mRNA_C-australica_Contig_1038.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1038.7.1
Unique NamemRNA_C-australica_Contig_1038.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: D7FW88_ECTSI (40S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW88_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 8.320e-31
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:   22 SSQDLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKADD 237
            S+ DLY+PRKCSWTNRLL A DH+S Q+NVG +DPVSGTFTG+SDVYALAG++R  GEADEAL  LVNK D+
Sbjct:    7 SNVDLYIPRKCSWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDE 78
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: A0A7S0FIC7_9STRA (40S ribosomal protein S21 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIC7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.170e-25
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   31 DLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKADD 237
            DLY+PRKCSWTNRLL +GDH SVQ+NVGNVDPV+G FTG+S  +A++G+VR   EAD AL AL  KA+D
Sbjct:   10 DLYVPRKCSWTNRLLTSGDHGSVQINVGNVDPVTGLFTGESTPFAISGYVRAKSEADMALTALA-KAND 77
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: A0A835Z072_9STRA (40S ribosomal protein S21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z072_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.230e-24
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:   31 DLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKAD 234
            DLY+PRKCSWTNRLL+A DHASVQ+NV  +DP +G  TG  +V+ALAGF+RR+G++D AL AL ++ D
Sbjct:   10 DLYVPRKCSWTNRLLVAKDHASVQINVAKIDPQTGVATGAHEVFALAGFLRRLGQSDNALAALSSQKD 77
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: B8BZU9_THAPS (40S ribosomal protein S21 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZU9_THAPS)

HSP 1 Score: 93.2 bits (230), Expect = 3.760e-23
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   31 DLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKADDR 240
            DLY+PRKCSWTNRL+ A DH SVQ+NV NVDPV+G FTG+S  YA+AG++R   E D A  ALV   D +
Sbjct:   10 DLYIPRKCSWTNRLIRAKDHGSVQINVANVDPVTGLFTGESTAYAMAGYIRDKSEGDMAFTALVEANDKK 79
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: A0A812Q5U2_9DINO (40S ribosomal protein S21 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q5U2_9DINO)

HSP 1 Score: 92.8 bits (229), Expect = 4.650e-23
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   31 DLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKAD 234
            DLY+PRKCSWTNRL+ A DHASVQ+NV ++DP +G + G    YAL GF+R  GEAD AL  LV KAD
Sbjct:   10 DLYIPRKCSWTNRLIAAKDHASVQINVADIDPTTGKYEGDYQTYALCGFIRAKGEADLALTELVAKAD 77
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP)

HSP 1 Score: 90.9 bits (224), Expect = 2.690e-22
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   25 SQDLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKAD 234
            S D+Y+PRKCSWTNR+L A DHASVQ+NVG V+  +G FTG+SD YALAG++R  GE D+A+  L  + D
Sbjct:    8 SIDIYIPRKCSWTNRILAAKDHASVQINVGRVN-ANGVFTGESDTYALAGYIRHHGEGDQAITELARQTD 76
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: A0A8J2SUB2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUB2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.170e-21
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   31 DLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKADD 237
            DLY+PRKCSWTNRL+ A D ASVQ+NVG +DP +G  TG S+ YAL+G+VR  GE+D AL  LV K D+
Sbjct:  118 DLYIPRKCSWTNRLIGASDQASVQINVGTIDPNTGLHTGGSETYALSGYVRNKGESDMALTELVRKQDE 186
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BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: A0A5A8C067_CAFRO (40S ribosomal protein S21 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C067_CAFRO)

