mRNA_C-australica_Contig_977.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_977.5.1
Unique NamemRNA_C-australica_Contig_977.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_977.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_977contigC-australica_Contig_977:9872..11455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size855
Hectar predicted targeting categorysignal peptide
Exons4
Cds size855
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.9215155-CDS-C-australica_Contig_977:9871..101531682588842.9215155-CDS-C-australica_Contig_977:9871..10153Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 9872..10153 -
1682588842.9315524-CDS-C-australica_Contig_977:10338..103881682588842.9315524-CDS-C-australica_Contig_977:10338..10388Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 10339..10388 -
1682588842.941449-CDS-C-australica_Contig_977:10818..109111682588842.941449-CDS-C-australica_Contig_977:10818..10911Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 10819..10911 -
1682588842.9560642-CDS-C-australica_Contig_977:11025..114551682588842.9560642-CDS-C-australica_Contig_977:11025..11455Chrysoparadoxa australica CS_1217CDSC-australica_Contig_977 11026..11455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_977.5.1prot_C-australica_Contig_977.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_977 9872..11455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_977.5.1

>prot_C-australica_Contig_977.5.1 ID=prot_C-australica_Contig_977.5.1|Name=mRNA_C-australica_Contig_977.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=285bp
MYTVRTYVLSCTYLLPLAVKATHLLYAAVSSLLLHGSWAPSLAMDRSLFK
AAANQRARAGSSTKPKYRGKSKAELLALLKAKQAAQEQEKAAPVSPSGSS
KPVQPAQPAQPTQAASLPVGFFDQDENGGIQAESSPATQQMQQAWQEQGL
EQEGGTISAEGTLPADFFDAPTKSAPQAPKEKRKKLTPEQQADWGEFQTF
AAKVNKDEAEEEVGDEAIEMDTKLQVSCLLSIRLNKGVCSAFGTFAPHAI
YCVVSPTSSCHVLLECLFQEEREQLEQLTYMGRFA
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mRNA from alignment at C-australica_Contig_977:9872..11455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_977.5.1 ID=mRNA_C-australica_Contig_977.5.1|Name=mRNA_C-australica_Contig_977.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1584bp|location=Sequence derived from alignment at C-australica_Contig_977:9872..11455- (Chrysoparadoxa australica CS_1217)
ATGTATACTGTACGTACATATGTACTCTCCTGTACGTACCTCCTACCCTT
AGCGGTTAAGGCCACGCACCTCCTTTACGCTGCTGTGTCGTCTTTGCTCT
TGCATGGCTCTTGGGCTCCCTCCCTAGCCATGGACAGGTCACTATTCAAG
GCCGCAGCAAACCAGAGGGCACGGGCAGGGAGCAGCACCAAACCCAAGTA
CAGGGGAAAGAGTAAGGCTGAATTGCTGGCACTGCTAAAGGCCAAGCAGG
CAGCTCAAGAGCAAGAAAAGGCAGCCCCAGTATCCCCATCTGGAAGCTCC
