mRNA_C-australica_Contig_976.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_976.5.1
Unique NamemRNA_C-australica_Contig_976.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_976.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_976contigC-australica_Contig_976:10591..13762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1373
Hectar predicted targeting categoryother localisation
Exons11
Cds size1164
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_976.5.1prot_C-australica_Contig_976.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_976 10787..13650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.1149366-UTR-C-australica_Contig_976:10590..106601682588842.1149366-UTR-C-australica_Contig_976:10590..10660Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 10591..10660 +
1682588842.1253388-UTR-C-australica_Contig_976:10759..107861682588842.1253388-UTR-C-australica_Contig_976:10759..10786Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 10760..10786 +
1682588842.230803-UTR-C-australica_Contig_976:13650..137621682588842.230803-UTR-C-australica_Contig_976:13650..13762Chrysoparadoxa australica CS_1217UTRC-australica_Contig_976 13651..13762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.1443107-CDS-C-australica_Contig_976:10786..108221682588842.1443107-CDS-C-australica_Contig_976:10786..10822Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 10787..10822 +
1682588842.1577446-CDS-C-australica_Contig_976:11004..111851682588842.1577446-CDS-C-australica_Contig_976:11004..11185Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 11005..11185 +
1682588842.168392-CDS-C-australica_Contig_976:11352..114471682588842.168392-CDS-C-australica_Contig_976:11352..11447Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 11353..11447 +
1682588842.1763842-CDS-C-australica_Contig_976:11650..117171682588842.1763842-CDS-C-australica_Contig_976:11650..11717Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 11651..11717 +
1682588842.1841407-CDS-C-australica_Contig_976:11947..120661682588842.1841407-CDS-C-australica_Contig_976:11947..12066Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 11948..12066 +
1682588842.1918197-CDS-C-australica_Contig_976:12256..123061682588842.1918197-CDS-C-australica_Contig_976:12256..12306Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 12257..12306 +
1682588842.1996176-CDS-C-australica_Contig_976:12443..125561682588842.1996176-CDS-C-australica_Contig_976:12443..12556Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 12444..12556 +
1682588842.2074096-CDS-C-australica_Contig_976:12765..129451682588842.2074096-CDS-C-australica_Contig_976:12765..12945Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 12766..12945 +
1682588842.215189-CDS-C-australica_Contig_976:13230..134711682588842.215189-CDS-C-australica_Contig_976:13230..13471Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 13231..13471 +