HSP 1 Score: 89.4 bits (220), Expect = 1.220e-21
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   31 DLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKAD 234
            DLY+PRKCSWTNRL+ A DHA+VQ+NVG+VD  +G + G    +AL G+VR+ GEAD+AL  L+ +AD
Sbjct:   10 DLYIPRKCSWTNRLITAKDHAAVQINVGDVDAATGRYAGTFRTFALCGYVRQKGEADQALNTLIARAD 77
[Close]
BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: A0A024TLB5_9STRA (40S ribosomal protein S21 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLB5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.550e-21
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   31 DLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKADDR 240
            D+Y+PRKCSWTNR+L A DHASVQ+ V  VD  +G +TG++DVYAL+G++R  GE D AL  LV KA+++
Sbjct:   10 DIYIPRKCSWTNRILSAKDHASVQIAVAKVD-ANGVYTGQNDVYALSGYIRAKGEGDHALTDLVRKAEEK 78
[Close]
BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 1.550e-21
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   25 SQDLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGKSDVYALAGFVRRMGEADEALLALVNKAD 234
            S D+Y+PRKCSWTNR+L A DHASVQ+NV  V+  +G FTG+SD +ALAG++R  GEAD AL  L  +AD
Sbjct:    8 SIDIYIPRKCSWTNRILAAKDHASVQINVARVN-ANGVFTGESDTFALAGYIRSKGEADLALTELARQAD 76
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1038.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW88_ECTSI8.320e-3173.6140S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID... [more]
A0A7S0FIC7_9STRA8.170e-2568.1240S ribosomal protein S21 n=1 Tax=Minutocellus pol... [more]
A0A835Z072_9STRA3.230e-2463.2440S ribosomal protein S21 n=1 Tax=Tribonema minus ... [more]
B8BZU9_THAPS3.760e-2361.4340S ribosomal protein S21 n=1 Tax=Thalassiosira ps... [more]
A0A812Q5U2_9DINO4.650e-2363.2440S ribosomal protein S21 n=1 Tax=Symbiodinium sp.... [more]
G4ZUD9_PHYSP2.690e-2260.0040S ribosomal protein S21 n=7 Tax=Peronosporaceae ... [more]
A0A8J2SUB2_9STRA1.170e-2162.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5A8C067_CAFRO1.220e-2158.8240S ribosomal protein S21 n=1 Tax=Cafeteria roenbe... [more]
A0A024TLB5_9STRA1.550e-2158.5740S ribosomal protein S21 n=3 Tax=Aphanomyces TaxI... [more]
K3WSU9_GLOUD1.550e-2161.4340S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1038contigC-australica_Contig_1038:15329..16418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW88
Preferred nameRPS21
PFAMsRibosomal_S21e
Model size252
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K02971,ko:K03093,ko:K03644,ko:K03955,ko:K08854,ko:K10900,ko:K13179,ko:K20168
KEGG TC3.D.1.6
KEGG ReactionR07767,R07768
KEGG Pathwayko00190,ko00785,ko01100,ko03010,ko04137,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05202,map00190,map00785,map01100,map03010,map04137,map04714,map04723,map04932,map05010,map05012,map05016,map05202
KEGG ModuleM00146,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009657,GO:0009658,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030867,GO:0031090,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042127,GO:0042175,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0047485,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons3
Evalue1.36e-31
EggNOG OGsKOG3486@1|root,KOG3486@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S21e
Ec32 orthologEc-01_003800.1
EC2.7.11.1,2.8.1.8,3.6.4.12,3.6.4.13
Descriptionendonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size252
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03011,ko03021,ko03032,ko03041,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586775.1562805-CDS-C-australica_Contig_1038:15328..153811682586775.1562805-CDS-C-australica_Contig_1038:15328..15381Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 15329..15381 +
1682586775.170131-CDS-C-australica_Contig_1038:15557..156061682586775.170131-CDS-C-australica_Contig_1038:15557..15606Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 15558..15606 +
1682586775.1823854-CDS-C-australica_Contig_1038:16268..164181682586775.1823854-CDS-C-australica_Contig_1038:16268..16418Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1038 16269..16418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1038.7.1prot_C-australica_Contig_1038.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1038 15329..16418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1038.7.1

