mRNA_C-australica_Contig_971.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_971.3.1
Unique NamemRNA_C-australica_Contig_971.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_971.3.1 vs. uniprot
Match: D7FMQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.230e-14
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  205 YNQFGHCSLHHPMNAHKVVTPKPRCPHCSIREPCGHCQYDRAREKLINYC 354
            +N+ G CS HHP++AH V  PKPRCP C+IR PCGHC YD++R  L  +C
Sbjct:  293 FNERGRCSNHHPLDAHVVEVPKPRCPQCTIRLPCGHCDYDQSRRSLHTFC 342
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_971.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMQ3_ECTSI3.230e-1458.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_971contigC-australica_Contig_971:1338..2046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMQ3
Model size406
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Evalue4.43e-10
EggNOG OGs2C4V1@1|root,2RY2V@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-23_001180.1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588838.4476736-CDS-C-australica_Contig_971:1337..13941682588838.4476736-CDS-C-australica_Contig_971:1337..1394Chrysoparadoxa australica CS_1217CDSC-australica_Contig_971 1338..1394 -
1682588838.4565716-CDS-C-australica_Contig_971:1555..16281682588838.4565716-CDS-C-australica_Contig_971:1555..1628Chrysoparadoxa australica CS_1217CDSC-australica_Contig_971 1556..1628 -
1682588838.464526-CDS-C-australica_Contig_971:1771..18061682588838.464526-CDS-C-australica_Contig_971:1771..1806Chrysoparadoxa australica CS_1217CDSC-australica_Contig_971 1772..1806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588838.4725316-UTR-C-australica_Contig_971:1806..20461682588838.4725316-UTR-C-australica_Contig_971:1806..2046Chrysoparadoxa australica CS_1217UTRC-australica_Contig_971 1807..2046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_971.3.1prot_C-australica_Contig_971.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_971 1338..1806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_971.3.1

>prot_C-australica_Contig_971.3.1 ID=prot_C-australica_Contig_971.3.1|Name=mRNA_C-australica_Contig_971.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=55bp
MNAHKVVTPKPRCPHCSIREPCGHCQYDRAREKLINYCNESIGKWELTKQ
GFIEG
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mRNA from alignment at C-australica_Contig_971:1338..2046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_971.3.1 ID=mRNA_C-australica_Contig_971.3.1|Name=mRNA_C-australica_Contig_971.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=709bp|location=Sequence derived from alignment at C-australica_Contig_971:1338..2046- (Chrysoparadoxa australica CS_1217)
GCCTCAGAGAGGGGAAGACAGCTTGAACTGCGGAATCTTCCTAAAGACTG
GGGCATGCAGGGTGAGAGCTAACAGATAGGGCCATGTTCTCACTCCCTTT
TTCCTGGGTTCTGTTCTGAGACTTGAAAACACACATTGCAACATGCGGTA
TCAGCCATGCCTTTCACATGACCCGTCCTGATTCCAACGCTGATACCACA
GGTGTACAACCAATTTGGGCACTGCAGCCTGCACCACCCGATGAACGCGC
ACAAAGTTGTCACCCCTAAACCAAGGTAATCGTGTTGTGACCTGCTGCGC
GTGAGGGTCAGCCCTGCGTGAGCGAGCAAGTCTATACCCTATGGGTAGGC
ACCATAAGGCAGGCACCTCAGGGGCAACTCATTCATGCTGTGCCTGCTGG
ACGCTTCTGCTCATTCAGGTGTCCGCATTGCAGCATCAGGGAGCCCTGTG
GGCATTGCCAGTATGATAGAGCAAGAGAGAAGCTCATCAATGTAAGTGTG
CACATCTCTCAAACAGTGCCGCTTGAATAGCGGAATGTATCTGTACCAGG
CCTGCGTAGTCCAAGTCTGCAATTCTCCACTAAATGTATTCCCACTGTAG
CAGACTGGCATCCTTTTTCTCACCTTGCACTTATCCTCATCTTTCTCAAC
AGTACTGCAATGAAAGCATAGGGAAGTGGGAGCTAACAAAGCAGGGCTTT
ATTGAAGGG
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Coding sequence (CDS) from alignment at C-australica_Contig_971:1338..2046-

>mRNA_C-australica_Contig_971.3.1 ID=mRNA_C-australica_Contig_971.3.1|Name=mRNA_C-australica_Contig_971.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=165bp|location=Sequence derived from alignment at C-australica_Contig_971:1338..2046- (Chrysoparadoxa australica CS_1217)
ATGAACGCGCACAAAGTTGTCACCCCTAAACCAAGGTGTCCGCATTGCAG
CATCAGGGAGCCCTGTGGGCATTGCCAGTATGATAGAGCAAGAGAGAAGC
TCATCAATTACTGCAATGAAAGCATAGGGAAGTGGGAGCTAACAAAGCAG
GGCTTTATTGAAGGG
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