mRNA_C-australica_Contig_978.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_978.1.1
Unique NamemRNA_C-australica_Contig_978.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: A0A1I4AMS3_9ACTN (Spore coat protein A n=2 Tax=Streptomyces TaxID=1883 RepID=A0A1I4AMS3_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 7.170e-10
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERKAFKKIRGNCALVSTGCGGCELEIVLQ 196
            N+QEA   W HDH LG+TR+NVYAGLA  +++RD HE    +  R         CG  ELE+V+Q
Sbjct:  211 NSQEAATLWYHDHTLGITRLNVYAGLAGFYLLRDSHELSLIEDHR-------LPCGPYELELVVQ 268
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: A0A7C1IFH9_9BACE (Spore coat protein CotA (Fragment) n=1 Tax=Bacteroides sp. TaxID=29523 RepID=A0A7C1IFH9_9BACE)

HSP 1 Score: 62.0 bits (149), Expect = 1.250e-9
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERKAFKKIRGNCALVSTGCGGCELEIVLQ 196
            NNQEA   W HDH LG+TR+NVYAGLA  + + D+HER   K    N AL     G  ++EIV+Q
Sbjct:  194 NNQEAATLWYHDHALGITRLNVYAGLAGFYRLEDKHERDLVK----NAALPK---GSHDIEIVIQ 251
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: A0A1M4ZKY4_9THEO (Multicopper oxidase n=1 Tax=Caldanaerobius fijiensis DSM 17918 TaxID=1121256 RepID=A0A1M4ZKY4_9THEO)

HSP 1 Score: 61.6 bits (148), Expect = 1.690e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHER 115
            NNQEA M W HDH LG+TR+NVYAGLA  + IRD+HER
Sbjct:  109 NNQEAAMLWYHDHALGITRLNVYAGLAGLYYIRDKHER 146
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: A0A7C2LVQ1_9BACE (T9SS type A sorting domain-containing protein n=1 Tax=Bacteroides sp. TaxID=29523 RepID=A0A7C2LVQ1_9BACE)

HSP 1 Score: 60.5 bits (145), Expect = 4.710e-9
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERKAFKKIRGNCALVSTGCGGCELEIVLQ 196
            NNQEA   W HDH LG+TR+NVYAGLA  + + D+HER   K    N  L     G  ++EIV+Q
Sbjct:  194 NNQEAATLWYHDHALGITRLNVYAGLAGFYRLEDKHERDLVK----NAVLPK---GSHDIEIVIQ 251
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: UPI0011099CEA (multicopper oxidase n=1 Tax=Aquibacillus sediminis TaxID=2574734 RepID=UPI0011099CEA)

HSP 1 Score: 59.7 bits (143), Expect = 8.700e-9
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHER 115
            NNQ A M W HDH +GLTR+N YAGLA  +IIRD+HER
Sbjct:  141 NNQRAAMLWYHDHAMGLTRLNNYAGLAGAYIIRDQHER 178
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: UPI001C662BD7 (multicopper oxidase domain-containing protein n=1 Tax=Kitasatospora acidiphila TaxID=2567942 RepID=UPI001C662BD7)

HSP 1 Score: 58.5 bits (140), Expect = 2.220e-8
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERKAFKKIRGNCALVSTGCGGCELEIVLQ 196
            N+QEA   W HDH +GLTR+NVYAGLA  +++RDE+E +  K       L+ TG    E EIVLQ
Sbjct:  202 NSQEAATLWYHDHAIGLTRLNVYAGLAGFYLLRDENEDELVKD-----HLLPTGPH--EREIVLQ 259
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: UPI00041A3834 (multicopper oxidase domain-containing protein n=1 Tax=Gulosibacter molinativorax TaxID=256821 RepID=UPI00041A3834)

HSP 1 Score: 58.5 bits (140), Expect = 2.240e-8
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:    8 QEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERK 118
            Q A M W HDH++G+TR NVYAGLA  WIIRDE ER+
Sbjct:  158 QRASMLWYHDHVMGVTRFNVYAGLAGLWIIRDERERE 194
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: UPI00126541AB (multicopper oxidase n=1 Tax=Marinobacter changyiensis TaxID=2604091 RepID=UPI00126541AB)

