mRNA_C-australica_Contig_10341.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10341.1.1
Unique NamemRNA_C-australica_Contig_10341.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: UPI0003739EDF (OmpA family protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI0003739EDF)

HSP 1 Score: 286 bits (733), Expect = 7.500e-93
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1
Query:   49 MKHGWILLLSLLLIPLTPLNAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDVADNVS 474
            MKHGWILLLSLLLIPLTPLNAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFD+NYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDV DNVS
Sbjct:    1 MKHGWILLLSLLLIPLTPLNAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDINYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDVDDNVS 142          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A3F3I5G1_9BACT (OmpA-like domain-containing protein n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3F3I5G1_9BACT)

HSP 1 Score: 144 bits (362), Expect = 8.280e-38
Identity = 66/123 (53.66%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  106 NAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDVADNVS 474
            NAQT + K W+S NVG+HQYDGD  NEM  FD+ KD+SGG G+H +LN SF+ NY  ++G LD DY    F KYF  NN    FN AN I+ ++D+ +QPF+G GA  TYF G  E + DNVS
Sbjct:   20 NAQTSENKTWLSFNVGNHQYDGDLGNEMTAFDILKDVSGGIGVHQYLNKSFNFNYALNYGLLDTDYGSNRFSKYFLNNNFTAHFNLANGIVLKEDSWIQPFVGTGASLTYFFGEQESIDDNVS 142          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A1B6Y7X2_9BACT (OmpA-like domain-containing protein n=2 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6Y7X2_9BACT)

HSP 1 Score: 138 bits (347), Expect = 1.060e-35
Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  109 AQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDVADNV 471
             Q  D K W+SLN+G HQYDGD+ NE+ + +V  D+S G G+H +LNN+FDLNY F++GSLD D     FRK F +NNL + FN ANDIIF+KDA ++PFIGAG G +YF G +  ++D +
Sbjct:   11 GQNSDSKTWISLNIGTHQYDGDFTNEIFKPEVYTDVSVGLGVHRYLNNTFDLNYEFNYGSLDTDNMDPGFRKLFLSNNLMIDFNLANDIIFKKDAFVRPFIGAGYGVSYFFGKNNSISDEL 131          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A3D1G9M7_9BACT (OmpA-like domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G9M7_9BACT)

HSP 1 Score: 124 bits (311), Expect = 1.830e-30
Identity = 56/122 (45.90%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  109 AQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDVADNVS 474
            AQT+D   W+S++VGHH+Y+GDY+NEM  FD+ KD++ G GLH ++N++FD  YT + GSLD DY    F+K+F+ NN   ++  AN  +  +++ ++PF+  GAG T FTG  E + +NVS
Sbjct:   30 AQTKDNPTWLSVSVGHHEYNGDYSNEMFHFDIPKDMTAGIGLHHYINSNFDFLYTLNLGSLDTDYGTR-FKKFFWNNNFQFKYKLANGSLLSEESKVKPFLTLGAGLTAFTGKDEAIDNNVS 150          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A1M5AI07_9BACT (Outer membrane protein OmpA n=1 Tax=Aliifodinibius roseus TaxID=1194090 RepID=A0A1M5AI07_9BACT)

