mRNA_C-australica_Contig_978.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_978.5.1
Unique NamemRNA_C-australica_Contig_978.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_978.5.1 vs. uniprot
Match: A0A7S3Y223_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y223_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.110e-8
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  304 VLVHGLKGQPEDLNYLKIALDNLGCTG---MYVHLAQANVGSTTDGVEQGGHRLANEIRGLKRHLP 492
            VLVHGL G PEDLNYLK AL+         + VHLA+ N   T DGV  GG RLA E+R +    P
Sbjct:   48 VLVHGLAGTPEDLNYLKGALERGAAARGQRVLVHLARCNHRRTRDGVRAGGRRLAQEVRAVVARHP 113
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BLAST of mRNA_C-australica_Contig_978.5.1 vs. uniprot
Match: A0A7S4DB30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB30_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 3.620e-8
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  304 VLVHGLKGQPEDLNYLKIALDNLGCTG---MYVHLAQANVGSTTDGVEQGGHRLANEIRGLKRHLP 492
            VLVHGL G PEDLNYLK AL+         + VHLA+ N   T DGV  GG RLA E+R +    P
Sbjct:  128 VLVHGLAGTPEDLNYLKGALERGAAARGQRVLVHLARCNHRRTRDGVRAGGRRLAQEVRAVVARHP 193
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BLAST of mRNA_C-australica_Contig_978.5.1 vs. uniprot
Match: A0A7S1TBP4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBP4_9RHOD)

HSP 1 Score: 59.3 bits (142), Expect = 2.730e-7
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:  304 VLVHGLKGQPEDLNYLKIALDN---LGCTGMYVHLAQANVGSTTDGVEQGGHRLANEIRGLKRHLP 492
            VLVHGL G+PED+  ++  +     +G  G+ +H    NVG TTDGV  GG R+A +I G+ R  P
Sbjct:  122 VLVHGLSGKPEDMGKIEELMRKDAAVGQRGVLIHATDVNVGRTTDGVRNGGKRVAGDIVGMVRKYP 187
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_978.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3Y223_HETAK1.110e-851.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DB30_HETAK3.620e-851.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TBP4_9RHOD2.730e-743.94Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_978contigC-australica_Contig_978:9226..10001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G287
PFAMsDUF676
Model size493
Max annot lvl2759|Eukaryota
KEGG koko:K02737
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.78e-11
EggNOG OGsKOG4372@1|root,KOG4372@2759|Eukaryota
EC3.4.25.1
Descriptionacylglycerol lipase activity
Cds size210
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588844.1077006-CDS-C-australica_Contig_978:9225..92651682588844.1077006-CDS-C-australica_Contig_978:9225..9265Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 9226..9265 -
1682588844.1188896-CDS-C-australica_Contig_978:9364..94911682588844.1188896-CDS-C-australica_Contig_978:9364..9491Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 9365..9491 -
1682588844.1285906-CDS-C-australica_Contig_978:9603..96461682588844.1285906-CDS-C-australica_Contig_978:9603..9646Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 9604..9646 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588844.1390889-UTR-C-australica_Contig_978:9646..98281682588844.1390889-UTR-C-australica_Contig_978:9646..9828Chrysoparadoxa australica CS_1217UTRC-australica_Contig_978 9647..9828 -
1682588844.1487997-UTR-C-australica_Contig_978:9901..100011682588844.1487997-UTR-C-australica_Contig_978:9901..10001Chrysoparadoxa australica CS_1217UTRC-australica_Contig_978 9902..10001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_978.5.1prot_C-australica_Contig_978.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_978 9226..9646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_978.5.1

>prot_C-australica_Contig_978.5.1 ID=prot_C-australica_Contig_978.5.1|Name=mRNA_C-australica_Contig_978.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=70bp
MLSCPVQVLVHGLKGQPEDLNYLKIALDNLGCTGMYVHLAQANVGSTTDG
VEQGGHRLANEIRGLKRHLP
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mRNA from alignment at C-australica_Contig_978:9226..10001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_978.5.1 ID=mRNA_C-australica_Contig_978.5.1|Name=mRNA_C-australica_Contig_978.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=776bp|location=Sequence derived from alignment at C-australica_Contig_978:9226..10001- (Chrysoparadoxa australica CS_1217)
GGGCTCAGGGCTTCAGGACACTGCTATTGCCCCCATTTTATGCATCTTTC
GCGCTTACTTAGCCCAAAGAGCTTCTTCTGGGGTTACCTGGCTTTGCGAG
GTTGTACCTGTCACAGACTTGTCCCACCCAGCTGCGTTGGAGGCACCTGA
ATCCTTCTTCTCCTCTCTCTCAGGGGGGATTCGGCTTATGGGAACCACAC
AGAGCAGCAATGCCTGCCTTGCTCAGCCCCGTGGAGCTGCTTTAGATAGC
CCAGATGCCAAGGCATCCCACCTCCTGGTGCTGTGGCCCTGCCCCTCCTA
AGCTGCAACCTCACAGAATTCTAGCGCTAACACTGTTCCCTTACGCTGTT
CCCTCATGCTTTCCTGCCCTGTACAGGTTCTGGTGCACGGGCTCAAAGGT
TGGTTATGTTCATCCTGTCTTCCCAGCCCTGCTGGCCCTGGGATCCTATA
CCCAGACGTGATACTCACCCTCAGCCTGACCCTGCTGCTGAAATCAACAA
CCTGACACAGGCCAGCCGGAAGACCTCAACTACTTAAAGATTGCGCTGGA
TAACTTGGGGTGCACGGGGATGTACGTGCACCTAGCCCAAGCCAATGTCG
GCAGCACCACTGACGGGGTAGAGCAGGGTGGCCACAGGTGCAGCTTACTC
AGTACTCAGTCATCCTACTCAGCACTCAGTTGTCCTCTCTCACACCTCGC
GTCTGACTGTACGCATGGCGCACTCTCCACAAGCAGGCTTGCTAATGAGA
TCAGGGGCCTCAAAAGACATTTGCCT
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Coding sequence (CDS) from alignment at C-australica_Contig_978:9226..10001-

>mRNA_C-australica_Contig_978.5.1 ID=mRNA_C-australica_Contig_978.5.1|Name=mRNA_C-australica_Contig_978.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=210bp|location=Sequence derived from alignment at C-australica_Contig_978:9226..10001- (Chrysoparadoxa australica CS_1217)
ATGCTTTCCTGCCCTGTACAGGTTCTGGTGCACGGGCTCAAAGGCCAGCC
GGAAGACCTCAACTACTTAAAGATTGCGCTGGATAACTTGGGGTGCACGG
GGATGTACGTGCACCTAGCCCAAGCCAATGTCGGCAGCACCACTGACGGG
GTAGAGCAGGGTGGCCACAGGCTTGCTAATGAGATCAGGGGCCTCAAAAG
ACATTTGCCT
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