HSP 1 Score: 58.5 bits (140), Expect = 2.240e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHE 112
            N+QEAG  W HDH LG+TR+NVYAGLA  +IIRDE++
Sbjct:  204 NSQEAGTIWYHDHALGITRLNVYAGLAGFYIIRDEYD 240
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: UPI000A8F9195 (multicopper oxidase n=2 Tax=Bacillus TaxID=1386 RepID=UPI000A8F9195)

HSP 1 Score: 57.8 bits (138), Expect = 4.150e-8
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERKAFKKIRGNCALVSTGCGGCELEIVLQ 196
            NN +A   W HDH LG+TR+N+YAGLA  ++IRD  ER           L++  CG  E+ +++Q
Sbjct:  141 NNMQACTLWYHDHTLGITRLNIYAGLAGFYLIRDHRER-----------LLNLPCGQYEIPLIIQ 194
[Close]
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Match: UPI001D5A6D0C (multicopper oxidase n=1 Tax=Peribacillus sp. Bi96 TaxID=2884273 RepID=UPI001D5A6D0C)

HSP 1 Score: 57.8 bits (138), Expect = 4.150e-8
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 2 
Query:    2 NNQEAGMTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERKAFKKIRGNCALVSTGCGGCELEIVLQ 196
            NNQ++   W HDH LG+TR+NVYAGLA  ++IRD+ ER           +++  CG  E+ +++Q
Sbjct:  141 NNQKSVTQWYHDHTLGITRLNVYAGLAGFYLIRDKKER-----------VLNLPCGDYEIPLIIQ 194
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I4AMS3_9ACTN7.170e-1047.69Spore coat protein A n=2 Tax=Streptomyces TaxID=18... [more]
A0A7C1IFH9_9BACE1.250e-950.77Spore coat protein CotA (Fragment) n=1 Tax=Bactero... [more]
A0A1M4ZKY4_9THEO1.690e-971.05Multicopper oxidase n=1 Tax=Caldanaerobius fijiens... [more]
A0A7C2LVQ1_9BACE4.710e-949.23T9SS type A sorting domain-containing protein n=1 ... [more]
UPI0011099CEA8.700e-968.42multicopper oxidase n=1 Tax=Aquibacillus sediminis... [more]
UPI001C662BD72.220e-850.77multicopper oxidase domain-containing protein n=1 ... [more]
UPI00041A38342.240e-867.57multicopper oxidase domain-containing protein n=1 ... [more]
UPI00126541AB2.240e-867.57multicopper oxidase n=1 Tax=Marinobacter changyien... [more]
UPI000A8F91954.150e-841.54multicopper oxidase n=2 Tax=Bacillus TaxID=1386 Re... [more]
UPI001D5A6D0C4.150e-841.54multicopper oxidase n=1 Tax=Peribacillus sp. Bi96 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_978contigC-australica_Contig_978:2381..3183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121934.AUDX01000005_gene156
PFAMsCu-oxidase,Cu-oxidase_2,Cu-oxidase_3
Model size205
Max annot lvl201174|Actinobacteria
KEGG rclassRC00767,RC02319
KEGG koko:K20219
KEGG ReactionR00074
KEGG Pathwayko00380,map00380
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.78e-08
EggNOG OGsCOG2132@1|root,COG2132@2|Bacteria,2GMJ4@201174|Actinobacteria,4FMWW@85023|Microbacteriaceae
EC1.10.3.4
DescriptionMulticopper oxidase
Cds size186
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_978.1.1prot_C-australica_Contig_978.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_978 2400..3183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588843.6938794-UTR-C-australica_Contig_978:2380..23991682588843.6938794-UTR-C-australica_Contig_978:2380..2399Chrysoparadoxa australica CS_1217UTRC-australica_Contig_978 2381..2399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588843.7094367-CDS-C-australica_Contig_978:2399..24221682588843.7094367-CDS-C-australica_Contig_978:2399..2422Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 2400..2422 +
1682588843.7221794-CDS-C-australica_Contig_978:2620..26491682588843.7221794-CDS-C-australica_Contig_978:2620..2649Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 2621..2649 +
1682588843.73102-CDS-C-australica_Contig_978:2767..28141682588843.73102-CDS-C-australica_Contig_978:2767..2814Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 2768..2814 +
1682588843.7397356-CDS-C-australica_Contig_978:2972..30211682588843.7397356-CDS-C-australica_Contig_978:2972..3021Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 2973..3021 +
1682588843.7517238-CDS-C-australica_Contig_978:3145..31831682588843.7517238-CDS-C-australica_Contig_978:3145..3183Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 3146..3183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_978.1.1