>prot_C-australica_Contig_1038.7.1 ID=prot_C-australica_Contig_1038.7.1|Name=mRNA_C-australica_Contig_1038.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=84bp
MIPIPSPSSQDLYLPRKCSWTNRLLIAGDHASVQLNVGNVDPVSGTFTGK
SDVYALAGFVRRMGEADEALLALVNKADDRGNM*
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mRNA from alignment at C-australica_Contig_1038:15329..16418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1038.7.1 ID=mRNA_C-australica_Contig_1038.7.1|Name=mRNA_C-australica_Contig_1038.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1090bp|location=Sequence derived from alignment at C-australica_Contig_1038:15329..16418+ (Chrysoparadoxa australica CS_1217)
ATGATACCCATCCCTTCTCCCTCCTCCCAGGACCTGTACTTGCCCAGAAA
ATGGTTAGTCTATCATCTCCACTAATTTTGGCCTCCTCCAGTTCGGCCTG
TAAGGGTGGCTAGAGGGCGGTTTGAGGCGCTAGGACTTGCGCAGAGCCTT
TATTTTTGCCTCTATCTTCGTATCGCGCCTTCACGAGGGCGAGAGCTTGT
CTTACACCAACCCCCTTTCTCGCCTACAGCTCCTGGACCAACAGGTTGCT
AATTGCTGGTGACCATGCCTCTGTGCAGGTAGGAATGCATCCAACCCAGC
TGCCTACCTGTGCTGGAACCAAGTCCTTCCAGCGAACCGCCTGAACCTAT
GCTATGCTATGCTCTGTGTCTGCTACCTACCACACCCTCCCCACCATCTC
ACACGTTATATGTTTTTGTGTATTTGTATATCTCCTTTCATGATTTTGCT
AGCATGTATCCACACATTCTTCTCATATCAATATGAAGGGATCTTATATC
TGGAACATGAAATCCTTATTCAACCATATCCAGCTGCCTCACCTCAACTC
TTCGCATGCATTTACTTCTTATCTAATTGCTGACTCTGTTTCCTTAACTC
TCCTCAACTTGCAATGAATGCCCAACCTGAGATGTCTGTAGTTAGACCCA
TGAACCTCTCCTGAGTGCACGGTAGTTTGCCTGGCTCACTTCCTTCTATC
CCGCCTTGGTGCTCTTTATTTGGGTTGAATGCTTTCATCCATAGCCAAAT
TCATGCCGCTGACATAAGTATTGCGCTGCCAGACTTTGCTGGGACCTGAC
GGGCCATATCTGGCTGACACTGTTCTCACCATATATCATGCATCATTTAT
CCCAACGCCCTGCCTACTGCTACTTTACATCATTTAGCTCTCCCCTCCCT
TTCCTGTGAACCTTGATTTGACATCTTCTTCCCACTGCAGCTAAATGTTG
GCAACGTTGACCCTGTGAGCGGTACCTTCACCGGAAAGTCAGACGTGTAC
GCTCTGGCTGGGTTTGTTAGGCGTATGGGGGAGGCTGATGAGGCCTTGTT
AGCTCTTGTCAACAAGGCGGACGACAGAGGCAACATGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_1038:15329..16418+

>mRNA_C-australica_Contig_1038.7.1 ID=mRNA_C-australica_Contig_1038.7.1|Name=mRNA_C-australica_Contig_1038.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=252bp|location=Sequence derived from alignment at C-australica_Contig_1038:15329..16418+ (Chrysoparadoxa australica CS_1217)
ATGATACCCATCCCTTCTCCCTCCTCCCAGGACCTGTACTTGCCCAGAAA
ATGCTCCTGGACCAACAGGTTGCTAATTGCTGGTGACCATGCCTCTGTGC
AGCTAAATGTTGGCAACGTTGACCCTGTGAGCGGTACCTTCACCGGAAAG
TCAGACGTGTACGCTCTGGCTGGGTTTGTTAGGCGTATGGGGGAGGCTGA
TGAGGCCTTGTTAGCTCTTGTCAACAAGGCGGACGACAGAGGCAACATGT
AA
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