mRNA_C-australica_Contig_977.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A836CA23_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA23_9STRA) HSP 1 Score: 357 bits (915), Expect = 5.760e-119 Identity = 183/282 (64.89%), Postives = 213/282 (75.53%), Query Frame = 1 Query: 94 LAIHAQNAGVGKMIKPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRL-----------VKQHVRDGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNN----------------PEGEGEAWYELTKESLEMINLKPQSAEGLSLPKLLSQLPK 858 L I++ + G K++KP+RI+IVRHGESMGNLDE+ Y +PDW IPLTKQG+ DAR G+ +K+HV D P+F YTSPYLRTKQTLAGMVEAF +N I+GVREEPRLTEQQFGNFQN ERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDF+N IARDD+ V+IVTHGLTLRL+VMRWF+YSI +FE+T+NPPNGG VVMERR P+G EAWYELT ESL++INLKPQ G SL +LLS+LP+ Sbjct: 66 LGIYSADHGHRKLVKPERIIIVRHGESMGNLDESTYVHVPDWKIPLTKQGYRDARLAGQKXXXXXXXXXXKIKEHVGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIRDSKQERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFSNEQIARDDLNVVIVTHGLTLRLMVMRWFQYSIADFENTYNPPNGGHVVMERRGGECARLQRTSEAHRGKGPKGGSEAWYELTPESLDLINLKPQRQFG-SLWRLLSELPQ 346
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A6H5JRP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP2_9PHAE) HSP 1 Score: 336 bits (862), Expect = 7.510e-112 Identity = 172/274 (62.77%), Postives = 202/274 (73.72%), Query Frame = 1 Query: 73 PHADQNSLAIHAQNAGVGKMIKPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHVRDGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEGEGEA-------------WYELTKESLEMINLKPQSAEGLSLPKLLSQLP 855 PH+DQ SL + + + G +++KP+RI+IVRHGES+GN DE+ Y +PDW IPLTK+G + + G +K+++ D P+F YTSPYLRTKQTLAGMVEAF +N I+GVREEPRLTEQQFGNFQN ERARFGRFYYRFP+GESGLDVYNRATSFIATMFRDFAN IARDD+ VIIVTHGLTLRLLVMRWF+YSI +FE T NP NG FVVMER+ + + WYELT ES IN K Q G SL KLLS+LP Sbjct: 19 PHSDQESLGLFSGD-GKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQQQFG-SLWKLLSELP 290
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: D7FZ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ54_ECTSI) HSP 1 Score: 318 bits (816), Expect = 1.660e-104 Identity = 153/236 (64.83%), Postives = 186/236 (78.81%), Query Frame = 1 Query: 73 PHADQNSLAIHAQNAGVGKMIKPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHVRDGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEGEGEAWYELTKE 780 PH+DQ SL + + + G +++KP+RI+IVRHGES+GN DE+ Y +PDW IPLTK+G + + G +K+++ D P+F YTSPYLRTKQTLAGMVEAF +N I+GVREEPRLTEQQFGNFQN ERARFGRFYYRFP+GESGLDVYNRATSFIATMFRDFAN IARDD+ VIIVTHGLTLRLLVMRWF+YSI +FE T NP NG FVVMER+ + + + +++ E Sbjct: 97 PHSDQESLGLFSGD-GKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAE 331
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A7S1XZK9_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK9_9STRA) HSP 1 Score: 295 bits (755), Expect = 4.870e-94 Identity = 151/269 (56.13%), Postives = 189/269 (70.26%), Query Frame = 1 Query: 130 MIKPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHVRDGPVFFYTSPYLRTKQTLAG----------------------------MVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEGEGEAWYELTKESLEMINLKPQSAEGLSLPKLLSQL 852 +++P RI++VRHGES GN+D AY PDW IPLTK+G +DAR G+ +K+ V D P++ YTSPYLRTKQTLAG MV A+ +NEI+GVREEPRLTEQQFGNFQN +R RFGRFY+RFPEGESGLDVYNR TSFIAT+FRDF+N IAR+D+ VIIVTHGLTLRL +MR+F Y+I +FE+++NP NG FVVM+R+ PEG+ +WYEL E E +NL PQ+ G SL K+L ++ Sbjct: 79 IVRPARIILVRHGESAGNVDPQAYVNTPDWKIPLTKKGWKDARLAGQQIKEIVGDSPIYIYTSPYLRTKQTLAGKGSPQPRSLPLSLAPLPLSSTRPPAPPGMVGAWDTNEIVGVREEPRLTEQQFGNFQNVTNVKESREQRTRFGRFYFRFPEGESGLDVYNRVTSFIATLFRDFSNKDIAREDLDVIIVTHGLTLRLFLMRFFHYTIHDFENSYNPNNGAFVVMQRQEGPEGQ--SWYELMPEGREALNLPPQNGVG-SLWKILQEM 344
