mRNA_C-australica_Contig_10393.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10393.1.1
Unique NamemRNA_C-australica_Contig_10393.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: A0A2E6H2W5_9PROT (Uncharacterized protein n=1 Tax=Halobacteriovorax sp. TaxID=2020862 RepID=A0A2E6H2W5_9PROT)

HSP 1 Score: 135 bits (341), Expect = 3.310e-38
Identity = 65/136 (47.79%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   28 VSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSDEGQIHFRSASRSGYSDLGVNKKRMSQISFYFYQNN 435
            VSC AP P  LGV + +    L KCP+ PNC+ S F  D++H+L P++    KE A + +  ++ ++ SAKIIT   +YIHAE+TS++ +F+DDVEF    + ++HFRSASR G+SDLG NKKR+  I F F QN+
Sbjct:   14 VSCSAPMPKGLGVIDNQ----LSKCPDKPNCVTS-FKHDEEHFLEPIEIVSNKERAHQKITGILTKNSSAKIITTSPDYIHAEFTSAIFRFIDDVEFYFGIDKKVHFRSASRKGHSDLGANKKRIEDIRFKFQQND 144          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: A0A2H0Q8X1_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrionales bacterium CG11_big_fil_rev_8_21_14_0_20_38_13 TaxID=1973928 RepID=A0A2H0Q8X1_9PROT)

HSP 1 Score: 134 bits (338), Expect = 1.660e-37
Identity = 67/142 (47.18%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   10 LLVLVLVSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSDEGQIHFRSASRSGYSDLGVNKKRMSQISFYFYQNN 435
            LL+L+L SCQ   PTNLGV + +    L+ CP+ PNC+ S+   ++ +++ P+K + E    ++ +L ++ +DKSAKI+  ++ Y+ AEYTS+L KFVDDVEF   + G +HFRSASR GYSDLG NK R+  I F F+QN+
Sbjct:   26 LLLLLLTSCQGTPPTNLGVHDNK----LRPCPDKPNCVVSYDFGEQKNFIEPIKSEEEPGRIKEKILGIVSKDKSAKIVEQNDTYLRAEYTSNLFKFVDDVEFWFGETGVVHFRSASRLGYSDLGANKDRIETIRFKFHQND 163          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: A0A2N1RQF4_9SPIR (DUF1499 domain-containing protein n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-5 TaxID=2013837 RepID=A0A2N1RQF4_9SPIR)

HSP 1 Score: 120 bits (302), Expect = 3.020e-32
Identity = 64/142 (45.07%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 LLSLLVLVLVSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSDEGQ-IHFRSASRSGYSDLGVNKKRMSQISFYF 423
            L+SL  +  +SC    P ++GV +  GK  L  CP+ PNC++S   EDK H++ P  +    E A+  LLE +K     KII++ +NYIHAEYTS + +FVDDVEF + D+ + +H RSASR GYSD+GVN KR+  +   F
Sbjct:    8 LISLATVFAISCSGKTPGSIGVKD--GK--LAACPDKPNCVSS-MTEDKSHFIEPFTYSGSSEKAKSALLEAVKSQDRTKIISDSDNYIHAEYTSRIFRFVDDVEFLIDDKSKTVHVRSASRLGYSDMGVNGKRIESLRIIF 144          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: A0A1G3QMV6_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium RBG_16_49_21 TaxID=1802195 RepID=A0A1G3QMV6_9SPIR)

HSP 1 Score: 119 bits (298), Expect = 1.320e-31
Identity = 66/133 (49.62%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   31 SCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFP-EDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSDEGQI-HFRSASRSGYSDLGVNKKRMSQISFYF 423
            SC   RP+NLGV +      L  CP SPNC++S     DK HY+ P K+      A++ L+EVI+  K AKII N +NYI AEY S+L +FVDDVEF   D  +I H RSASR GY D+GVN+KR+ +I   F
Sbjct:   22 SCSGTRPSNLGVKD----GALNLCPGSPNCVSSQAAASDKVHYIEPFKYAGSSSGAKERLVEVIESMKRAKIIINKDNYIDAEYASALFRFVDDVEFYFDDAKRIIHVRSASRVGYGDMGVNRKRVERIRTLF 150          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: UPI0019FC6190 (DUF1499 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019FC6190)

HSP 1 Score: 116 bits (290), Expect = 2.020e-30
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   19 LVLVSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSDEGQIHFRSASRSGYSDLGVNKKRMSQISFYF 423
            ++++SC   RP N+G+    G+  L  CP  PNC++S    D+DH +APL++Q EK AA K L ++++  + + I+   ENY+H E  S+++ FVDDVEF    E  IH RSASR GY DLGVN+KR+ QI   F
Sbjct:   12 MMIISCAGQRPANIGIHN--GR--LTDCPSKPNCVSSQAA-DEDHAVAPLRYQGEKVAAFKRLKKIVESSERSTIVAESENYLHIECKSAIMGFVDDVEFYFPKEKVIHVRSASRLGYFDLGVNRKRVEQIRKLF 141          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: A0A3A4SIY2_9DELT (DUF1499 domain-containing protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4SIY2_9DELT)

