mRNA_C-australica_Contig_10428.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10428.1.1
Unique NamemRNA_C-australica_Contig_10428.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: A0A2E1LUD7_9PROT (Transcriptional repressor NrdR n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2E1LUD7_9PROT)

HSP 1 Score: 231 bits (590), Expect = 6.100e-74
Identity = 117/142 (82.39%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD 426
            TAVKDSRPAEDN+AVRRRRGCD CGARFTTFERVQLREI V+KRDGKRS+F+R+KL RSVSIALRKRPV+ E IDQ+VS +VR+LESSGE EM+SADIG+MVMESLR VDPVGYVRYASVY+DF DPSDFA FIEQ+AL+D+
Sbjct:   11 TAVKDSRPAEDNSAVRRRRGCDTCGARFTTFERVQLREIIVIKRDGKRSMFEREKLARSVSIALRKRPVTPEHIDQLVSAIVRQLESSGELEMASADIGEMVMESLRSVDPVGYVRYASVYRDFGDPSDFAQFIEQSALDDN 152
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: UPI0008D9945B (transcriptional regulator NrdR n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0008D9945B)

HSP 1 Score: 219 bits (557), Expect = 6.170e-69
Identity = 111/142 (78.17%), Postives = 126/142 (88.73%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD 426
            TAVKDSRPAEDN AVRRRRGCDNCGARFTTFERVQLREI V+KRDGKR  F R+KL R ++IALRKRPVS EQIDQIVSG+ RKLESSGE+E++S DIG++ MESLR VDPVGYVRYASVY+DF  PSDFA FI+Q+ L++D
Sbjct:   11 TAVKDSRPAEDNTAVRRRRGCDNCGARFTTFERVQLREIMVVKRDGKRVPFQREKLARVITIALRKRPVSTEQIDQIVSGIARKLESSGETEVASQDIGELAMESLRVVDPVGYVRYASVYRDFDAPSDFAAFIKQSELDED 152
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: A0A059FVT7_9PROT (Transcriptional repressor NrdR n=4 Tax=Hyphomonas TaxID=85 RepID=A0A059FVT7_9PROT)

HSP 1 Score: 214 bits (544), Expect = 6.790e-67
Identity = 105/142 (73.94%), Postives = 129/142 (90.85%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD 426
            TAVKDSR AED+  VRRRR C++CGARFTTFERVQLREI V+KRDGKRSVF+RDKL RS+SIA+RKRPV  ++IDQ+VSG+VRKLES GE E+ S+++G++VME+L+ VDPVGYVRYASVY+DF+DPSDFA FIE+TALE++
Sbjct:   11 TAVKDSRSAEDDTVVRRRRVCESCGARFTTFERVQLREIVVIKRDGKRSVFERDKLSRSISIAVRKRPVDRDRIDQMVSGIVRKLESGGEPEVQSSEVGELVMEALKRVDPVGYVRYASVYRDFKDPSDFAQFIEKTALEEE 152
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: A0A399RF13_9PROT (Transcriptional repressor NrdR n=2 Tax=Henriciella TaxID=453849 RepID=A0A399RF13_9PROT)

HSP 1 Score: 213 bits (543), Expect = 9.320e-67
Identity = 106/141 (75.18%), Postives = 127/141 (90.07%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALED 423
            TAVKDSRPAEDN AVRRRR C+ CG RFTTFERVQLREI V+KRDGKR++FDRDK+ +SV+IALRKR V  E ++++VSG+VRKLESSGE+E++SA+IG +VMESL+ VDPVGYVRYASVYKDF+DPSDFA FIE +AL+D
Sbjct:   11 TAVKDSRPAEDNTAVRRRRACEVCGGRFTTFERVQLREIIVVKRDGKRALFDRDKVAKSVTIALRKRAVGDESVERLVSGIVRKLESSGETEVTSAEIGDLVMESLKTVDPVGYVRYASVYKDFKDPSDFARFIETSALDD 151
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: A0A353YP27_9PROT (Transcriptional repressor NrdR n=11 Tax=root TaxID=1 RepID=A0A353YP27_9PROT)