HSP 1 Score: 103 bits (256), Expect = 8.370e-23
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  103 LNAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLD--NDYPPE------TFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDVADN 468
            L+AQT+D   WMS+++GH++YDGD  NEM++++V  D S G GLH +L+ SFD +   ++G LD  N   P       +F   +   NL L++  AN  IF ++A LQPF+ AG G T + GGS+++ +N
Sbjct:   19 LHAQTEDHPTWMSIHLGHNEYDGDLGNEMLEYEVDTDWSAGIGLHQYLSPSFDFDAILEYGYLDYKNQEDPNDVKAHNSFGTKYVNANLMLRYKLANGYIFSQNATLQPFLAAGVGVTPYFGGSDNIYEN 148          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A521AP86_9BACT (Outer membrane protein OmpA n=1 Tax=Aliifodinibius sediminis TaxID=1214077 RepID=A0A521AP86_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.240e-22
Identity = 54/132 (40.91%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  103 LNAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLD----NDYPP----ETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGSEDVADNVS 474
            L AQT+D   WMS+++GH++YDGD  NEM++++V  D S G G H +L+ SFD +   ++G LD    +D  P     +F   +   NL L++  AN  IF +DA LQPF+ AG G T + GGS+++ +  S
Sbjct:   19 LQAQTEDRPTWMSIHIGHNEYDGDLGNEMLEYEVDTDWSAGIGFHQYLSPSFDFDAILEYGYLDYKNQDDSNPVKADNSFGTKYINANLMLRYKLANGYIFSEDATLQPFLAAGLGVTPYFGGSDNIYEGQS 150          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A2D4ZRJ8_9BACT (Cell envelope biogenesis protein OmpA n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A2D4ZRJ8_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 7.980e-19
Identity = 49/137 (35.77%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   40 GQIMKHGWILLLSLLLIPLTPLNAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGS 450
             +I+   +I+L  L++ P+T  NAQT ++K W+S+ +GHH+ D D  +EM +F+V +D+ GG  +  +LN+SFD N+    G +D++Y   +F +Y    NL  ++ FAN  I  K++ ++P++ AG G + +  GS
Sbjct:    3 NKIITGFFIMLCGLMISPIT--NAQTIEDKTWLSVYLGHHEVDVDGYSEMGKFNVPRDVGGGISIQRYLNDSFDANFGIYLGRVDHEYN-NSFSRYMVNTNLTARYKFANGYIIEKESTVRPYLLAGLGFSRYAEGS 136          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: UPI000399FF7F (OmpA family protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI000399FF7F)

HSP 1 Score: 84.7 bits (208), Expect = 3.010e-16
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  109 AQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDNDYPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGS 450
            AQT ++K W+S+ + H++ D D   EM +F++ KD+ GG  +  +L+ SFDLN     G +DN++  + F KY    N+  ++ FAN  I  +DA +QPF+  G G  +F  GS
Sbjct:    7 AQTIEDKTWISIFLSHNEIDADGYTEMGKFNIPKDMGGGIAIDRYLSPSFDLNAGLYLGRVDNEFTAQ-FSKYMINTNITAEYKFANGYIVEEDAAIQPFLLGGLGYAWFEKGS 119          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A3D2ICL6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3D2ICL6_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 4.250e-13
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   28 SKLIGQIMKHGWILLLSLLLIPLTPLNAQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDNDYPPETFRKYFFANNL 345
            + +  +I+   +I+L  L++ P+T  NAQT ++K W+S+ +GHH+ D D  +EM +F+V +D+ GG  +  +LN+SFD N+    G +D++Y   +F +Y    NL
Sbjct:   11 TDMFNKIITGFFIMLCGLMISPIT--NAQTIEDKTWLSVYLGHHEVDVDGYSEMGKFNVPRDVGGGISIQRYLNDSFDANFGIYLGRVDHEYN-NSFSRYMVNTNL 113          
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Match: A0A6M1SU11_9BACT (OmpA family protein n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SU11_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.070e-6
Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  109 AQTQDEKVWMSLNVGHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLD 294
            AQ+++   W++ +VGH +Y+GD+ NE++ F+V  D + G  L  +L N FD   + D+  LD
Sbjct:   32 AQSRNRPTWITFSVGHQEYNGDFGNEILAFEVGYDWTLGLELDQYLGNLFDFELSMDYAELD 93          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10341.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI0003739EDF7.500e-9398.59OmpA family protein n=1 Tax=Balneola vulgaris TaxI... [more]
A0A3F3I5G1_9BACT8.280e-3853.66OmpA-like domain-containing protein n=4 Tax=Bacter... [more]
A0A1B6Y7X2_9BACT1.060e-3553.72OmpA-like domain-containing protein n=2 Tax=Balneo... [more]
A0A3D1G9M7_9BACT1.830e-3045.90OmpA-like domain-containing protein n=1 Tax=Balneo... [more]
A0A1M5AI07_9BACT8.370e-2341.54Outer membrane protein OmpA n=1 Tax=Aliifodinibius... [more]
A0A521AP86_9BACT2.240e-2240.91Outer membrane protein OmpA n=1 Tax=Aliifodinibius... [more]
A0A2D4ZRJ8_9BACT7.980e-1935.77Cell envelope biogenesis protein OmpA n=3 Tax=Bact... [more]
UPI000399FF7F3.010e-1637.72OmpA family protein n=1 Tax=Balneola vulgaris TaxI... [more]
A0A3D2ICL6_9BACT4.250e-1335.85Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A6M1SU11_9BACT5.070e-637.10OmpA family protein n=1 Tax=Balneolaceae bacterium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10341contigC-australica_Contig_10341:2..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121104.AQXH01000001_gene2199
PFAMsOMP_b-brl,OmpA,TSP_3
Model size474
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.19e-105
EggNOG OGsCOG2885@1|root,COG2885@2|Bacteria,4NE8J@976|Bacteroidetes,1IWKW@117747|Sphingobacteriia
DescriptionThrombospondin type 3 repeat
Cds size474
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586771.9987562-CDS-C-australica_Contig_10341:1..4751682586771.9987562-CDS-C-australica_Contig_10341:1..475Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10341 2..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10341.1.1prot_C-australica_Contig_10341.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10341 2..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10341.1.1

