mRNA_C-australica_Contig_9791.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9791.1.1
Unique NamemRNA_C-australica_Contig_9791.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A222E1X0_9RHOB (Glutathione-dependent formaldehyde-activating enzyme n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E1X0_9RHOB)

HSP 1 Score: 167 bits (422), Expect = 1.300e-51
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAARG 234
            H+ACPYCMTWMFTRI+AYDDFV VRPTMFDDTTWFKPFIETM REKLPWVHVPVEHSYEAWPPMDQFETLVA YA RG
Sbjct:   74 HMACPYCMTWMFTRITAYDDFVNVRPTMFDDTTWFKPFIETMTREKLPWVHVPVEHSYEAWPPMDQFETLVAAYATRG 151          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A239CF07_9RHOB (Uncharacterized conserved protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239CF07_9RHOB)

HSP 1 Score: 147 bits (371), Expect = 7.550e-44
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAARG 234
            H+ACPYCMTWMFTR++ +D FV VRPTMFDD  WF PFIETM   KLPWVHVP +HSY+AWPPMDQFETL+A+YAARG
Sbjct:   74 HMACPYCMTWMFTRVTGFDGFVNVRPTMFDDMAWFAPFIETMTSAKLPWVHVPAQHSYDAWPPMDQFETLMADYAARG 151          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A0B3S8T7_9RHOB (Aldehyde-activating protein n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3S8T7_9RHOB)

HSP 1 Score: 124 bits (312), Expect = 7.070e-35
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAARG 234
            H+ACP+CM+W+FTRI+  D FV VRPTMFDDT+WF PFIETM   +LPW   P  HSY  WPPMD+FE L+A Y A+G
Sbjct:   74 HMACPHCMSWIFTRITGIDTFVNVRPTMFDDTSWFSPFIETMTSARLPWATTPARHSYVEWPPMDRFEELIAEYHAQG 151          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A238KAY3_9RHOB (Glutathione-dependent formaldehyde-activating enzyme n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KAY3_9RHOB)

HSP 1 Score: 124 bits (311), Expect = 1.000e-34
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAARG 234
            H+ACPYCMTWMFTRI+  DDF+ VRPTMFDDT WF PF+ETM   +L WV  P  HS+E WPP++ +  L+A YAA+G
Sbjct:   74 HMACPYCMTWMFTRITGIDDFLNVRPTMFDDTAWFVPFVETMTSARLHWVTTPARHSFETWPPVEDYAALMAEYAAQG 151          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: UPI001C97E80F (GFA family protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C97E80F)

HSP 1 Score: 122 bits (306), Expect = 5.760e-34
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAAR 231
            H+ACP+CM+WMFTRI+  D F+ VRPTMFD+T+WF P+IETM   KLPWV  P  HSY  WPPMD+FE L+A Y A+
Sbjct:   74 HMACPHCMSWMFTRITGVDAFLNVRPTMFDETSWFVPYIETMTSAKLPWVTTPARHSYSEWPPMDRFEVLMAEYMAQ 150          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A7X3LU83_9HYPH (Aldehyde-activating protein n=1 Tax=Stappia sp. GBMRC 2046 TaxID=2692190 RepID=A0A7X3LU83_9HYPH)

HSP 1 Score: 114 bits (286), Expect = 6.100e-31
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAAR 231
            H  CP CM+WMFTRI+  DDFV VRPTMFD+  W +PFIETM  EKLPWV  P  HSY+A+PPM+ F+ L+  +A R
Sbjct:   74 HFFCPSCMSWMFTRITGIDDFVNVRPTMFDEPEWTRPFIETMTAEKLPWVETPARHSYKAFPPMEDFQRLMREFAER 150          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A7W5Q2H8_9HYPH (CENP-V/GFA domain-containing protein n=4 Tax=Rhizobium TaxID=379 RepID=A0A7W5Q2H8_9HYPH)

HSP 1 Score: 111 bits (277), Expect = 1.500e-29
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAAR 231
            H  CPYCMTWMFTR+  +D FV +RPTM DD  WF PF+ET   EKLPWV  P  HSY A P MD++E L+  Y AR
Sbjct:   74 HYFCPYCMTWMFTRLEGFDWFVNLRPTMLDDPRWFTPFVETWTNEKLPWVTTPAVHSYAALPAMDEYEGLIKEYMAR 150          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: UPI0015600DA1 (GFA family protein n=1 Tax=Hongsoonwoonella zoysiae TaxID=2821844 RepID=UPI0015600DA1)

HSP 1 Score: 110 bits (276), Expect = 1.950e-29
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYA 225
            H  CP CM+W+FTR+   DDFV VRPTMFD   W +PFIETM  EKLPWV  P  HSYEA+PPM+ F+ L+  +A
Sbjct:   74 HFFCPSCMSWIFTRVMGMDDFVNVRPTMFDKPEWTRPFIETMTAEKLPWVETPARHSYEAFPPMEDFQKLMREFA 148          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A1H7BUF7_9RHOB (Uncharacterized conserved protein n=1 Tax=Cribrihabitans marinus TaxID=1227549 RepID=A0A1H7BUF7_9RHOB)

