKRLVGYTDRDRWYSSKNMDTALMSKYGYKPPPLPAGG 543
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2EX04_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EX04_TRICV) HSP 1 Score: 203 bits (516), Expect = 1.900e-58 Identity = 116/293 (39.59%), Postives = 161/293 (54.95%), Query Frame = 3 Query: 291 SGVVLMYGRTTATAGLETCQRFRDSAPLNQY-IGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP-----QWQVPWGKHKPVSWRGNYIS-LPRYKLQDQ---TAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRD-------EYQGMEDTSKPHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097 S +YGR+ +GL TC FRDS P ++ +GPAG++NTGTNLL E+LL G R +WQVPWGKH P SWRG ++S + R + D T LPV +IKDP W+ SMCR+ Y V+F + +HCP+L NK +V Y K VT H SL H+WN W + DV ++PRL+VR+EDLL E + IC CAGG +R + + ++ + H G G AAL RYGS E+RVEG+ + ++ + +H ++ + Y P Sbjct: 47 SDYAALYGRSPRISGLGTCGTFRDSVPSHRRSVGPAGMFNTGTNLLNEMLLHCRVAAGGRASFRESIFGVRWQVPWGKHTPASWRGRHVSEIDRKRGSDPPNATEVLPVAIIKDPYGWMGSMCRHTYSVNF-----RKSSIHCPNLVGIEGDKNKKVGEPYMAQVRYSKFNVTKHASLAHIWNDWNGAYHDVADYPRLVVRYEDLLLHPETVTKAICDCAGGTLRTGPGGFALQARSVKGDERAHWGSSGLIAALRRYGSEERRVEGYDEADLRYAAEHLDGELMKAYGYSHP 334
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S1Z084_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z084_TRICV) HSP 1 Score: 199 bits (506), Expect = 8.660e-57 Identity = 113/293 (38.57%), Postives = 165/293 (56.31%), Query Frame = 3 Query: 291 SGVVLMYGRTTATAGLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ-----WQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLANKGAE-----------GALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGG-VMRDEYQGMEDTSKP-----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097 S V MYG GL+TC+RF+ P + YIGPAG +N+GTNL+ ELL+ NC ++ + PQ WQVPWGKH PVS R + + K+ + LPVV IKDP W+ SMCR+RY S W HCP+L A+ G + V V Y+ +VT H SL+ WN WY D+ V FPRL+VR EDL+F E + +C C GG ++ D + + D++K H G G +A+ RYG+ EKR++G T+ +++F ++ + +++++ Y +P Sbjct: 74 SDVASMYGSEPIIVGLDTCERFQTEIPPPEAYIGPAGTFNSGTNLMAELLIANCALPEKQKKYGPQRAGMRWQVPWGKHPPVSQRLHNVGENEKKVVQEHV-LPVVTIKDPYFWMGSMCRHRYSAS-WQHTS-----HCPNLVPSDADRGQGIKGNNEDGGIPVTVKYKDTIVTEHNSLVGHWNDWYGDYQAVTSFPRLIVRVEDLIFHPEYVTKAVCECGGGKLLYDTVKLIGDSAKQGGGAVHKGSSGLLSAMARYGNPEKRLDGMTEDDLNFAEKYLRKDLMEIYGYKLP 359
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2EJN6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJN6_TRICV) HSP 1 Score: 197 bits (502), Expect = 1.970e-56 Identity = 111/283 (39.22%), Postives = 161/283 (56.89%), Query Frame = 3 Query: 306 MYGRTTATAGLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP-----QWQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLANKG-AEGA-----------LKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRD---EYQG-MEDTSKPHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHY 1088 MYG T AG+ETC+ FR S +IG AG++NTGTNLL +LL++NC+ + + + QVPWGKH PVSWRG +++ + D + LP V++KDP TW+ SMCR++Y ++ G HCP+L G AE A + VRV Y D T H SL HLWN WY +++D +FPR+ VRFEDLL E+TV ++C C GG+MR+ +YQ + K H G A+ RY + RV F ++++ + ++ ++ +F Y Sbjct: 53 MYGSETNIAGMETCEVFRSSVKNEDAFIGVAGMFNTGTNLLSDLLVKNCYLPEKVKKLGDIKIGMRGQVPWGKHSPVSWRGGWVAEGGAEGVDFDSVLPAVVVKDPYTWMGSMCRHKYTANWPHFEG-----HCPNLVPVGDAEKADRRIAEAGGESVPVRVGYPGDKSTKHTSLAHLWNDWYREYVDSDFPRIFVRFEDLLLRPERTVTEVCHCGGGLMREGGFQYQAEVAKEGKAHQGSSSLIGAMTRYTNATARVMPFREEDLAYAHTALAEDLMGMFGY 330