HSP 1 Score: 213 bits (541), Expect = 1.870e-66
Identity = 105/142 (73.94%), Postives = 126/142 (88.73%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD 426
            T+VKDSR AEDN AVRRRR C++CGARFTTFERVQLREITV+KRDGKR  FDRD+L RS++IALRKRPV  +QIDQ+VSG+ R LES+GE+E+SS D+G+  ME+LR VDPVGYVR+ASVYKDF+DP+DFA FIE TAL+D+
Sbjct:   11 TSVKDSRSAEDNTAVRRRRVCESCGARFTTFERVQLREITVVKRDGKRVPFDRDRLTRSITIALRKRPVDRDQIDQMVSGIARNLESAGETEVSSNDVGEFAMEALRRVDPVGYVRFASVYKDFKDPNDFAQFIENTALDDE 152
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: UPI000A02BD18 (transcriptional regulator NrdR n=1 Tax=Henriciella pelagia TaxID=1977912 RepID=UPI000A02BD18)

HSP 1 Score: 212 bits (539), Expect = 3.760e-66
Identity = 104/141 (73.76%), Postives = 127/141 (90.07%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALED 423
            TAVKDSRPAEDN AVRRRR C+ CG RFTTFERVQLR+I V+KRDGKR++FDR+K+ +SV+IALRKR V  E ++Q+VSG+VRKLESSGE+E+SS DIG++VM++L+ VDPVGYVRYASVYK+F+DPSDFA FIE +ALED
Sbjct:   11 TAVKDSRPAEDNTAVRRRRACEVCGGRFTTFERVQLRDIIVVKRDGKRAIFDREKVAKSVTIALRKRAVGDESVEQLVSGIVRKLESSGETEVSSEDIGELVMDALKTVDPVGYVRYASVYKNFKDPSDFARFIESSALED 151
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: UPI000A02A495 (transcriptional regulator NrdR n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI000A02A495)

HSP 1 Score: 211 bits (538), Expect = 5.330e-66
Identity = 104/141 (73.76%), Postives = 127/141 (90.07%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALED 423
            TAVKDSRPAEDN AVRRRR C+ CG RFTTFERVQLREI V+KRDGKR+VFDR+K+ RSV IALRKRPV  E ++++VSG+VRKLESSGE+E+ S++IG++VME+L+ VDPVGYVRYASVYKDF+DPSDFA FIE ++L++
Sbjct:   11 TAVKDSRPAEDNTAVRRRRACEVCGGRFTTFERVQLREIIVVKRDGKRAVFDREKVARSVMIALRKRPVGDESVERLVSGIVRKLESSGETELLSSEIGELVMEALKTVDPVGYVRYASVYKDFKDPSDFAQFIETSSLDE 151
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: A0A069E1L4_9PROT (Transcriptional repressor NrdR n=8 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A069E1L4_9PROT)

HSP 1 Score: 211 bits (538), Expect = 5.690e-66
Identity = 104/142 (73.24%), Postives = 128/142 (90.14%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD 426
            T+VKDSR AED+ AVRRRR C++CGARFTTFERVQLRE+TV+KRDGKR  FDR++L +S++IALRKRPV  EQIDQ+VSG++RKLES+GE E++S D+G++ ME+LR VDPVGYVR+ASVYKDFRDPSDFA FIE+ ALED+
Sbjct:   11 TSVKDSRSAEDDTAVRRRRVCESCGARFTTFERVQLREVTVVKRDGKRVPFDRERLTKSITIALRKRPVDREQIDQMVSGILRKLESAGEPEVASNDVGELAMEALRMVDPVGYVRFASVYKDFRDPSDFAQFIEKAALEDE 152
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: NRDR_HYPNA (Transcriptional repressor NrdR n=3 Tax=Hyphomonas TaxID=85 RepID=NRDR_HYPNA)