1682588842.2230856-CDS-C-australica_Contig_976:13568..136501682588842.2230856-CDS-C-australica_Contig_976:13568..13650Chrysoparadoxa australica CS_1217CDSC-australica_Contig_976 13569..13650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_976.5.1

>prot_C-australica_Contig_976.5.1 ID=prot_C-australica_Contig_976.5.1|Name=mRNA_C-australica_Contig_976.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=388bp
MRPKRLILAKLQAARRAREFEAARMRELDKRDGMPVPWRVACQSLMGQCS
AKDSITQGAIANSSNWQGSNVGDVTRITSRPSMASSLTRSSTTYLSMLRS
KTSQISSAPGKSRGAEDFVYGLVYGEGNESKAEAEFIGFGTSRMSANDTS
SSYITPIRCPIPAPKKVSEIRAPETFDDLEWERHEAFFLQAIAAMENDGI
ACSPSHGNKPSFYAPTKPHTGPSLGFRQSQFTPRRPSTRGQNTSDQNKEL
HKLACRYRYGGRPPFTASRQQEQQQGPLETRWPLAAAGDRAATVPAVPWP
MDAKGPESPSSRRKGRRGCRQATGRRLLVSAPSRRVSYWEDERFKLKKRL
QRKQLYESFSRRVYGRCENIRSNQVCTDNCDRRIKVD*
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mRNA from alignment at C-australica_Contig_976:10591..13762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_976.5.1 ID=mRNA_C-australica_Contig_976.5.1|Name=mRNA_C-australica_Contig_976.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3172bp|location=Sequence derived from alignment at C-australica_Contig_976:10591..13762+ (Chrysoparadoxa australica CS_1217)
CACGCGCAAGAAGCTCCGCCTTGGGGGATCAACACCTCTTTACGACCAGG
CCATTCATGAGGAGGCTCAGGTTAGTGTCGGAGTGTCAGGATACTATAGT
TATAGTTTACTTTAGTAGTTGCAGTAGTAAGTGGAATGCCACGCTAACCC
TTTGATGAATTTCCTCCAGGCTAGGTTTCGACAAGTCCTAAGCTTGATGC
GGCCGAAGCGGCTGATATTAGCCAAACTTCAGGTAATGCCATTACATCAG
TACTGCCTTCGTAAGGCCTGAATCCACGGCAAATCACCAAGAAATATTTG
AGGCCGTTCCTCTTTTATAGCTCCTGATCTGACTTGACCTGACCTAACTT
TCGGGACACCAAGGCAATCAAGGCTAGACCACCAATGAGCAACAAATGTG
CCTTCACATCTCAGGCAGCAAGGCGTGCCAGAGAATTTGAGGCAGCCAGG
ATGCGTGAGTTGGACAAGCGTGATGGCATGCCAGTCCCTTGGCGGGTAGC
CTGCCAATCGCTGATGGGGCAGTGCTCAGCAAAAGACAGCATCACACAGG
GGGCTATTGCGAACTCCAGCAACTGGCAGGGCAGCAATGTGGGAGGTGGG
TTTTATATCTCATGTTGCCTCGAGACCTTAACCTAAATCTTTCATCTTGG
TGCCACTGAAGGCTCAATTACACAAGATGCAATCGGCTAATTGTCAATTT
CAATCAGCCTTTATAAGCAAATGGCTGAATCATAACGCACGCTTCCTTTT
GCTTGCTGTAAGATGTCACACGGATCACTTCTAGGCCAAGTATGGCATCT
TCTCTCACAAGGAGTAGCACAACTTACCTCTCAATGTTACGCAGCAAGAC
CTCACAGGTGAGTACTTGTCATACATGAGAAGCAGAGCACGTTAGGTTAT
CGCTTGGTTATGACACGTAACAAAGCCCAAAACCTCTTCCCATTTCTTTT
TCCCACTGATTTCTTCCATTCTTTTTATTATTTTGCACCTCTTTCCCCGC
TATTCTTTACATTACATCTGTCTAGAACACCAGTCCAACATTTAATTGCT
TTCTCTCCAGATTTCAAGTGCTCCTGGTAAGTCAAGGGGGGCTGAAGACT
TTGTTTATGGTCTGGTGTATGGTGAAGGTGAGCACTGTTATGACCTATTC
TCTAGAGGAGGGGCCCTACAGATCGAGCAATAGTCAACTTAGTAGTTTAC
AGGTAGAAGAAATGACACAAGAGTGCAGTGAGCTTTCTGCTTGAATGAGA
AATGAAAGCCGTCCTTTATGTTTTTTTGGCATGTTTGTTATTTCTGTGAA
GGGCAGGCCGACTTACTTCCTAGTGCACCCTGACGAATAAGCGTGATGCT
CATGTAGGGAACGAGTCAAAGGCTGAGGCTGAGTTCATAGGGTTTGGAAC
GTCAAGGATGTCCGCAAATGATACATCGTCATCATACATCACCCCCATCA
GATGCCCCATCCCAGCACCAAAGAAGGTAAACTCTCATATCAGGCTTTAA
TCTCACACTTTAGCCCCTCTCTACACCTCTCCTCTTCCCAACATGCATCT
CAGTGCATAATTTCACTATTTCCCATGAAGAATAACCCATGCGTGCATCT
GCTAGTGCGTCCTGCTTCAGCTCTTATCATTATCATGCATTCTGATGTTG
CATCGCTGTTTTTCAGGTTTCTGAAATTAGGGCTCCAGAGACATTTGATG
ATTTGGAATGGGAGAGGTAATGAATGAGATCACCATGAAGGAAAGGGCAA
CAAAAAGCTCTTCATGGCCATGAGTGGGAGCACGTGAAAGCTGCAGAAAT
GATGACATGCCACACTCCTCAGTCCCTATAAACCTGCTCTCACCCACCTC