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S4NB63_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NB63_9STRA) HSP 1 Score: 200 bits (509), Expect = 3.390e-56 Identity = 114/299 (38.13%), Postives = 157/299 (52.51%), Query Frame = 3 Query: 333 GLETCQRFRDSAPLNQ-YIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ--------WQVPWGKHKPVSWRG---NYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA-----------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDW-LDVEFPRLLVRFEDLLFAQEQTVRQICSCAGG-VMRDEYQGMEDTSK----PHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES*VGGFNCLILDFI 1142 GL+TC+ FR S P NQ YIGPAG++NTGTN+L LL +NC + N Q WQVPWGKH SWRG Y+ R D + LPVV +KDP +W+ SMCR+ Y + W + HCP+L G E + VRV ++ + VTHH SL+ LWN WY + D +PRL+VR+ED+L E+ + +C CAGG D + + K PH G G +AL RYG+V KR EGF+ ++++ ++ + Y +P+ F I I Sbjct: 138 GLDTCEDFRSSIPRNQRYIGPAGMFNTGTNILASLLEKNCR-IARTNETNTQGHDRYGMRWQVPWGKHVFASWRGVNVAYVDAKRGIFIDPSLVLPVVTVKDPYSWMGSMCRHPY-AAIWQHRSE----HCPNLLPTKDDRKKGIRGTGPENTISVRVRFKAENVTHHSSLVGLWNDWYRAYHSDASYPRLIVRYEDILVHPERVIEAVCRCAGGDTNMDGFTFSDVNGKGNHGPHAGSNGLISALIRYGNVSKRQEGFSSDDLNYAENVLDSNLMQAYKYSLPQIRHNEFQVTIQHHI 430
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2EAC1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAC1_TRICV) HSP 1 Score: 193 bits (490), Expect = 6.110e-55 Identity = 107/292 (36.64%), Postives = 161/292 (55.14%), Query Frame = 3 Query: 291 SGVVLMYGRTTATAGLETCQRFRDSAP-LNQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP------QWQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA-----------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDV-EFPRLLVRFEDLLFAQEQTVRQICSCAGG-VMRDEYQGMEDTSKP---HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097 S +YG GLETC+R+R+S P +YIG AG++N+GTNL+ ELLLRNCH + E+ + +WQVPWGKH PVS R + ++ ++ + LPV IKDP W+ SMCR+ Y + W G HCP+L +G + V V ++ T H SL+ LWN WY +++++ FPRL+VR+EDLL E + +C+C GG +M + D++K H G G +L RYG+ +KR +G T ++ + +H + +L+ Y +P Sbjct: 34 SDFTALYGHEPIIIGLETCERYRESLPPAERYIGVAGMFNSGTNLMAELLLRNCH-IPEKKKKYGRRKTGIEWQVPWGKHPPVSQRLHNVAHHHENVKQEDV-LPVATIKDPYFWMGSMCRHNYS-AVWKKKG-----HCPNLVPNEKDIQNGIKGNSIDGGINVTVKFKPPFFTEHNSLVGLWNDWYSEYMEITSFPRLIVRYEDLLLHPEAVTKSVCACGGGTLMHQNITLVADSAKEGPGHKGTSGLLDSLMRYGNPQKRTKGMTKDDLLYAEKHLRKDLLEALGYTLP 317
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S1C2K0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C2K0_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.410e-54 Identity = 112/328 (34.15%), Postives = 170/328 (51.83%), Query Frame = 3 Query: 195 LPSAQSPDEVDNSPDAPGLKHSNAPATLGDQGSGVVLMYGRTTATAGLETCQRFRDSAPL-NQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ--------------------WQVPWGKHKPVSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGE--LHCPHLANKGAEGALKVRVTYEKDLVTH----HESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKPHGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097 LP++ SP++ D A LK P + + + MYGR G++ C+RFR S P ++++ AG+YNTGT++++ L + C G++ ++ WGKHK V+ RGN ++LP+Y+ LPVV+IKDP TWL SMCRN Y W + E CP+L + V + KD +SL+H++N+WY +W D +FPRL+VR+EDLL E+ ++C+CAGG + + K G G AL RYG+ KR+E FT ++F ++H Q++ FHYF+P Sbjct: 49 LPASVSPEDQD----ANLLKSLGVPVGI-ELARDLDKMYGRDIFIDGIDRCERFRSSVPAKDRFVSAAGMYNTGTHVIFSYLDKYCELPGKDQTKVKNARDKLRKDAKIQEVMDSGILFETYWGKHKHVTDRGNVVTLPKYEGMPVDNLLPVVMIKDPFTWLSSMCRNPYN---WLEGRHYLEDGTQCPNLVENDEPVPVNVIYSMRKDRAQRPDMKFDSLVHMYNQWYSEWHDAKFPRLIVRYEDLLLHPEEITNRVCTCAGGHWSPNHPFELVSQKAKKYGTGLEGALARYGNATKRIEDFTTANLEFAKRHLDQKLFKKFHYFLP 368
