mRNA_C-australica_Contig_10395.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10395.1.1
Unique NamemRNA_C-australica_Contig_10395.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: A0A222E6A2_9RHOB (NADH dehydrogenase subunit E n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E6A2_9RHOB)

HSP 1 Score: 253 bits (646), Expect = 4.020e-85
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRLFLTPILCLTLATPVWAKTPL+QVSEIDDGLMAIAIADEIRKNC+DISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR
Sbjct:    1 MRLFLTPILCLTLATPVWAKTPLNQVSEIDDGLMAIAIADEIRKNCNDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: A0A0B3S6N0_9RHOB (Uncharacterized protein n=2 Tax=Mameliella TaxID=1434019 RepID=A0A0B3S6N0_9RHOB)

HSP 1 Score: 201 bits (512), Expect = 1.090e-64
Identity = 101/130 (77.69%), Postives = 111/130 (85.38%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL LT I+C+TLA P  AK PL +VSEIDDGLMAIAIADEIRKNCDD+  RM+RAYRQI+ALEKRAKALGYS+ EID YV S  EKKRMR KAETWLASKGV   D +ALCKFGRDDI+RGGPVG+FLR
Sbjct:    1 MRLILTSIVCMTLALPAVAKPPLREVSEIDDGLMAIAIADEIRKNCDDLQPRMVRAYRQIKALEKRAKALGYSETEIDDYVKSDKEKKRMRGKAETWLASKGVNPKDTRALCKFGRDDISRGGPVGYFLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: UPI001C450967 (DUF5333 family protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C450967)

HSP 1 Score: 197 bits (502), Expect = 3.630e-63
Identity = 98/130 (75.38%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL LT  LCLT A P  AK PLS+V EIDDGLMAIAIAD+IRK CD+I+ RM+RAYRQI+ALE RAKALGYS++EID YV+S AEKKRMRKKAE+WLA++GV A D+ ALC+FGRDDIARGGP+GFFLR
Sbjct:    1 MRLILTSALCLTFALPAAAKPPLSEVREIDDGLMAIAIADDIRKRCDEINPRMVRAYRQIKALESRAKALGYSEEEIDRYVSSDAEKKRMRKKAESWLATQGVNAKDKGALCQFGRDDIARGGPIGFFLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: A0A238K1G4_9RHOB (Uncharacterized protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K1G4_9RHOB)

HSP 1 Score: 196 bits (497), Expect = 2.100e-62
Identity = 101/130 (77.69%), Postives = 111/130 (85.38%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL LT  LCL LA P  AK PL +VSEIDDGLMAIAIADEIRK CDDI+ARMIRA  QI+ LEKRAKALGYSDDEID YVNSSAEKKRMR+KAE +LA++GV A D+KALC++GRD IA GGPVGFFLR
Sbjct:    1 MRLILTSFLCLCLALPASAKPPLREVSEIDDGLMAIAIADEIRKTCDDINARMIRALSQIKELEKRAKALGYSDDEIDDYVNSSAEKKRMRQKAEAYLAAQGVNAKDKKALCRYGRDQIASGGPVGFFLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: A0A0W7WET1_9RHOB (Uncharacterized protein n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WET1_9RHOB)

HSP 1 Score: 154 bits (390), Expect = 4.110e-46
Identity = 83/130 (63.85%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL     L + LA P  AK PLSQV  IDD LMAIAIADEIRK CD I+ARMIRA  +I +L   AKALGY++DEID Y +S AEKKRMR KAE +LAS+GV A DE ALC+FGRD+IAR   +G  LR
Sbjct:    1 MRLIPALALLIALAAPAAAKPPLSQVRAIDDALMAIAIADEIRKTCDGINARMIRAMSRINSLRAEAKALGYTNDEIDAYTSSKAEKKRMRSKAEAYLASQGVDARDEAALCRFGRDEIARNTAIGSLLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: A0A7W6DX09_9RHOB (Uncharacterized protein n=1 Tax=Sagittula marina TaxID=943940 RepID=A0A7W6DX09_9RHOB)

