mRNA_C-australica_Contig_10445.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10445.1.1
Unique NamemRNA_C-australica_Contig_10445.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: UPI001FF15E2D (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Muricauda sp. F6463D TaxID=2926409 RepID=UPI001FF15E2D)

HSP 1 Score: 135 bits (339), Expect = 2.670e-34
Identity = 65/128 (50.78%), Postives = 90/128 (70.31%), Query Frame = 1
Query:   10 EMRTSILIIFCFLATLPGAIS-----QSDKTDIYVSPVGSDANPGTMELPLLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNND 378
            +++T    I  FL  +  + S     +++KT+IYVSP G+DANPGT ELPL TL  A++HVR+IK+  +GD+NVW R G+Y L+ETVVF LEDSG  +  I Y AYP EKPVF+S   IK W+K++++
Sbjct:    5 KIKTDKNFILLFLTVIVISFSACNNEKNNKTNIYVSPQGNDANPGTKELPLATLNAAKNHVRKIKSSTKGDINVWLRGGKYNLDETVVFGLEDSGEGESMIIYQAYPDEKPVFTSDVPIKSWKKLDSE 132          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: A0A2E1AWH9_9FLAO (Peptidase n=1 Tax=Muricauda sp. TaxID=192149 RepID=A0A2E1AWH9_9FLAO)

HSP 1 Score: 118 bits (295), Expect = 2.530e-28
Identity = 66/137 (48.18%), Postives = 85/137 (62.04%), Query Frame = 1
Query:   13 MRTSILIIFCFLATLP---GAISQSDKT---DIYVSPVGSDANPGTM--------ELPLLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
            M  SI  I   +A +    G I+Q+D+T   D YVSP GSD   GT+        + P  TL+ ARD VR++K  A  D+ V  R G Y L ET+VF LEDSG ++ +ITY+AYPGE+P+FSSG+EI GW KV  DL
Sbjct:    1 MLKSIFAIVFLIAGISFSHGQITQADQTKKADFYVSPTGSDNWSGTLSEPNALGTDGPFATLEAARDAVRELKKSADKDILVLVRNGIYILRETIVFGLEDSGTENASITYAAYPGEQPIFSSGQEITGWTKVTQDL 137          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: UPI001C0EBB59 (hypothetical protein n=1 Tax=Formosa algae TaxID=225843 RepID=UPI001C0EBB59)

HSP 1 Score: 109 bits (272), Expect = 5.090e-28
Identity = 63/126 (50.00%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   25 ILIIFCFLATLPG-AISQSD-KTDIYVSPVGSDANPGTMELP--------LLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVN 372
            I+++ C  A+  G A S++D K D YVS  GSD   GT+E P          TL+ ARD VR +K   + D+ V  R G Y L ETVVF LEDSG D+  ITY+AYPGE PVFSSG+EI  W+K N
Sbjct:   16 IIVLACITASCNGIAQSKTDNKADFYVSTEGSDNWSGTLEKPNAKGTDGPFATLEQARDAVRLLKKSKQIDIKVLIREGVYPLKETVVFGLEDSGEDESIITYAAYPGETPVFSSGQEINDWKKCN 141          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: A0A6N4WV44_9BACT (Unannotated n=3 Tax=Lentimonas TaxID=417293 RepID=A0A6N4WV44_9BACT)

HSP 1 Score: 115 bits (288), Expect = 2.240e-27
Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 TNLEMRTSI---LIIFCFLATLPGAISQSD--KTDIYVSPVGSDANPGTM--------ELPLLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
            TN+ +  S    L +   +  L  ++  +D  + D Y  P GSDA  GT+        + P  TL+ ARD VR +K    GD+ V  R G Y L+ETVVF LEDSG+ +  ITY+AYPGE PVFSSGKEIKGW+KV   L
Sbjct:    3 TNVALSASYPMQLYLILIITLLVSSVCNADSIQADFYCHPQGSDAWSGTLAEPNMTGTDGPFATLERARDAVRGLKQRQSGDIQVLLRGGTYLLSETVVFGLEDSGSSESTITYAAYPGETPVFSSGKEIKGWKKVTGSL 142          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: UPI001C068FE5 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI001C068FE5)

HSP 1 Score: 114 bits (286), Expect = 4.160e-27
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   25 ILIIFCFLATLPGAISQSDKTDIYVSPVGSDANPGTMELPLL--------TLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
            +L +    A     +S  +  D YVS  GSD   GT+E P L        TL+ ARD VR++K     D+ V+ R G Y L ETVVF L+DSG D+L+ITY AYPGE P+FSSG+EI GW+KV +D+
Sbjct:    8 LLTLIISFACNSSDMSAQNNADFYVSTQGSDDWSGTLETPNLEGTDGPFATLERARDAVRKLKKKKSDDITVFIREGVYPLKETVVFGLKDSGEDNLSITYEAYPGETPIFSSGQEINGWKKVTDDI 134          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: UPI001FF130A0 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Cellulophaga sp. F20128 TaxID=2926413 RepID=UPI001FF130A0)