AAACCTGTGCAGCCTGCGCAACCTGCGCAACCAACACAAGCGGCCTCGCT
TCCTGTGGGATTCTTTGATCAGGACGAGAATGGGGGCATTCAGGCGGAAA
GCAGCCCTGCAACACAGCAGATGCAGCAAGGTGGTGATGCATGGATGGCA
TCTTTGCCCACATTGTTTTGCCTCCGTAGCACCCTGCTGCCGTTCCAAGT
CAAGTCAAGCTGCTCACTCATATTTTTTCCTGTCTTCATTGCAGCATGGC
AGGAGCAAGGGCTTGAGCAGGAAGGTGGTACAATCAGTGCAGAGGGCACC
CTTCCTGCTGACTTCTTCGACGCGCCCACAAAATCAGGTCTCCCCCTATT
CTCTCATTCATCATTTCTTTTTTGTTTCCTCACACTGGAAGAACACCCGT
ACCATGGACCCTCCTATCTATCATTAACCCAGAATCATCACTCCTGTTCA
CCGACCAACTGCTGAATTCCCTGCAATTTGCCTTTTCCTATAACCTCTTG
CTTACCACTAGGATCACCACCCTTTGTTGCTCACTCACTACCCACTGCTG
GATACGTTGAAAACCATGCCTTACCGAAGTGATTCATTCTCTGAGACTTA
GCAGCAGCAGTAAGACCTTGAATTGAACACTGTTTAATCTTTCCTCTTTC
TTTCTTTCCCATCTCCTGATGGCCCATTTACTCTTTAACAACCTATCTCA
CTGAGCATCTCAAACACACACCAACTGTGCCATAACTTGACTCCACTGCA
CACCTTGCTTGGCTTAGCCCCTCAGGCTCCCAAGGAGAAGCGAAAGAAGC
TTACTCCTGAGCAGCAGGTCATCTTTTGCGCCTTGTGCTTGTTTTTTTTT
TTTTGTGCGGAACAGATCCTCAATAGCAATTGCCTTGGCTAGATTGCAGT
GCGACTCCCCTCATGAGGCTCGATGAAGCTCATCACTCCTTTATGGCTCT
TGGCAAGCCATAGTTGATTCATATCTCACGCCTTCCACCTCAATTTGTAT
AGGCTGATTGGGGGGAGTTTCAAACATTTGCTGCCAAAGTTAATAAGGAC
GAAGCTGAAGAGGAAGTGGGGGACGAGGCAATAGAGATGGACACCAAGCT
GCAAGTTAGTTGTCTCTTAAGTATCAGATTGAACAAGGGGGTTTGCTCTG
CTTTTGGGACATTTGCCCCACATGCCATATATTGCGTGGTGAGCCCCACA
AGCTCATGCCACGTTCTCCTTGAATGCTTGTTTCAGGAGGAGCGAGAGCA
GTTGGAGCAGCTTACGTACATGGGCCGCTTTGCA
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Coding sequence (CDS) from alignment at C-australica_Contig_977:9872..11455-

>mRNA_C-australica_Contig_977.5.1 ID=mRNA_C-australica_Contig_977.5.1|Name=mRNA_C-australica_Contig_977.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=855bp|location=Sequence derived from alignment at C-australica_Contig_977:9872..11455- (Chrysoparadoxa australica CS_1217)
ATGTATACTGTACGTACATATGTACTCTCCTGTACGTACCTCCTACCCTT
AGCGGTTAAGGCCACGCACCTCCTTTACGCTGCTGTGTCGTCTTTGCTCT
TGCATGGCTCTTGGGCTCCCTCCCTAGCCATGGACAGGTCACTATTCAAG
GCCGCAGCAAACCAGAGGGCACGGGCAGGGAGCAGCACCAAACCCAAGTA
CAGGGGAAAGAGTAAGGCTGAATTGCTGGCACTGCTAAAGGCCAAGCAGG
CAGCTCAAGAGCAAGAAAAGGCAGCCCCAGTATCCCCATCTGGAAGCTCC
AAACCTGTGCAGCCTGCGCAACCTGCGCAACCAACACAAGCGGCCTCGCT
TCCTGTGGGATTCTTTGATCAGGACGAGAATGGGGGCATTCAGGCGGAAA
GCAGCCCTGCAACACAGCAGATGCAGCAAGCATGGCAGGAGCAAGGGCTT
GAGCAGGAAGGTGGTACAATCAGTGCAGAGGGCACCCTTCCTGCTGACTT
CTTCGACGCGCCCACAAAATCAGCCCCTCAGGCTCCCAAGGAGAAGCGAA
AGAAGCTTACTCCTGAGCAGCAGGCTGATTGGGGGGAGTTTCAAACATTT
GCTGCCAAAGTTAATAAGGACGAAGCTGAAGAGGAAGTGGGGGACGAGGC
AATAGAGATGGACACCAAGCTGCAAGTTAGTTGTCTCTTAAGTATCAGAT
TGAACAAGGGGGTTTGCTCTGCTTTTGGGACATTTGCCCCACATGCCATA
TATTGCGTGGTGAGCCCCACAAGCTCATGCCACGTTCTCCTTGAATGCTT
GTTTCAGGAGGAGCGAGAGCAGTTGGAGCAGCTTACGTACATGGGCCGCT
TTGCA
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