HSP 1 Score: 211 bits (537), Expect = 8.340e-66
Identity = 104/142 (73.24%), Postives = 129/142 (90.85%), Query Frame = 1 
Query:    1 TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD 426
            T+VKDSR AED+ AVRRRR C++CGARFTTFERVQLREI V+KRDGKRS+FDR+KL RS+ IALRKRPV  ++IDQ+VSG+VRKLES GE+E+ S+++G++VME+L+ VDPVGYVRYASVY+DF+DPSDFA FIE+ ALED+
Sbjct:   11 TSVKDSRAAEDDTAVRRRRVCESCGARFTTFERVQLREIIVVKRDGKRSLFDREKLQRSILIALRKRPVDRDRIDQMVSGIVRKLESGGETEVPSSEVGELVMEALKRVDPVGYVRYASVYRDFKDPSDFAQFIEKAALEDE 152
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BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Match: A0A059ED16_9PROT (Transcriptional repressor NrdR n=2 Tax=Hyphomonas sp. L-53-1-40 TaxID=1207058 RepID=A0A059ED16_9PROT)

HSP 1 Score: 209 bits (531), Expect = 4.130e-65
Identity = 104/140 (74.29%), Postives = 123/140 (87.86%), Query Frame = 1 
Query:    7 VKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSVFDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQMVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD 426
            +KDSR AEDN AVRRRR C+ CGARFTTFERVQLREI V+KRDGKR  FDRD+L RS++IALRKRPV  EQIDQ+VSG+ RKLES GE+E++S ++G+  ME+LR VDPVGYVR+ASVYKDFRDP+DFA FIEQT+LED+
Sbjct:    1 MKDSRSAEDNTAVRRRRVCEACGARFTTFERVQLREIMVVKRDGKRVPFDRDRLTRSITIALRKRPVDREQIDQMVSGIARKLESGGETEVTSNEVGEFAMEALRQVDPVGYVRFASVYKDFRDPNDFAQFIEQTSLEDE 140
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10428.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E1LUD7_9PROT6.100e-7482.39Transcriptional repressor NrdR n=2 Tax=Hyphomonada... [more]
UPI0008D9945B6.170e-6978.17transcriptional regulator NrdR n=1 Tax=Hyphomonas ... [more]
A0A059FVT7_9PROT6.790e-6773.94Transcriptional repressor NrdR n=4 Tax=Hyphomonas ... [more]
A0A399RF13_9PROT9.320e-6775.18Transcriptional repressor NrdR n=2 Tax=Henriciella... [more]
A0A353YP27_9PROT1.870e-6673.94Transcriptional repressor NrdR n=11 Tax=root TaxID... [more]
UPI000A02BD183.760e-6673.76transcriptional regulator NrdR n=1 Tax=Henriciella... [more]
UPI000A02A4955.330e-6673.76transcriptional regulator NrdR n=1 Tax=Henriciella... [more]
A0A069E1L4_9PROT5.690e-6673.24Transcriptional repressor NrdR n=8 Tax=Hyphomonada... [more]
NRDR_HYPNA8.340e-6673.24Transcriptional repressor NrdR n=3 Tax=Hyphomonas ... [more]
A0A059ED16_9PROT4.130e-6574.29Transcriptional repressor NrdR n=2 Tax=Hyphomonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10428contigC-australica_Contig_10428:3..820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1280947.HY30_09030
Preferred namenrdR
PFAMsATP-cone
Model size818
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07738
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-69
EggNOG OGsCOG1327@1|root,COG1327@2|Bacteria,1RE7V@1224|Proteobacteria,2U75W@28211|Alphaproteobacteria,43XYB@69657|Hyphomonadaceae
DescriptionNegatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Cds size429
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586779.701558-CDS-C-australica_Contig_10428:2..4311682586779.701558-CDS-C-australica_Contig_10428:2..431Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10428 3..431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586779.7169588-UTR-C-australica_Contig_10428:431..8201682586779.7169588-UTR-C-australica_Contig_10428:431..820Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10428 432..820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10428.1.1prot_C-australica_Contig_10428.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10428 3..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10428.1.1