HSP 1 Score: 114 bits (286), Expect = 4.180e-27
Identity = 61/134 (45.52%), Postives = 79/134 (58.96%), Query Frame = 1
Query:   13 MRTSILIIFCFLATLPGAISQSD---KTDIYVSPVGSDANPGTM--------ELPLLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
            M+  +++I   +      +SQ+    K D+Y+S  GSD   GT+        + P  TL  ARD VR +K      + V  R G Y LN+TVVF LEDSG  +  ITY+AYPGEKPVFSSGKEIKGW+KV  +L
Sbjct:    1 MKRQLILILTLMFGSFNCVSQTSLNSKADLYISTKGSDTWSGTLASPNSQKTDGPFATLARARDEVRHLKKRKSEHIVVHIREGNYLLNKTVVFGLEDSGEGEYTITYAAYPGEKPVFSSGKEIKGWKKVTTEL 134          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: A0A6C2U7S0_9BACT (Beta_helix domain-containing protein n=1 Tax=Pontiella desulfatans TaxID=2750659 RepID=A0A6C2U7S0_9BACT)

HSP 1 Score: 114 bits (284), Expect = 7.780e-27
Identity = 59/127 (46.46%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   25 ILIIFCFLATLPGAISQSDKTDIYVSPVGSDANPGTM--------ELPLLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
            ++++   L    G  +     D Y+SP GSDA  GT+        + P  TL+ ARD VR +K     D+ V  R G Y L +TVVF LEDSG+D  +ITY+AYPGE PVFSSG+EIKGW+KV+  L
Sbjct:    8 LILLGMLLLVSVGGFAAPPPADFYLSPNGSDAWSGTLAEPNAQGTDGPFATLERARDAVRTLKKSTSADIEVLVREGTYLLEKTVVFGLEDSGDDTRSITYAAYPGETPVFSSGREIKGWKKVSGRL 134          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: A0A2K2ZEF5_9FLAO (Peptidase n=2 Tax=Formosa algae TaxID=225843 RepID=A0A2K2ZEF5_9FLAO)

HSP 1 Score: 113 bits (283), Expect = 1.060e-26
Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   13 MRTSILIIFCFLATLPGAISQSD---KTDIYVSPVGSDANPGTMELP--------LLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
            M+  ++ +F  +     +++Q++   K D YVS  GSD+  GT+  P          TL+ ARD VR +K     D+ V+ R G Y LN+TVVF LEDSG  +  ITY+AYPGE PVFSSGKEI GW+KV  D+
Sbjct:    1 MKHYLIFMFTLIIISMTSVAQTESAEKADFYVSTKGSDSWSGTLSAPNAKGSDGPFATLERARDAVRDLKKKTSKDITVFVRDGVYQLNKTVVFDLEDSGEGESTITYAAYPGETPVFSSGKEINGWKKVTTDI 134          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: UPI0018EECB93 (hypothetical protein n=1 Tax=Cellulophaga sp. L1A9 TaxID=2686362 RepID=UPI0018EECB93)

HSP 1 Score: 104 bits (259), Expect = 8.490e-26
Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   82 KTDIYVSPVGSDANPGTMELP--------LLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
              D YVS  GSDA  GT++ P          TL  A++ VR +K     D+ V  R G Y LN+TVVF LEDSG     ITY+AYP EKPVFSSGKEI+GWEKV  D+
Sbjct:   30 NADFYVSTSGSDAWSGTLDRPNSQGTDGPFATLDQAKNAVRTLKKSKSQDIVVLIRDGIYKLNKTVVFGLEDSGEGKSTITYAAYPSEKPVFSSGKEIQGWEKVTTDI 137          
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Match: A0A1B1Y5P3_9FLAO (Peptidase n=1 Tax=Wenyingzhuangia fucanilytica TaxID=1790137 RepID=A0A1B1Y5P3_9FLAO)