HSP 1 Score: 115 bits (288), Expect = 2.640e-30
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   91 LQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSD-EGQIHFRSASRSGYSDLGVNKKRMSQISFYFYQ 429
            L  CP+SPNC++S F  D  HY+ PL+++  K  AR+ LL ++   K  K++T++E YIHAE+TS + +FVDDVEF L + E  IH RSASR GYSDLG N+KR+ +I   F Q
Sbjct:   23 LLPCPDSPNCVSS-FETDSAHYVEPLRYEGSKADARQKLLSILNTTKRVKVVTSEETYIHAEFTSLIFRFVDDVEFYLDEKEPVIHVRSASRVGYSDLGANRKRVEEIRRQFIQ 135          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: V6HJ00_9LEPT (PF07386 family protein n=3 Tax=Leptospira TaxID=171 RepID=V6HJ00_9LEPT)

HSP 1 Score: 115 bits (288), Expect = 4.060e-30
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   34 CQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPE-DKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLS-DEGQIHFRSASRSGYSDLGVNKKRMSQISFYF 423
            C   RPTN+GV +  GK  L  CP SPNC++S  P  D+ H ++PL +Q + E A+K L+EVI+     +I+T   +YI+AE+TS  +++VDDVEF  + D+  IH RSASR GYSD+GVN+KR+  I   F
Sbjct:   21 CSGTRPTNIGVKD--GK--LLACPNSPNCVSSQIPPTDEKHSISPLVYQSKSEEAKKKLVEVIRSLPRTEIVTEKNDYIYAEFTSFTMRYVDDVEFFFAPDQKTIHVRSASRLGYSDMGVNRKRIETIRELF 148          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: A0A848ZI13_9DELT (DUF1499 domain-containing protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A848ZI13_9DELT)

HSP 1 Score: 112 bits (281), Expect = 3.390e-29
Identity = 61/134 (45.52%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   13 LVLVLVSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSDEGQ-IHFRSASRSGYSDLGVNKKRMSQI 411
            L  +L +C A + T  G  +      L  CP+SPNC++S   EDK HY+ PL + + ++ AR+ L+ VI   K ++I+T + NYIHA + S L +FVDDVEF+  D+ + I  RSASR+GYSDLGVN+KR+ +I
Sbjct:    4 LTFILTACSANQTTKTGGTDDN----LSPCPKSPNCVSS-LSEDKSHYVEPLSYGVSQKEAREKLISVINSMKRSEIVTAEINYIHATFKSGLFRFVDDVEFSFDDQKKVIDVRSASRTGYSDLGVNRKRVEEI 132          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: UPI001E36A2C7 (DUF1499 domain-containing protein n=3 Tax=Oleiphilus TaxID=141450 RepID=UPI001E36A2C7)

HSP 1 Score: 114 bits (284), Expect = 3.450e-29
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   19 LVLVSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSDEGQ-IHFRSASRSGYSDLGVNKKRMSQI 411
            L+L +C   RP  LG    E +  LQ CP SPNC++S   EDKDH++  + +   K +  + L++ I  D+SA++I   + YI+AEYTS+++++VDDVEF   D  Q IH RSASR G+SD GVN+ R+ QI
Sbjct:   42 LILSACTGTRPKQLG----EAQTSLQVCPSSPNCVSSLKDEDKDHFIESISYT-NKSSTHEALVKAINSDESAELIIKTDQYIYAEYTSAIMRYVDDVEFLFDDNQQRIHVRSASRLGHSDFGVNRDRIEQI 168          
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Match: A0A524PXM3_9BACT (DUF1499 domain-containing protein n=1 Tax=Chrysiogenales bacterium TaxID=2528039 RepID=A0A524PXM3_9BACT)

