mRNA_C-australica_Contig_10338.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10338.1.1
Unique NamemRNA_C-australica_Contig_10338.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: A0A239FWA1_9RHOB (TRAP transporter, DctM subunit n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A239FWA1_9RHOB)

HSP 1 Score: 482 bits (1240), Expect = 1.360e-168
Identity = 255/273 (93.41%), Postives = 263/273 (96.34%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKFD 819
            GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQL LQPA+D  MPW GRA AFRGAFLALLVPVG VLGIRLG+FTPTEAGAMAVLFA+IVGLIHGDL+ AHI PILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAE MLSLTS+PLLLLLIINLLLI+AGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTC+ITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWL NL+FD
Sbjct:  154 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLGLQPAFDHPMPWAGRAHAFRGAFLALLVPVGIVLGIRLGFFTPTEAGAMAVLFAIIVGLIHGDLRLAHIRPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEVMLSLTSEPLLLLLIINLLLIIAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCMITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLPNLQFD 426          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: UPI0008D25115 (TRAP transporter large permease n=1 Tax=Marinovum algicola TaxID=42444 RepID=UPI0008D25115)

HSP 1 Score: 454 bits (1168), Expect = 1.370e-157
Identity = 235/273 (86.08%), Postives = 255/273 (93.41%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKFD 819
            GLILYGFMGDVSIGRLFLAGIVPGV+ICAAMM AVA+RARQL+LQPAY+  +PW GR RAFRGAFLALLVPVG VLGIRLGYFTPTEAGAMAVLFAV+VGL+HGDLK +HI PILEQTMQATAVILL+ICAANAFGFYMTWERIPAQVAEAML+LT +PLLLLL+INLLL+LAGMFIEGSAALILLTPILVPVITK+G+DPVHFG+VMVFNLT+AGVTPPLGTLMFTTC ITG  I  FIRA  PFY+VLFGML VLTY+PQLSLWL NL+FD
Sbjct:  154 GLILYGFMGDVSIGRLFLAGIVPGVLICAAMMGAVALRARQLDLQPAYEAPLPWAGRGRAFRGAFLALLVPVGIVLGIRLGYFTPTEAGAMAVLFAVVVGLVHGDLKLSHIRPILEQTMQATAVILLIICAANAFGFYMTWERIPAQVAEAMLALTQNPLLLLLLINLLLVLAGMFIEGSAALILLTPILVPVITKVGIDPVHFGVVMVFNLTVAGVTPPLGTLMFTTCSITGVRIADFIRACAPFYLVLFGMLFVLTYLPQLSLWLPNLQFD 426          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: A0A0W7WGY6_9RHOB (C4-dicarboxylate ABC transporter n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WGY6_9RHOB)

HSP 1 Score: 446 bits (1146), Expect = 2.640e-154
Identity = 232/273 (84.98%), Postives = 254/273 (93.04%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKFD 819
            GLILYGFMGDVSIGRLFLAG+VPGVVICAAMM AVA+RARQL L+PA+D  + W+ RA  FRGAFLALLVPVG V+GIRLG+FTPTEAGAMAVLFAV+VGL HG+LK AH+ PILEQTMQATAVILLVIC ANAFGFYMTWE+IPAQVA AML+LT +PL LLL+INLLLILAGMFIEGSAALILLTPILVPV+TKLGVDPVHFGIVMVFNLT+AGVTPPLGTLMFTTC +TGTPIG+FIRA+LPFY VLFGMLIVLTY+PQLSLWL NL+FD
Sbjct:  154 GLILYGFMGDVSIGRLFLAGVVPGVVICAAMMGAVALRARQLGLRPAFDAPLAWSARAVRFRGAFLALLVPVGIVMGIRLGFFTPTEAGAMAVLFAVLVGLAHGELKLAHLRPILEQTMQATAVILLVICTANAFGFYMTWEQIPAQVATAMLALTDNPLALLLVINLLLILAGMFIEGSAALILLTPILVPVVTKLGVDPVHFGIVMVFNLTVAGVTPPLGTLMFTTCSVTGTPIGQFIRAALPFYAVLFGMLIVLTYLPQLSLWLPNLQFD 426          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: A0A1M5QJJ2_9RHOB (TRAP transporter, DctM subunit n=1 Tax=Cognatishimia maritima TaxID=870908 RepID=A0A1M5QJJ2_9RHOB)