HSP 1 Score: 152 bits (384), Expect = 3.360e-45
Identity = 79/130 (60.77%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL     LCL LA P +AK  L +V EIDD LM IAIADEIRK CDDI+ARMIRA+ Q+  LE RAK+LGYS DEID YV+S +EK+RMR+KA  WLA++GV A D+KALC FG+  I +   +G  LR
Sbjct:    1 MRLIPVLTLCLALAAPAFAKPHLREVPEIDDTLMQIAIADEIRKTCDDINARMIRAFAQVTQLESRAKSLGYSSDEIDDYVSSKSEKRRMREKASGWLAAQGVKADDDKALCAFGKAQIKKDTYIGSLLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: X6L4C1_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6L4C1_9RHOB)

HSP 1 Score: 146 bits (369), Expect = 6.430e-43
Identity = 77/130 (59.23%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL    ++    A    AK PL  V +ID+GLMAIAIADEIRK CD I  R+IRA  Q+  L+  AK +GYS+DEID YV S AEK+RMRKKAE +L+S+GV A D  ALC +G+ DIARGGPVG FLR
Sbjct:    1 MRLIPAALILAMTAVQAQAKPPLRDVPQIDNGLMAIAIADEIRKKCDGIEPRLIRAMSQLNTLKGMAKDMGYSNDEIDDYVTSKAEKERMRKKAEAYLSSQGVNAKDRAALCAYGKADIARGGPVGSFLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: A0A8J7WB39_9RHOB (DUF5333 domain-containing protein n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J7WB39_9RHOB)

HSP 1 Score: 142 bits (359), Expect = 2.130e-41
Identity = 76/130 (58.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL  T +LC  LA P  AK PL  V+EID+ LMAIAIADEIRK CD I+AR+I AY  I AL+ RA++LGY++DEID YV S +EK RMR KA  +LASKGV A D+  LC FG+ +IA    +G  LR
Sbjct:    1 MRLVPTVLLCAALALPAAAKPPLRDVAEIDNALMAIAIADEIRKTCDGINARLILAYTTINALKSRAESLGYTEDEIDAYVTSKSEKDRMRAKATAYLASKGVDAKDKGELCAFGKAEIASDSAIGRLLR 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: A0A0P1GF53_9RHOB (Uncharacterized protein n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GF53_9RHOB)

HSP 1 Score: 142 bits (359), Expect = 2.130e-41
Identity = 74/130 (56.92%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFLR 390
            MRL  T +LC+ LA P +AK PL  V++ID+GLMAIAIADEIRK CD I AR+  A  +I  L  +AKALGYS+ EID Y  S +EK RMR KAE++LASKGV A +   LC FGR +IA+G  +G  L+
Sbjct:    1 MRLIPTAVLCVALAAPAFAKVPLRDVADIDNGLMAIAIADEIRKECDGIDARLFTALGRINDLRNKAKALGYSNAEIDAYTKSKSEKDRMRAKAESYLASKGVDADNRDQLCAFGRAEIAKGTNIGSLLK 130          
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Match: UPI001C388D83 (DUF5333 family protein n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C388D83)

HSP 1 Score: 142 bits (358), Expect = 3.420e-41
Identity = 73/127 (57.48%), Postives = 93/127 (73.23%), Query Frame = 1
Query:    7 LFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDISARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLASKGVAASDEKALCKFGRDDIARGGPVGFFL 387
            L L  +L LTLA P  AK PL  V++IDD LMA+AIADEIRK+C+DIS RMI+AY  +++L+  A+ALGYSD+EI+ YV S AEK RMR KA+ WL ++GV   D  ALC FG+ +IARG  +G  L
Sbjct:    7 LVLPLVLGLTLAAPAAAKPPLRDVAKIDDHLMAVAIADEIRKSCEDISPRMIKAYSVLRSLKSDARALGYSDEEIEDYVTSKAEKARMRAKADAWLKARGVDPKDRAALCAFGKTEIARGSRIGELL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10395.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E6A2_9RHOB4.020e-8598.46NADH dehydrogenase subunit E n=3 Tax=Roseobacterac... [more]
A0A0B3S6N0_9RHOB1.090e-6477.69Uncharacterized protein n=2 Tax=Mameliella TaxID=1... [more]
UPI001C4509673.630e-6375.38DUF5333 family protein n=2 Tax=Rhodobacterales Tax... [more]
A0A238K1G4_9RHOB2.100e-6277.69Uncharacterized protein n=1 Tax=Maliponia aquimari... [more]
A0A0W7WET1_9RHOB4.110e-4663.85Uncharacterized protein n=1 Tax=Ponticoccus marisr... [more]
A0A7W6DX09_9RHOB3.360e-4560.77Uncharacterized protein n=1 Tax=Sagittula marina T... [more]
X6L4C1_9RHOB6.430e-4359.23Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]
A0A8J7WB39_9RHOB2.130e-4158.46DUF5333 domain-containing protein n=1 Tax=Aestuari... [more]
A0A0P1GF53_9RHOB2.130e-4156.92Uncharacterized protein n=1 Tax=Tropicibacter naph... [more]
UPI001C388D833.420e-4157.48DUF5333 family protein n=1 Tax=Thalassococcus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10395contigC-australica_Contig_10395:370..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1449351.RISW2_23375
PFAMsDUF5333
Model size393
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.9e-41
EggNOG OGs2E5WE@1|root,330KF@2|Bacteria,1N9NQ@1224|Proteobacteria,2UHY3@28211|Alphaproteobacteria,4KMZN@93682|Roseivivax
DescriptionFamily of unknown function (DUF5333)
Cds size393
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.1469164-CDS-C-australica_Contig_10395:369..7621682586776.1469164-CDS-C-australica_Contig_10395:369..762Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10395 370..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10395.1.1prot_C-australica_Contig_10395.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10395 370..762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10395.1.1

