mRNA_C-australica_Contig_97.9.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_97.9.1
Unique NamemRNA_C-australica_Contig_97.9.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_97.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_97contigC-australica_Contig_97:37679..38099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons2
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588835.1194582-CDS-C-australica_Contig_97:37680..378721682588835.1194582-CDS-C-australica_Contig_97:37680..37872Chrysoparadoxa australica CS_1217CDSC-australica_Contig_97 37681..37872 -
1682588835.1292763-CDS-C-australica_Contig_97:38066..380991682588835.1292763-CDS-C-australica_Contig_97:38066..38099Chrysoparadoxa australica CS_1217CDSC-australica_Contig_97 38067..38099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_97.9.1prot_C-australica_Contig_97.9.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_97 37681..38099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_97.9.1

>prot_C-australica_Contig_97.9.1 ID=prot_C-australica_Contig_97.9.1|Name=mRNA_C-australica_Contig_97.9.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=75bp
EEDGTSPEEHAAYVRDLSWWSATELAAVTSDGHMHFLPARPGSLSLPAAA
PPTFPPLSSLACLGDGRSALLCQPV
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mRNA from alignment at C-australica_Contig_97:37679..38099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_97.9.1 ID=mRNA_C-australica_Contig_97.9.1|Name=mRNA_C-australica_Contig_97.9.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=421bp|location=Sequence derived from alignment at C-australica_Contig_97:37679..38099- (Chrysoparadoxa australica CS_1217)
GAAGAGGACGGCACCAGCCCTGAGGAGCACGCTGTGAGTGATGTGTGAGA
GCACTGGATGCGTGAGAGCGTGCTTGTTGTGACACGGGTTGCTCTACCTG
CTGCTGAAGTCCACCTGTCAGGCTCCCTCTCATCCCAAACCTACTTCCTC
TCATCCCACGCTTGCTCTATCTCATCCCATGCCTGCTCCCTCTCATCCCA
CGCTTGCTCCCTCTCATCCCACTCCAGGCGTACGTCCGTGACCTGTCGTG
GTGGTCCGCCACCGAGCTGGCAGCAGTGACCTCCGACGGCCACATGCACT
TCCTCCCGGCTAGACCTGGCTCCCTCAGCCTGCCAGCTGCAGCTCCACCA
ACCTTCCCACCTCTTAGCTCGCTGGCGTGCCTTGGGGATGGTAGGAGCGC
CCTCCTGTGCCAGCCTGTGCC
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Coding sequence (CDS) from alignment at C-australica_Contig_97:37679..38099-

>mRNA_C-australica_Contig_97.9.1 ID=mRNA_C-australica_Contig_97.9.1|Name=mRNA_C-australica_Contig_97.9.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=225bp|location=Sequence derived from alignment at C-australica_Contig_97:37679..38099- (Chrysoparadoxa australica CS_1217)
GAAGAGGACGGCACCAGCCCTGAGGAGCACGCTGCGTACGTCCGTGACCT
GTCGTGGTGGTCCGCCACCGAGCTGGCAGCAGTGACCTCCGACGGCCACA
TGCACTTCCTCCCGGCTAGACCTGGCTCCCTCAGCCTGCCAGCTGCAGCT
CCACCAACCTTCCCACCTCTTAGCTCGCTGGCGTGCCTTGGGGATGGTAG
GAGCGCCCTCCTGTGCCAGCCTGTG
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