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A7S2SR22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR22_9STRA) HSP 1 Score: 273 bits (699), Expect = 1.600e-87 Identity = 131/246 (53.25%), Postives = 175/246 (71.14%), Query Frame = 1 Query: 130 MIKPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHVRDGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIARD-----DITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEGEGEAWYELTKESLEMINLKPQSAEGLSLPKLLSQL 852 +++P+RI +VRHGES+GN+ Y +PDW I LT++G E A+ TG + + + PVFFYTSPY RTK+TL MV F ++I+GVREEPRLTEQQFGNFQN ER+ +GRFYYRFP+GESG DVY R ++F+ ++RD AN + + D+ V+IV+HGLTLRLL+MRWF+Y+I +FE + NPPN FVVMERR + G WYELT+ESL+++N P +G SL KL+S+L Sbjct: 38 LVRPKRIFVVRHGESLGNISPEVYINVPDWRISLTEEGKEQAKATGSKISHIIGEDPVFFYTSPYRRTKETLQSMVTEFEQSDIVGVREEPRLTEQQFGNFQNLDEIQICKVERSSYGRFYYRFPQGESGFDVYTRVSTFLPDLYRDAANAELFGEGQTARDLNVVIVSHGLTLRLLLMRWFQYTISDFEQSHNPPNAAFVVMERREDQAHTGREWYELTEESLKLLNYSPPEHKG-SLWKLMSEL 282
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A4D9D0Z6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Z6_9STRA) HSP 1 Score: 273 bits (699), Expect = 2.850e-85 Identity = 134/231 (58.01%), Postives = 164/231 (71.00%), Query Frame = 1 Query: 127 KMIKPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHVRDGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEG--EGEAWYELTKESLEMINLKPQS 813 ++ KP RI++VRHGES GN+DE Y PDW +PL+ GHE AR TGR +K V D P++ YTSPY RTKQTL+ ++E+F N +GVREEPR+TEQQFGNFQ ER FGRFY+RFP GESGLDVY R TSFI+TMFRDFA+ I R D+ ++IVTHGLTLRLL+MRWF+ ++ FEST NPPNG FVVM R+ P G G YE+ ES +I+L S Sbjct: 171 QITKPHRIILVRHGESTGNVDERVYVETPDWKVPLSPIGHEQARQTGRQLKALVGDEPLYIYTSPYRRTKQTLSNILESFEDNLKVGVREEPRITEQQFGNFQCQQLMQQAKKERCNFGRFYFRFPNGESGLDVYTRVTSFISTMFRDFADGHICRPDLNIVIVTHGLTLRLLLMRWFKLTVDTFESTTNPPNGSFVVMTRKEGPRGGRSGGGVYEMAPESAALISLSCDS 401
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A7S3XT41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT41_HETAK) HSP 1 Score: 245 bits (625), Expect = 2.220e-77 Identity = 123/192 (64.06%), Postives = 147/192 (76.56%), Query Frame = 1 Query: 292 DGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEGEGEAWYELTKESLEMINLKPQSAEGLSLPKLLSQLPKVSK 867 D P+ FY SPY RTKQTLAGM+ A +N+IIG REEPRLTEQQFGNFQN ERARFGRFYYRFP+GESGLDVYNR+TSFIATM RD ANP +AR + +IVTHGLTLRL +MRWF+YS+ +FE + NPPNGG V+ME+ ++P+G E WYELT +SLE++ K Q G SL KLL LP+V + Sbjct: 1 DAPLLFYCSPYRRTKQTLAGMMGALETNDIIGAREEPRLTEQQFGNFQNVLTTRQSKDERARFGRFYYRFPQGESGLDVYNRSTSFIATMHRDMANPALARPGLHSVIVTHGLTLRLFLMRWFQYSVEDFEESHNPPNGGVVIMEKVSDPQGRHE-WYELTDDSLELLKFKRQHRYG-SLWKLLDGLPQVDE 190
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A7S0SR39_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR39_9STRA) HSP 1 Score: 242 bits (617), Expect = 9.950e-75 Identity = 115/207 (55.56%), Postives = 153/207 (73.91%), Query Frame = 1 Query: 121 VGKMIKPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHV-RDGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFANPLIAR---DDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMER 729 + K+ P+RI++VRHGES+GN+DE AY ++PDW IPLT++G E A N G+ +K+ + + P+ Y SPY+RTKQT A M++ ++N +I VREEPRLTEQQFGNFQ ER +FGRFYYRFP+GESGLDVY+R +SFI T+FR++A R +D +IIVTHGLTLRL +MRWF++S+ EFE+T NP NG +VM R Sbjct: 39 MNKLRLPKRIILVRHGESLGNVDELAYCSMPDWKIPLTEKGKEQASNVGKKIKEIIGNNSPISVYLSPYIRTKQTFALMIKELSNNNVITVREEPRLTEQQFGNFQKAEDMIRYKKERGQFGRFYYRFPDGESGLDVYSRVSSFIGTLFREWAKEQSTRSNHEDNNIIIVTHGLTLRLFLMRWFQFSVSEFENTRNPNNGDIIVMNR 245
