mRNA_C-australica_Contig_10368.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10368.1.1
Unique NamemRNA_C-australica_Contig_10368.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10368.1.1 vs. uniprot
Match: A0A3B0UC25_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0UC25_9ZZZZ)

HSP 1 Score: 168 bits (425), Expect = 1.060e-45
Identity = 161/267 (60.30%), Postives = 192/267 (71.91%), Query Frame = 1 
Query:    1 GGNGQVGKTVTEKDKTEGREYTPELHGFQLSGLINYVGYNTIGSQITLGLNSTKNYLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAVNHTGEIGNPKGPAEGTGTAMQLGLVNICGNMGGLXXXXXXXXXXXXXXXXXXXXFFKNEKVGNFSDGPAYGLLNFGYYLNPRVYMSDLFLSNFSINTGKPLNLRVSAAKRHVYSYNEVVYSKNYGTDHGMNWGLSYRAGIISYYKDIVPENRKN 801
            GGN  VG T  EK K     Y   L GFQL+G++NY G NT G+QIT+G+N+T+ YL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       + A NH G I   KGP   T TAMQ+G++N  G+MGG XXXXXXXXXXXXXXXXXXXX FK  K  ++   PA+GLLN G  +NPR Y+S+L+L+N+ + TGK LN +V +A R VYSYNE++YS NY  +  + WG SYR GIIS+ K   P   +N
Sbjct:   92 GGNEMVGLTEKEKRKQIRNGYETNLTGFQLAGVLNYTGANTEGAQITVGVNNTQKYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSATGMQIGAYNHAGVINPTKGPNPSTNTAMQIGIINTTGDMGGWXXXXXXXXXXXXXXXXXXXXIFKMPKPVDYKASPAFGLLNIGGSMNPRFYVSELYLTNYGLFTGKGLNSKVRSASRFVYSYNEIIYSTNYKQEREIKWGASYRFGIISFTKSQDPNVWRN 358
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10368.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3B0UC25_9ZZZZ1.060e-4560.30Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10368contigC-australica_Contig_10368:20..823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size804
Hectar predicted targeting categoryother localisation
Exons1
Cds size804
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586773.500741-CDS-C-australica_Contig_10368:19..8231682586773.500741-CDS-C-australica_Contig_10368:19..823Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10368 20..823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10368.1.1prot_C-australica_Contig_10368.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10368 20..823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10368.1.1

>prot_C-australica_Contig_10368.1.1 ID=prot_C-australica_Contig_10368.1.1|Name=mRNA_C-australica_Contig_10368.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=268bp
GGNGQVGKTVTEKDKTEGREYTPELHGFQLSGLINYVGYNTIGSQITLGL
NSTKNYLLGVQISGILNSVGSFTSGAQIALGGNLTRKSMSGTQASLLFNS
SGGRHSGFQLSAVNHTGEIGNPKGPAEGTGTAMQLGLVNICGNMGGLQVG
LINIGDRVGGTQIGLINFFKNEKVGNFSDGPAYGLLNFGYYLNPRVYMSD
LFLSNFSINTGKPLNLRVSAAKRHVYSYNEVVYSKNYGTDHGMNWGLSYR
AGIISYYKDIVPENRKN*
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mRNA from alignment at C-australica_Contig_10368:20..823-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10368.1.1 ID=mRNA_C-australica_Contig_10368.1.1|Name=mRNA_C-australica_Contig_10368.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=804bp|location=Sequence derived from alignment at C-australica_Contig_10368:20..823- (Chrysoparadoxa australica CS_1217)
GGTGGAAATGGCCAGGTAGGTAAAACAGTCACTGAAAAAGATAAAACTGA
GGGTAGAGAATACACCCCTGAATTGCATGGGTTTCAATTATCTGGTCTCA
TCAATTATGTAGGTTACAATACAATTGGGAGTCAGATAACACTTGGGCTT
AATAGTACAAAAAACTATCTGCTAGGCGTTCAAATCAGCGGGATTCTGAA
TAGTGTCGGTTCTTTTACAAGCGGTGCTCAAATTGCGCTGGGAGGAAACT
TGACAAGAAAATCAATGTCCGGCACACAAGCTTCACTTCTTTTTAATTCA
TCGGGAGGGAGACATTCAGGCTTTCAATTATCAGCAGTGAATCATACGGG
CGAAATAGGCAATCCCAAAGGCCCAGCTGAAGGTACAGGAACTGCCATGC
AATTAGGACTGGTCAATATCTGTGGAAATATGGGTGGACTTCAGGTTGGG
TTGATCAACATCGGTGACAGAGTTGGAGGAACACAAATAGGACTCATTAA
CTTCTTCAAAAATGAAAAGGTGGGGAACTTCTCAGATGGCCCAGCCTACG
GATTATTGAATTTTGGGTATTACCTTAACCCAAGGGTTTATATGTCAGAC
CTATTCCTTTCCAATTTCAGCATCAATACAGGAAAGCCCCTGAACTTGCG
GGTGTCAGCCGCTAAACGGCACGTTTACTCCTACAATGAGGTCGTTTATT
CTAAAAATTATGGTACGGATCATGGTATGAATTGGGGGCTCAGTTATCGG
GCTGGTATTATTTCTTATTACAAAGATATAGTCCCCGAAAATAGGAAAAA
CTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10368:20..823-

>mRNA_C-australica_Contig_10368.1.1 ID=mRNA_C-australica_Contig_10368.1.1|Name=mRNA_C-australica_Contig_10368.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=804bp|location=Sequence derived from alignment at C-australica_Contig_10368:20..823- (Chrysoparadoxa australica CS_1217)
GGTGGAAATGGCCAGGTAGGTAAAACAGTCACTGAAAAAGATAAAACTGA
GGGTAGAGAATACACCCCTGAATTGCATGGGTTTCAATTATCTGGTCTCA
TCAATTATGTAGGTTACAATACAATTGGGAGTCAGATAACACTTGGGCTT
AATAGTACAAAAAACTATCTGCTAGGCGTTCAAATCAGCGGGATTCTGAA
TAGTGTCGGTTCTTTTACAAGCGGTGCTCAAATTGCGCTGGGAGGAAACT
TGACAAGAAAATCAATGTCCGGCACACAAGCTTCACTTCTTTTTAATTCA
TCGGGAGGGAGACATTCAGGCTTTCAATTATCAGCAGTGAATCATACGGG
CGAAATAGGCAATCCCAAAGGCCCAGCTGAAGGTACAGGAACTGCCATGC
AATTAGGACTGGTCAATATCTGTGGAAATATGGGTGGACTTCAGGTTGGG
TTGATCAACATCGGTGACAGAGTTGGAGGAACACAAATAGGACTCATTAA
CTTCTTCAAAAATGAAAAGGTGGGGAACTTCTCAGATGGCCCAGCCTACG
GATTATTGAATTTTGGGTATTACCTTAACCCAAGGGTTTATATGTCAGAC
CTATTCCTTTCCAATTTCAGCATCAATACAGGAAAGCCCCTGAACTTGCG
GGTGTCAGCCGCTAAACGGCACGTTTACTCCTACAATGAGGTCGTTTATT
CTAAAAATTATGGTACGGATCATGGTATGAATTGGGGGCTCAGTTATCGG
GCTGGTATTATTTCTTATTACAAAGATATAGTCCCCGAAAATAGGAAAAA
CTAA
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