HSP 1 Score: 110 bits (276), Expect = 9.350e-26
Identity = 63/127 (49.61%), Postives = 75/127 (59.06%), Query Frame = 1
Query:   25 ILIIFCFLATLPGAISQSDKTDIYVSPVGSD------ANPGTM--ELPLLTLKGARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAYPGEKPVFSSGKEIKGWEKVNNDL 381
            IL I   L       +QS K D Y+S  GSD      A+P     + P  TL  A++ VR +K     D+ V  R G Y LN TVVF LEDSG +D+ ITY+AYPGE PVFSSGKEIKGWEKV  D+
Sbjct:    4 ILFISLMLVVSISCFAQS-KADFYISTEGSDDWSGKLASPNEQGTDGPFATLTHAKEAVRTLKKTKLTDIIVLIREGVYKLNNTVVFGLEDSGQEDMTITYAAYPGETPVFSSGKEIKGWEKVTKDI 129          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FF15E2D2.670e-3450.78right-handed parallel beta-helix repeat-containing... [more]
A0A2E1AWH9_9FLAO2.530e-2848.18Peptidase n=1 Tax=Muricauda sp. TaxID=192149 RepID... [more]
UPI001C0EBB595.090e-2850.00hypothetical protein n=1 Tax=Formosa algae TaxID=2... [more]
A0A6N4WV44_9BACT2.240e-2745.71Unannotated n=3 Tax=Lentimonas TaxID=417293 RepID=... [more]
UPI001C068FE54.160e-2747.24right-handed parallel beta-helix repeat-containing... [more]
UPI001FF130A04.180e-2745.52right-handed parallel beta-helix repeat-containing... [more]
A0A6C2U7S0_9BACT7.780e-2746.46Beta_helix domain-containing protein n=1 Tax=Ponti... [more]
A0A2K2ZEF5_9FLAO1.060e-2644.78Peptidase n=2 Tax=Formosa algae TaxID=225843 RepID... [more]
UPI0018EECB938.490e-2651.85hypothetical protein n=1 Tax=Cellulophaga sp. L1A9... [more]
A0A1B1Y5P3_9FLAO9.350e-2649.61Peptidase n=1 Tax=Wenyingzhuangia fucanilytica Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10445contigC-australica_Contig_10445:54..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog755731.Clo1100_3137
PFAMsCBM_6,Dockerin_1,Laminin_G_3
Model size384
Max annot lvl186801|Clostridia
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.64e-24
EggNOG OGsCOG3507@1|root,COG4733@1|root,COG3507@2|Bacteria,COG4733@2|Bacteria,1UYQE@1239|Firmicutes,24C16@186801|Clostridia,36EVP@31979|Clostridiaceae
DescriptionCellulose Binding Domain Type IV
Cds size372
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586781.026776-CDS-C-australica_Contig_10445:53..4251682586781.026776-CDS-C-australica_Contig_10445:53..425Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10445 54..425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586781.0378754-UTR-C-australica_Contig_10445:425..4371682586781.0378754-UTR-C-australica_Contig_10445:425..437Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10445 426..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10445.1.1prot_C-australica_Contig_10445.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10445 54..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10445.1.1

>prot_C-australica_Contig_10445.1.1 ID=prot_C-australica_Contig_10445.1.1|Name=mRNA_C-australica_Contig_10445.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=124bp
MRTSILIIFCFLATLPGAISQSDKTDIYVSPVGSDANPGTMELPLLTLKG
ARDHVRQIKALARGDVNVWFRRGEYFLNETVVFSLEDSGNDDLAITYSAY
PGEKPVFSSGKEIKGWEKVNNDLH
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mRNA from alignment at C-australica_Contig_10445:54..437-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10445.1.1 ID=mRNA_C-australica_Contig_10445.1.1|Name=mRNA_C-australica_Contig_10445.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=384bp|location=Sequence derived from alignment at C-australica_Contig_10445:54..437- (Chrysoparadoxa australica CS_1217)
ACGAACCTGGAAATGAGAACATCAATTTTAATTATTTTCTGTTTCCTGGC AACATTGCCAGGTGCTATAAGCCAAAGTGACAAGACAGACATATATGTTT CGCCTGTCGGAAGTGATGCTAACCCCGGAACAATGGAGTTACCATTGTTA ACTCTCAAGGGTGCGAGGGATCATGTTCGACAAATAAAAGCTTTGGCTAG GGGAGATGTGAATGTTTGGTTTCGGAGAGGAGAATATTTTCTAAATGAGA CTGTCGTATTCAGTTTGGAGGATTCTGGCAACGATGATTTAGCTATCACT TATTCAGCTTACCCCGGTGAAAAGCCGGTGTTTAGTTCTGGAAAGGAAAT TAAAGGCTGGGAAAAAGTAAACAATGATCTTCAC
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Coding sequence (CDS) from alignment at C-australica_Contig_10445:54..437-

>mRNA_C-australica_Contig_10445.1.1 ID=mRNA_C-australica_Contig_10445.1.1|Name=mRNA_C-australica_Contig_10445.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=372bp|location=Sequence derived from alignment at C-australica_Contig_10445:54..437- (Chrysoparadoxa australica CS_1217)
ATGAGAACATCAATTTTAATTATTTTCTGTTTCCTGGCAACATTGCCAGG
TGCTATAAGCCAAAGTGACAAGACAGACATATATGTTTCGCCTGTCGGAA
GTGATGCTAACCCCGGAACAATGGAGTTACCATTGTTAACTCTCAAGGGT
GCGAGGGATCATGTTCGACAAATAAAAGCTTTGGCTAGGGGAGATGTGAA
TGTTTGGTTTCGGAGAGGAGAATATTTTCTAAATGAGACTGTCGTATTCA
GTTTGGAGGATTCTGGCAACGATGATTTAGCTATCACTTATTCAGCTTAC
CCCGGTGAAAAGCCGGTGTTTAGTTCTGGAAAGGAAATTAAAGGCTGGGA
AAAAGTAAACAATGATCTTCAC
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