>prot_C-australica_Contig_10341.1.1 ID=prot_C-australica_Contig_10341.1.1|Name=mRNA_C-australica_Contig_10341.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=158bp
MHILDSIDNSKLIGQIMKHGWILLLSLLLIPLTPLNAQTQDEKVWMSLNV
GHHQYDGDYANEMMQFDVAKDLSGGFGLHFFLNNSFDLNYTFDFGSLDND
YPPETFRKYFFANNLNLQFNFANDIIFRKDAPLQPFIGAGAGATYFTGGS
EDVADNVS
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mRNA from alignment at C-australica_Contig_10341:2..475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10341.1.1 ID=mRNA_C-australica_Contig_10341.1.1|Name=mRNA_C-australica_Contig_10341.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=474bp|location=Sequence derived from alignment at C-australica_Contig_10341:2..475- (Chrysoparadoxa australica CS_1217)
ATGCACATTTTGGATTCAATCGACAATTCTAAACTTATAGGACAGATTAT GAAACATGGATGGATACTATTACTCAGCCTATTGTTGATTCCCCTCACTC CGCTTAACGCTCAAACTCAAGATGAGAAAGTTTGGATGTCTCTAAATGTA GGGCACCACCAATACGACGGCGATTACGCCAATGAAATGATGCAATTTGA TGTAGCTAAAGACCTTTCAGGTGGATTTGGGCTTCATTTCTTTCTGAATA ACTCTTTCGATTTAAATTACACCTTCGACTTTGGTTCACTCGATAACGAT TACCCACCTGAGACCTTCAGAAAATACTTTTTTGCTAATAATTTAAACCT GCAGTTCAATTTTGCGAATGATATCATCTTTCGAAAAGATGCTCCTCTTC AGCCATTTATAGGCGCAGGTGCTGGAGCCACATACTTCACAGGCGGTTCT GAAGACGTTGCCGATAATGTCTCG
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Coding sequence (CDS) from alignment at C-australica_Contig_10341:2..475-

>mRNA_C-australica_Contig_10341.1.1 ID=mRNA_C-australica_Contig_10341.1.1|Name=mRNA_C-australica_Contig_10341.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=474bp|location=Sequence derived from alignment at C-australica_Contig_10341:2..475- (Chrysoparadoxa australica CS_1217)
ATGCACATTTTGGATTCAATCGACAATTCTAAACTTATAGGACAGATTAT
GAAACATGGATGGATACTATTACTCAGCCTATTGTTGATTCCCCTCACTC
CGCTTAACGCTCAAACTCAAGATGAGAAAGTTTGGATGTCTCTAAATGTA
GGGCACCACCAATACGACGGCGATTACGCCAATGAAATGATGCAATTTGA
TGTAGCTAAAGACCTTTCAGGTGGATTTGGGCTTCATTTCTTTCTGAATA
ACTCTTTCGATTTAAATTACACCTTCGACTTTGGTTCACTCGATAACGAT
TACCCACCTGAGACCTTCAGAAAATACTTTTTTGCTAATAATTTAAACCT
GCAGTTCAATTTTGCGAATGATATCATCTTTCGAAAAGATGCTCCTCTTC
AGCCATTTATAGGCGCAGGTGCTGGAGCCACATACTTCACAGGCGGTTCT
GAAGACGTTGCCGATAATGTCTCG
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