CAGGCACGAGGCCTTTTTTCTCCAAGCAATAGCAGCAATGGAAAACGATG
GCATAGCTTGCAGTCCAAGTCACGGAAATAAACCCAGCTTTTACGCTCCC
ACGAAGCCTCACACTGGTATGTCATCATGGCGATGTTGGTGCTTGTCTTT
GTCTGATGTGTTGGTGGGTGATTTTTCGGATCTAACTTTTCTGACCACAG
AGCAAGAAACGCCCCTTAGTATACATAGCTCCTGTTGACACGCTAGTAGA
CACCCCACGGATAATAATATCCGCATCATGAAGCAGCTTGCCAATCAGCA
ATGCAATAAACACAACACTCAACAGGTCCCAGCTTGGGCTTTCGGCAGTC
TCAATTCACACCTCGACGGCCGTCAACTCGAGGTCAAAACACATCAGATC
AGAACAAGGAGCTGCACAAACTGGCATGCAGATACAGATACGGTGGTCGG
CCCCCTTTCACTGCTTCGCGTCAGCAAGAACAGCAGCAAGGACCTCTCGA
GACACGTGTGTATTAATGCCTATCCATGACCCTTTCAGTTCACCTCAGCT
GCCCCGAAGCCGCTCCAAAACTCCCATTAGGACTGATTTTATACTTACCT
GAGGATTTCCCTTTTTGCTGCTCGCTGTTCATCACTTCATATGGCCACTC
CCTACCTTTAGCCCCTCTTCACCATATGTGTTGTACTGCCTCCTATATCT
TCCCATCCCTCTCCCAGCTTGCCGGATCCTTGCTTGGTTGCACCCACACA
TCTATGGCAGCTCTTACTGATCCTGCCCTCCTCTCCACAGGCTGGCCCCT
AGCTGCTGCTGGCGACAGGGCAGCCACTGTTCCTGCAGTGCCTTGGCCTA
TGGATGCTAAAGGCCCAGAGAGCCCTAGTAGTAGAAGGAAAGGCAGAAGA
GGATGCAGGCAAGCTACTGGAAGGAGGTTGCTGGTGTCAGCACCTTCAAG
GAGGGTCAGCTACTGGGAAGATGAAAGGTTTAAACTGAAGAAGAGGTTGC
AGCGTAAGCAGCTATACGAATCATTTAGCAGGTAATTAGTTACATGCAGT
AGCAAATGACTTGTTGGTTTTGAACCTTAGCTGGTTTTTACTGCGTTACA
GCTGAAGCTTCTGTTCTGAACCTCTCAGGCGGGTGTATGGTAGATGTGAG
AATATCAGGAGCAACCAGGTGTGCACTGATAACTGTGACCGAAGAATAAA
AGTTGACTAAAGTCCTCCATTGGAGTGCTTGGAAGTTTAGCCTTCCAGTC
CACTCAGCCTTCAACTACAGCAGGCACACGCATTGCGAGGTCAGATATTG
TAGCTAAGTGAGGTGTACAAAT
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Coding sequence (CDS) from alignment at C-australica_Contig_976:10591..13762+

>mRNA_C-australica_Contig_976.5.1 ID=mRNA_C-australica_Contig_976.5.1|Name=mRNA_C-australica_Contig_976.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1164bp|location=Sequence derived from alignment at C-australica_Contig_976:10591..13762+ (Chrysoparadoxa australica CS_1217)
ATGCGGCCGAAGCGGCTGATATTAGCCAAACTTCAGGCAGCAAGGCGTGC
CAGAGAATTTGAGGCAGCCAGGATGCGTGAGTTGGACAAGCGTGATGGCA
TGCCAGTCCCTTGGCGGGTAGCCTGCCAATCGCTGATGGGGCAGTGCTCA
GCAAAAGACAGCATCACACAGGGGGCTATTGCGAACTCCAGCAACTGGCA
GGGCAGCAATGTGGGAGATGTCACACGGATCACTTCTAGGCCAAGTATGG
CATCTTCTCTCACAAGGAGTAGCACAACTTACCTCTCAATGTTACGCAGC
AAGACCTCACAGATTTCAAGTGCTCCTGGTAAGTCAAGGGGGGCTGAAGA
CTTTGTTTATGGTCTGGTGTATGGTGAAGGGAACGAGTCAAAGGCTGAGG
CTGAGTTCATAGGGTTTGGAACGTCAAGGATGTCCGCAAATGATACATCG
TCATCATACATCACCCCCATCAGATGCCCCATCCCAGCACCAAAGAAGGT
TTCTGAAATTAGGGCTCCAGAGACATTTGATGATTTGGAATGGGAGAGGC
ACGAGGCCTTTTTTCTCCAAGCAATAGCAGCAATGGAAAACGATGGCATA
GCTTGCAGTCCAAGTCACGGAAATAAACCCAGCTTTTACGCTCCCACGAA
GCCTCACACTGGTCCCAGCTTGGGCTTTCGGCAGTCTCAATTCACACCTC
GACGGCCGTCAACTCGAGGTCAAAACACATCAGATCAGAACAAGGAGCTG
CACAAACTGGCATGCAGATACAGATACGGTGGTCGGCCCCCTTTCACTGC
TTCGCGTCAGCAAGAACAGCAGCAAGGACCTCTCGAGACACGCTGGCCCC
TAGCTGCTGCTGGCGACAGGGCAGCCACTGTTCCTGCAGTGCCTTGGCCT
ATGGATGCTAAAGGCCCAGAGAGCCCTAGTAGTAGAAGGAAAGGCAGAAG
AGGATGCAGGCAAGCTACTGGAAGGAGGTTGCTGGTGTCAGCACCTTCAA
GGAGGGTCAGCTACTGGGAAGATGAAAGGTTTAAACTGAAGAAGAGGTTG
CAGCGTAAGCAGCTATACGAATCATTTAGCAGGCGGGTGTATGGTAGATG
TGAGAATATCAGGAGCAACCAGGTGTGCACTGATAACTGTGACCGAAGAA
TAAAAGTTGACTAA
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