HSP 1 Score: 110 bits (276), Expect = 2.060e-29
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAAR 231
            H  CP CM+WMFTRI + D  V VRPTMFDD  W  PFIETM R+KLPWV VP  HS+E +P MD+F+ L A +A +
Sbjct:   74 HYHCPDCMSWMFTRIESVDAIVNVRPTMFDDAAWVTPFIETMTRDKLPWVQVPARHSFEEFPSMDEFQALAAEFAGQ 150          
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Match: A0A366EBZ4_9HYPH (CENP-V/GFA domain-containing protein n=2 Tax=Pseudochrobactrum asaccharolyticum TaxID=354351 RepID=A0A366EBZ4_9HYPH)

HSP 1 Score: 110 bits (276), Expect = 2.060e-29
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 HLACPYCMTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHSYEAWPPMDQFETLVANYAA 228
            H  C YCMTWMFT I   D FV VRP++FD+  WF PFIETM +EKLPW H P  HSYE +PP + FE L+  +AA
Sbjct:   74 HYFCAYCMTWMFTLIDGVDAFVNVRPSLFDERKWFVPFIETMTKEKLPWAHTPATHSYEGFPPFEDFEKLMTEFAA 149          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E1X0_9RHOB1.300e-5192.31Glutathione-dependent formaldehyde-activating enzy... [more]
A0A239CF07_9RHOB7.550e-4476.92Uncharacterized conserved protein n=1 Tax=Antarcto... [more]
A0A0B3S8T7_9RHOB7.070e-3564.10Aldehyde-activating protein n=6 Tax=Roseobacterace... [more]
A0A238KAY3_9RHOB1.000e-3462.82Glutathione-dependent formaldehyde-activating enzy... [more]
UPI001C97E80F5.760e-3463.64GFA family protein n=2 Tax=Rhodobacterales TaxID=2... [more]
A0A7X3LU83_9HYPH6.100e-3161.04Aldehyde-activating protein n=1 Tax=Stappia sp. GB... [more]
A0A7W5Q2H8_9HYPH1.500e-2959.74CENP-V/GFA domain-containing protein n=4 Tax=Rhizo... [more]
UPI0015600DA11.950e-2960.00GFA family protein n=1 Tax=Hongsoonwoonella zoysia... [more]
A0A1H7BUF7_9RHOB2.060e-2959.74Uncharacterized conserved protein n=1 Tax=Cribriha... [more]
A0A366EBZ4_9HYPH2.060e-2959.21CENP-V/GFA domain-containing protein n=2 Tax=Pseud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9791contigC-australica_Contig_9791:621..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1410620.SHLA_26c001030
PFAMsGFA
Model size237
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-24
EggNOG OGsCOG3791@1|root,COG3791@2|Bacteria,1RH3R@1224|Proteobacteria,2U96R@28211|Alphaproteobacteria,4BDZV@82115|Rhizobiaceae
DescriptionGlutathione-dependent formaldehyde-activating
Cds size216
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.2955697-CDS-C-australica_Contig_9791:620..8361682588845.2955697-CDS-C-australica_Contig_9791:620..836Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9791 621..836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.3090162-UTR-C-australica_Contig_9791:836..8571682588845.3090162-UTR-C-australica_Contig_9791:836..857Chrysoparadoxa australica CS_1217UTRC-australica_Contig_9791 837..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9791.1.1prot_C-australica_Contig_9791.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9791 621..836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9791.1.1

>prot_C-australica_Contig_9791.1.1 ID=prot_C-australica_Contig_9791.1.1|Name=mRNA_C-australica_Contig_9791.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=72bp
MTWMFTRISAYDDFVTVRPTMFDDTTWFKPFIETMNREKLPWVHVPVEHS
YEAWPPMDQFETLVANYAARG*
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mRNA from alignment at C-australica_Contig_9791:621..857-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9791.1.1 ID=mRNA_C-australica_Contig_9791.1.1|Name=mRNA_C-australica_Contig_9791.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=237bp|location=Sequence derived from alignment at C-australica_Contig_9791:621..857- (Chrysoparadoxa australica CS_1217)
CACCTGGCTTGCCCCTACTGCATGACGTGGATGTTCACCCGCATTTCCGC CTATGATGACTTCGTAACCGTGCGCCCGACGATGTTTGATGACACGACGT GGTTTAAGCCCTTCATCGAAACGATGAACCGCGAGAAACTGCCCTGGGTC CACGTCCCGGTTGAGCACAGCTATGAGGCATGGCCGCCGATGGATCAGTT CGAAACCCTAGTGGCGAACTACGCCGCACGCGGCTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_9791:621..857-

>mRNA_C-australica_Contig_9791.1.1 ID=mRNA_C-australica_Contig_9791.1.1|Name=mRNA_C-australica_Contig_9791.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=216bp|location=Sequence derived from alignment at C-australica_Contig_9791:621..857- (Chrysoparadoxa australica CS_1217)
ATGACGTGGATGTTCACCCGCATTTCCGCCTATGATGACTTCGTAACCGT
GCGCCCGACGATGTTTGATGACACGACGTGGTTTAAGCCCTTCATCGAAA
CGATGAACCGCGAGAAACTGCCCTGGGTCCACGTCCCGGTTGAGCACAGC
TATGAGGCATGGCCGCCGATGGATCAGTTCGAAACCCTAGTGGCGAACTA
CGCCGCACGCGGCTAA
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