HSP 1 Score: 112 bits (280), Expect = 6.030e-29
Identity = 61/138 (44.20%), Postives = 90/138 (65.22%), Query Frame = 1
Query:   13 LVLVLVSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKDHYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKFVDDVEFNLSD-EGQIHFRSASRSGYSDLGVNKKRMSQISFYF 423
            L+ V  SC   RP+N+G   V+G+  L+ CPESPNC++S   E   H++ P+++  +   AR+ LL +++  K A ++T +E Y+ AEY S+L +FVDDVEF   D +  IH RSASR GY D+GVN+KR+ +I   F
Sbjct:   12 LMTVFFSCSGRRPSNIGA--VDGR--LRPCPESPNCVSSQA-EGVGHFIDPIRYSGDLAGAREKLLRIVRSMKRATVVTEEEGYLCAEYRSALFRFVDDVEFLFDDAKKMIHVRSASRVGYGDMGVNRKRIEKIRELF 144          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10393.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6H2W5_9PROT3.310e-3847.79Uncharacterized protein n=1 Tax=Halobacteriovorax ... [more]
A0A2H0Q8X1_9PROT1.660e-3747.18Uncharacterized protein n=1 Tax=Bdellovibrionales ... [more]
A0A2N1RQF4_9SPIR3.020e-3245.07DUF1499 domain-containing protein n=1 Tax=Spirocha... [more]
A0A1G3QMV6_9SPIR1.320e-3149.62Uncharacterized protein n=1 Tax=Spirochaetes bacte... [more]
UPI0019FC61902.020e-3045.19DUF1499 domain-containing protein n=1 Tax=Proteoba... [more]
A0A3A4SIY2_9DELT2.640e-3050.88DUF1499 domain-containing protein n=1 Tax=Desulfob... [more]
V6HJ00_9LEPT4.060e-3047.73PF07386 family protein n=3 Tax=Leptospira TaxID=17... [more]
A0A848ZI13_9DELT3.390e-2945.52DUF1499 domain-containing protein n=1 Tax=Desulfob... [more]
UPI001E36A2C73.450e-2945.45DUF1499 domain-containing protein n=3 Tax=Oleiphil... [more]
A0A524PXM3_9BACT6.030e-2944.20DUF1499 domain-containing protein n=1 Tax=Chrysiog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10393contigC-australica_Contig_10393:3..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400668.Mmwyl1_1554
PFAMsDUF1499
Model size441
Max annot lvl135619|Oceanospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.34e-28
EggNOG OGsCOG4446@1|root,COG4446@2|Bacteria,1N7IZ@1224|Proteobacteria,1SCZH@1236|Gammaproteobacteria,1XM4P@135619|Oceanospirillales
Descriptionprotein conserved in bacteria
Cds size441
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586776.0363166-CDS-C-australica_Contig_10393:2..4431682586776.0363166-CDS-C-australica_Contig_10393:2..443Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10393 3..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10393.1.1prot_C-australica_Contig_10393.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10393 3..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10393.1.1

>prot_C-australica_Contig_10393.1.1 ID=prot_C-australica_Contig_10393.1.1|Name=mRNA_C-australica_Contig_10393.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=147bp
LLSLLVLVLVSCQAPRPTNLGVFEVEGKKILQKCPESPNCINSHFPEDKD
HYLAPLKFQMEKEAARKLLLEVIKRDKSAKIITNDENYIHAEYTSSLLKF
VDDVEFNLSDEGQIHFRSASRSGYSDLGVNKKRMSQISFYFYQNNM*
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mRNA from alignment at C-australica_Contig_10393:3..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10393.1.1 ID=mRNA_C-australica_Contig_10393.1.1|Name=mRNA_C-australica_Contig_10393.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=441bp|location=Sequence derived from alignment at C-australica_Contig_10393:3..443+ (Chrysoparadoxa australica CS_1217)
CTTCTCTCCCTTCTCGTATTAGTTTTAGTATCTTGTCAGGCACCTCGCCC GACTAACCTCGGTGTTTTTGAAGTTGAAGGTAAGAAGATCCTCCAAAAAT GTCCGGAGTCTCCAAATTGCATCAATAGTCACTTTCCCGAAGACAAAGAT CACTATCTCGCTCCACTTAAATTTCAAATGGAAAAAGAGGCTGCTAGAAA GCTTCTCTTGGAAGTTATAAAGAGAGATAAAAGCGCGAAGATTATCACCA ACGACGAAAACTATATTCATGCAGAATACACCAGTAGCCTGTTAAAATTT GTTGATGATGTAGAGTTCAACTTATCGGACGAAGGACAGATTCATTTTCG CAGCGCTTCAAGAAGCGGATATAGTGACCTAGGGGTCAATAAGAAGCGAA TGAGTCAAATTTCCTTTTACTTCTATCAAAATAATATGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10393:3..443+

>mRNA_C-australica_Contig_10393.1.1 ID=mRNA_C-australica_Contig_10393.1.1|Name=mRNA_C-australica_Contig_10393.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=441bp|location=Sequence derived from alignment at C-australica_Contig_10393:3..443+ (Chrysoparadoxa australica CS_1217)
CTTCTCTCCCTTCTCGTATTAGTTTTAGTATCTTGTCAGGCACCTCGCCC
GACTAACCTCGGTGTTTTTGAAGTTGAAGGTAAGAAGATCCTCCAAAAAT
GTCCGGAGTCTCCAAATTGCATCAATAGTCACTTTCCCGAAGACAAAGAT
CACTATCTCGCTCCACTTAAATTTCAAATGGAAAAAGAGGCTGCTAGAAA
GCTTCTCTTGGAAGTTATAAAGAGAGATAAAAGCGCGAAGATTATCACCA
ACGACGAAAACTATATTCATGCAGAATACACCAGTAGCCTGTTAAAATTT
GTTGATGATGTAGAGTTCAACTTATCGGACGAAGGACAGATTCATTTTCG
CAGCGCTTCAAGAAGCGGATATAGTGACCTAGGGGTCAATAAGAAGCGAA
TGAGTCAAATTTCCTTTTACTTCTATCAAAATAATATGTAA
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