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: A0A7S2KPM8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KPM8_9STRA) HSP 1 Score: 194 bits (492), Expect = 2.230e-53 Identity = 109/292 (37.33%), Postives = 158/292 (54.11%), Query Frame = 3 Query: 297 VVLMYGRTTATAGLETCQRFRDSA-PLNQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRP----------------QWQVPWGKHKP-VSWRGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLAN---KGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKP----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIP 1097 +V MYG GL+TCQ +RD+ P + +GPAG++NTGTNLL+EL+ NC+ N P +WQ PWGKH P + RG ++ K QT PVVLIKDP +W+ S CR++Y +FW + E HCP+L + + VRV Y + +ESL+ +WNKWYE+W + FP L RFEDLLF E+ R C C GG D ++ +E ++KP H G G A+ +YG KR+ GF+D++ + ++ +++ + Y P Sbjct: 202 IVSMYGDKPIIHGLDTCQTYRDTVKPEARMLGPAGMFNTGTNLLFELMKVNCNIKEARNVPSVDPLLPIKYREPRRNGMRWQAPWGKHNPPTTHRGRNVAKAWGKGITQTDFFPVVLIKDPYSWMGSQCRHKY-TAFWGHD----ENHCPNLIRWRVRDKDETAFVRVKYALEWA-QYESLLDMWNKWYEEWDEQTFPHLTTRFEDLLFHGEEVTRAACDCVGGEFTDNFKYVEGSAKPQLTVHKGSNGLVKAMLQYGDPSKRLTGFSDRDRTYASKNMDMELMNKYAYVPP 487
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Match: B8CBL7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBL7_THAPS) HSP 1 Score: 194 bits (493), Expect = 4.110e-52 Identity = 112/290 (38.62%), Postives = 163/290 (56.21%), Query Frame = 3 Query: 297 VVLMYGRTTATAGLETCQRFRDSA-PLNQYIGPAGLYNTGTNLLYELLLRNCHGVGEENRPRPQ-------WQVPWGKHKPVSW-RGNYISLPRYKLQDQTAGLPVVLIKDPLTWLMSMCRNRYEVSFWADNGKLGELHCPHLA-------NKGAEGALKVRVTYEKDLVTHHESLIHLWNKWYEDWLDVEFPRLLVRFEDLLFAQEQTVRQICSCAGGVMRDEYQGMEDTSKP-----HGGGGGRSAALERYGSVEKRVEGFTDQEMDFIRQHASQRVLDLFHYFIPES 1103 VV MYG + GLETC +R P ++ IGPAG++NTGTNLL+EL+ NC RPR + WQVPWGKH P S R ++ K Q +PVVLIKDP +W+ S CR++Y +FW + E HCP+L ++ AE +K + ++ +ESL+ +WN+WY +W + FP L RFEDLLF E+ V+ C C GGV D ++ +ED++KP H G G A+ +YG KR+ GFT+++M + + + +++ + Y P S Sbjct: 268 VVSMYGPSPIIHGLETCIPYRQMVKPEDRMIGPAGMFNTGTNLLFELMKVNCDIKEARRRPRREPRQNGMRWQVPWGKHNPPSTHRFKNVAKAWGKGIKQDDFMPVVLIKDPYSWMGSQCRHKY-TTFWGHD----EQHCPNLIRWRVTDHDEPAEVLVKFALEMKR-----YESLLDMWNQWYMEWEEQTFPALHTRFEDLLFHGEEVVKTACECVGGVFTDNFEYVEDSAKPNSFGIHKGSNGLVKAMLQYGDPSKRLTGFTERDMKYASKAMNVELMEHYGYVPPPS 547 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_98.16.1 >prot_C-australica_Contig_98.16.1 ID=prot_C-australica_Contig_98.16.1|Name=mRNA_C-australica_Contig_98.16.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=267bp MYGRTTATAGLETCQRFRDSAPLNQYIGPAGLYNTGTNLLYELLLRNCHGback to top mRNA from alignment at C-australica_Contig_98:55690..57952+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_98.16.1 ID=mRNA_C-australica_Contig_98.16.1|Name=mRNA_C-australica_Contig_98.16.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2263bp|location=Sequence derived from alignment at C-australica_Contig_98:55690..57952+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_98:55690..57952+ >mRNA_C-australica_Contig_98.16.1 ID=mRNA_C-australica_Contig_98.16.1|Name=mRNA_C-australica_Contig_98.16.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=801bp|location=Sequence derived from alignment at C-australica_Contig_98:55690..57952+ (Chrysoparadoxa australica CS_1217)back to top |