>prot_C-australica_Contig_978.1.1 ID=prot_C-australica_Contig_978.1.1|Name=mRNA_C-australica_Contig_978.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=62bp
MTWVHDHLLGLTRMNVYAGLAHHWIIRDEHERKAFKKIRGNCALVSTGCG
GCELEIVLQVC*
back to top

mRNA from alignment at C-australica_Contig_978:2381..3183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_978.1.1 ID=mRNA_C-australica_Contig_978.1.1|Name=mRNA_C-australica_Contig_978.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=803bp|location=Sequence derived from alignment at C-australica_Contig_978:2381..3183+ (Chrysoparadoxa australica CS_1217)
GAATAACCAGGAGGCAGGCATGACTTGGGTCCACGACCACTTGTAAGTTA
TGTGCTAGTCTAGCTGTAGCAATGTATCTAACCTTGCCCACACTAAGCTA
TGGAGTGGAATTCTTTCCAGGTTGCATCATCCTCTCCCGCAACTCTGTGG
GCAGCCTCCTTTAATTTAAACATTGCTGTAAGGTTCACTCTTGATAAAAA
TAGCTGACGAGCTCTCATGCCTTTGCCACTCTAAACACAGACTTGGTCTG
ACCCGAATGAATGTCTACGGTAAGCAAAGCCTATGCCAAGCTTCAAAGCC
AGGATGTTCGCTGTGGCCTGTTTGACCTCTAGCCTGGTCACTCTTCAGTA
GTACTAGCACCTAACTAACAGCCCTACCGATGCTCAGCTGGGCTGGCCCA
CCACTGGATTATTAGGGATGAACATGAGAGGAAGGTCCGTGAGTGAGTTA
TTGAGGGATGCAGTGAGTTATTGGGCCTGCCTTACAGTGTAAGAGTGAGA
AAGAGAGGTGTCTGTGTGAGAGAATCATCAGTCTTAACCTTGCCATTCGC
CAACCTGATGACCTAAAGTCTCTCTCTCTCTCTCTCATGCAGGCCTTTAA
GAAGATTCGTGGCAATTGTGCCCTTGTCTCCACTGGATGCGGTGAGGCTA
AGCCTTGTTATCCTATCCTGATATGGTGCATCACAAAGCGTGCTGCCATG
CATCAGCTGTAGCAGCGCCTCTTACTACCCCTGCACCACACCGTCCTGGC
ATGAACGCTCATCAGGTGGTTGCGAGTTGGAGATCGTCTTGCAGGTGTGC
TGA
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_978:2381..3183+

>mRNA_C-australica_Contig_978.1.1 ID=mRNA_C-australica_Contig_978.1.1|Name=mRNA_C-australica_Contig_978.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=186bp|location=Sequence derived from alignment at C-australica_Contig_978:2381..3183+ (Chrysoparadoxa australica CS_1217)
ATGACTTGGGTCCACGACCACTTACTTGGTCTGACCCGAATGAATGTCTA
CGCTGGGCTGGCCCACCACTGGATTATTAGGGATGAACATGAGAGGAAGG
CCTTTAAGAAGATTCGTGGCAATTGTGCCCTTGTCTCCACTGGATGCGGT
GGTTGCGAGTTGGAGATCGTCTTGCAGGTGTGCTGA
back to top