>prot_C-australica_Contig_10428.1.1 ID=prot_C-australica_Contig_10428.1.1|Name=mRNA_C-australica_Contig_10428.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=143bp
TAVKDSRPAEDNNAVRRRRGCDNCGARFTTFERVQLREITVLKRDGKRSV
FDRDKLVRSVSIALRKRPVSVEQIDQIVSGMVRKLESSGESEMSSADIGQ
MVMESLRGVDPVGYVRYASVYKDFRDPSDFAHFIEQTALEDD*
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mRNA from alignment at C-australica_Contig_10428:3..820+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10428.1.1 ID=mRNA_C-australica_Contig_10428.1.1|Name=mRNA_C-australica_Contig_10428.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=818bp|location=Sequence derived from alignment at C-australica_Contig_10428:3..820+ (Chrysoparadoxa australica CS_1217)
ACAGCCGTTAAGGACAGCCGTCCGGCCGAGGACAATAACGCTGTGCGTCG
TCGTCGCGGCTGCGATAATTGCGGTGCCAGGTTCACCACATTTGAACGCG
TGCAATTACGTGAGATCACCGTTCTGAAGCGTGATGGTAAGCGGTCTGTA
TTCGACCGGGACAAGCTGGTGCGGTCAGTTTCCATTGCTTTGCGTAAACG
ACCTGTATCAGTCGAGCAAATTGATCAGATTGTTTCCGGTATGGTGCGAA
AGCTTGAGAGTAGCGGCGAGAGCGAAATGTCGTCTGCAGATATTGGTCAA
ATGGTGATGGAAAGCCTACGCGGTGTCGATCCGGTTGGCTATGTTCGTTA
TGCCAGTGTGTATAAGGATTTTCGTGATCCCTCCGATTTTGCCCATTTTA
TCGAGCAAACCGCGTTGGAAGACGATTAATGGCGAGGCCAAGCGTTACCT
TAAAAATTGCGACCAGCATGGATGGCCGAATTGCCCTGGCAAATGGGGTT
AGTCAGTGGATTACCTGCAGCCAATCACGGGCGCGTGTGCATGAGATGCG
CCGTGATCATTCGGCTGTCCTGGTTGGCTCTGGAACCGTACTTGCGGATG
ATCCGCTGCTCACGGCGCGAACCGTACCAATACCATCTCATCAGCCAGTT
CGGATTGTTGCCGATAGTCAGGCGCGCACCCCTGTTTCCGGGCGATTGAT
CCAATCTGCAAGTCTCGGAAAAGTGGTGATCGCAGCGGCCCAGCCCGATG
GCCACGCTGTCTCCGCGCTTGAAGAAGCTGGCGCTGAGGTTTGGCTCTGC
GGCGGCACAGATGGGCAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10428:3..820+

>mRNA_C-australica_Contig_10428.1.1 ID=mRNA_C-australica_Contig_10428.1.1|Name=mRNA_C-australica_Contig_10428.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=429bp|location=Sequence derived from alignment at C-australica_Contig_10428:3..820+ (Chrysoparadoxa australica CS_1217)
ACAGCCGTTAAGGACAGCCGTCCGGCCGAGGACAATAACGCTGTGCGTCG
TCGTCGCGGCTGCGATAATTGCGGTGCCAGGTTCACCACATTTGAACGCG
TGCAATTACGTGAGATCACCGTTCTGAAGCGTGATGGTAAGCGGTCTGTA
TTCGACCGGGACAAGCTGGTGCGGTCAGTTTCCATTGCTTTGCGTAAACG
ACCTGTATCAGTCGAGCAAATTGATCAGATTGTTTCCGGTATGGTGCGAA
AGCTTGAGAGTAGCGGCGAGAGCGAAATGTCGTCTGCAGATATTGGTCAA
ATGGTGATGGAAAGCCTACGCGGTGTCGATCCGGTTGGCTATGTTCGTTA
TGCCAGTGTGTATAAGGATTTTCGTGATCCCTCCGATTTTGCCCATTTTA
TCGAGCAAACCGCGTTGGAAGACGATTAA
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