>prot_C-australica_Contig_10395.1.1 ID=prot_C-australica_Contig_10395.1.1|Name=mRNA_C-australica_Contig_10395.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=131bp
MRLFLTPILCLTLATPVWAKTPLSQVSEIDDGLMAIAIADEIRKNCDDIS
ARMIRAYRQIQALEKRAKALGYSDDEIDTYVNSSAEKKRMRKKAETWLAS
KGVAASDEKALCKFGRDDIARGGPVGFFLR*
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mRNA from alignment at C-australica_Contig_10395:370..762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10395.1.1 ID=mRNA_C-australica_Contig_10395.1.1|Name=mRNA_C-australica_Contig_10395.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=393bp|location=Sequence derived from alignment at C-australica_Contig_10395:370..762- (Chrysoparadoxa australica CS_1217)
ATGCGTCTGTTTCTTACCCCGATCCTCTGCCTGACCCTTGCCACGCCGGT CTGGGCAAAGACACCACTCAGCCAAGTGTCAGAAATTGATGACGGCCTGA TGGCGATCGCCATCGCCGACGAGATTCGGAAGAACTGCGATGACATCAGT GCACGGATGATTCGGGCTTATCGCCAGATTCAGGCGCTGGAAAAGCGTGC AAAGGCGTTGGGCTATTCCGACGATGAGATTGACACCTACGTCAACTCGT CTGCCGAAAAGAAGCGGATGCGCAAGAAGGCGGAAACCTGGTTGGCCTCA AAGGGCGTCGCCGCGTCCGATGAAAAGGCGCTTTGCAAGTTTGGTCGGGA CGACATCGCCCGCGGTGGGCCGGTGGGTTTCTTCCTGCGCTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10395:370..762-

>mRNA_C-australica_Contig_10395.1.1 ID=mRNA_C-australica_Contig_10395.1.1|Name=mRNA_C-australica_Contig_10395.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=393bp|location=Sequence derived from alignment at C-australica_Contig_10395:370..762- (Chrysoparadoxa australica CS_1217)
ATGCGTCTGTTTCTTACCCCGATCCTCTGCCTGACCCTTGCCACGCCGGT
CTGGGCAAAGACACCACTCAGCCAAGTGTCAGAAATTGATGACGGCCTGA
TGGCGATCGCCATCGCCGACGAGATTCGGAAGAACTGCGATGACATCAGT
GCACGGATGATTCGGGCTTATCGCCAGATTCAGGCGCTGGAAAAGCGTGC
AAAGGCGTTGGGCTATTCCGACGATGAGATTGACACCTACGTCAACTCGT
CTGCCGAAAAGAAGCGGATGCGCAAGAAGGCGGAAACCTGGTTGGCCTCA
AAGGGCGTCGCCGCGTCCGATGAAAAGGCGCTTTGCAAGTTTGGTCGGGA
CGACATCGCCCGCGGTGGGCCGGTGGGTTTCTTCCTGCGCTGA
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