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A8J5XQ82_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQ82_DIALT) HSP 1 Score: 231 bits (590), Expect = 4.030e-71 Identity = 112/227 (49.34%), Postives = 154/227 (67.84%), Query Frame = 1 Query: 136 KPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHVR--DGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRD---FANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEGEGEAWYELTKESLEMINL 801 +P+RIV+VRHGES+GNLDE Y T PDW+IPLT++G E+A GR + + + D VFFY SPYLR + TL MV +++GVREEPR++EQQFGN Q+ +R FGRFYYRFP+GES LDVY+R +SFIAT++RD + + ++ +++V HGL+ R +MRWF+ + +FE N PNG +VMER+ N GE WYEL++ES ++NL Sbjct: 30 RPRRIVLVRHGESLGNLDEAVYTTTPDWMIPLTQRGIEEAMAAGRALNKLLAHPDANVFFYHSPYLRARMTLDEMVAQLDPQKVVGVREEPRISEQQFGNLQSVALMQEAKSDRNAFGRFYYRFPDGESALDVYSRVSSFIATVYRDVDSMRSQRVLTEETHIVMVAHGLSARTFIMRWFQLPVADFEKLANQPNGSLLVMERQQN--AAGEQWYELSQESWNLLNL 254
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Match: A0A7S3QIR9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIR9_9STRA) HSP 1 Score: 228 bits (580), Expect = 2.600e-69 Identity = 109/225 (48.44%), Postives = 154/225 (68.44%), Query Frame = 1 Query: 136 KPQRIVIVRHGESMGNLDETAYGTIPDWLIPLTKQGHEDARNTGRLVKQHVRDGPVFFYTSPYLRTKQTLAGMVEAFTSNEIIGVREEPRLTEQQFGNFQNXXXXXXXXXERARFGRFYYRFPEGESGLDVYNRATSFIATMFRD---FANPLIARDDITVIIVTHGLTLRLLVMRWFRYSILEFESTFNPPNGGFVVMERRNNPEGEGEAWYELTKESLEMINL 801 +P RI+++RHGES+GN+D++AY PDW +PLT++G + + + G+ + V DG VFFY SPY RT+ T+ +++ ++II REEPR++EQQFGNFQN ER FGRFYYRF GE+GLDVY+R +SFI+T+ RD + D + V+IVTHGL+LRL +MRWF++ + EFE+T NP N VVM++R P G WYEL +++ E +NL Sbjct: 61 RPTRIILIRHGESLGNVDDSAYVATPDWKVPLTERGRQQSFDAGKELADIVGDGQVFFYYSPYKRTRATVDELLKHINKSQIISTREEPRISEQQFGNFQNVEQVWESKKERHEFGRFYYRFKSGEAGLDVYSRVSSFISTLVRDCQQYQKAGYELDTVNVVIVTHGLSLRLFLMRWFQFGVEEFEATKNPDNAALVVMKKRCPPGGH--RWYELDEKNREELNL 283 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_977.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_977.1.1 >prot_C-australica_Contig_977.1.1 ID=prot_C-australica_Contig_977.1.1|Name=mRNA_C-australica_Contig_977.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=336bp SLAELRPRKGTRCYYASTRRMNYSPHADQNSLAIHAQNAGVGKMIKPQRIback to top mRNA from alignment at C-australica_Contig_977:637..2287+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_977.1.1 ID=mRNA_C-australica_Contig_977.1.1|Name=mRNA_C-australica_Contig_977.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1651bp|location=Sequence derived from alignment at C-australica_Contig_977:637..2287+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_977:637..2287+ >mRNA_C-australica_Contig_977.1.1 ID=mRNA_C-australica_Contig_977.1.1|Name=mRNA_C-australica_Contig_977.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1008bp|location=Sequence derived from alignment at C-australica_Contig_977:637..2287+ (Chrysoparadoxa australica CS_1217)back to top |