HSP 1 Score: 419 bits (1076), Expect = 1.130e-143
Identity = 215/273 (78.75%), Postives = 246/273 (90.11%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKFD 819
            GLILYGFMGDVSIG+LFLAGIVPGVVICA MMV VA  AR+L L+PA+D   PW+ R RAF  AFLAL+VPVG VLGIRLG+FTPTEAGAMAV FA IVG+++GDLK +HI PILEQTMQATAVILLVIC A+AFGFYMTWE+IP+ +A+AML+LT +P LLL++INLLL++ GMFIEGSAALILLTPILVPVITK+G+DPVHFGIVMVFNLT+AGVTPPLGTLMFTTC ITG PI KFIRA++PFYI+LFGML VLT++PQLSLWL NLKF+
Sbjct:  154 GLILYGFMGDVSIGQLFLAGIVPGVVICAGMMVTVAYEARRLELKPAFDAPAPWSVRGRAFASAFLALMVPVGIVLGIRLGFFTPTEAGAMAVAFAAIVGILYGDLKLSHIQPILEQTMQATAVILLVICMASAFGFYMTWEQIPSALAKAMLALTENPYLLLILINLLLVVVGMFIEGSAALILLTPILVPVITKVGIDPVHFGIVMVFNLTVAGVTPPLGTLMFTTCSITGVPISKFIRAAVPFYILLFGMLFVLTFIPQLSLWLPNLKFN 426          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: UPI001ABA662C (TRAP transporter large permease n=1 Tax=Jannaschia marina TaxID=2741674 RepID=UPI001ABA662C)

HSP 1 Score: 418 bits (1075), Expect = 1.500e-143
Identity = 216/273 (79.12%), Postives = 246/273 (90.11%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKFD 819
            GLILYGFMG+VSIG+LFLAGIVPG+VIC  MM  VA+RARQL+L+PA+  +M W GR RAF  AFLALLVPVG V GIR G+FTPTEAGAMAVL AV+VGLIHGDL  AHI+PILEQTMQATAVILLVICAA+AFGFYMTWERIPA VA+AML+LT +P++LLLI+NLLLILAGMFIEGSAALILLTP+LVPV+T++GVDPVHFGIVMVFNLTIAGVTPPLGTLMFT C ITG  IG+FIR+S+PFY +LF ML++LT+VPQLSLWL  L+FD
Sbjct:  152 GLILYGFMGNVSIGQLFLAGIVPGMVICMGMMALVAVRARQLDLRPAFPHRMTWAGRGRAFAQAFLALLVPVGIVAGIRCGFFTPTEAGAMAVLLAVLVGLIHGDLGVAHIVPILEQTMQATAVILLVICAAHAFGFYMTWERIPAMVADAMLALTRNPVVLLLIVNLLLILAGMFIEGSAALILLTPVLVPVVTEVGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTACAITGVSIGQFIRSSIPFYALLFAMLLILTFVPQLSLWLPELRFD 424          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: UPI000A97CCD2 (TRAP transporter large permease n=2 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI000A97CCD2)

HSP 1 Score: 411 bits (1056), Expect = 1.230e-140
Identity = 214/272 (78.68%), Postives = 243/272 (89.34%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKF 816
            GLILYGFMG+VSIG+LF+AGIVPGVVIC AMM  VAI+AR+ NL+ A ++ MPW  R RAF GAFLALLVPVG VLGIRLG+FTPTEAGAMAVLFA IVGLI+G+LK  H+ PILEQT+QATAVILLVICAA AFGFYMTWERIPA +A+ ML+LT++P LLL++INLLLIL GMFIEG+AALILLTPILVPVIT++G+DPVHFGIVMVFNLT+AGVTPPLGTLMFT C ITG  I +FI+A LPFYIVLFGMLIVLTY+PQLSLWL  L+F
Sbjct:  154 GLILYGFMGNVSIGKLFMAGIVPGVVICMAMMATVAIQARRANLEAALEKPMPWIDRGRAFTGAFLALLVPVGIVLGIRLGFFTPTEAGAMAVLFAAIVGLIYGELKFEHLRPILEQTVQATAVILLVICAAGAFGFYMTWERIPAVIAQEMLNLTANPYLLLVLINLLLILVGMFIEGTAALILLTPILVPVITEVGIDPVHFGIVMVFNLTVAGVTPPLGTLMFTACSITGVSIARFIKACLPFYIVLFGMLIVLTYIPQLSLWLPELQF 425          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: A0A3M1A1J2_9PROT (TRAP transporter large permease (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1A1J2_9PROT)

HSP 1 Score: 404 bits (1037), Expect = 5.570e-139
Identity = 211/272 (77.57%), Postives = 242/272 (88.97%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKF 816
            GLILYGFMGDVSIGRLF+AGI+PGV+ CAAMM AVA+++R+L L+PA +R MPW  R RA   A LAL VPVG VLGIRLGYFTPTEAGAMAVLF+++VGL + +L+ AH+ PILEQTMQATAVILLVIC A+AFGFYMTWERIPA VAEAML LT+DPL+LLL+INLLLILAGMFIEGSAALILLTPILVPV+TK+G+DPVHFGIVMVFNLT+AGVTPPLGTLMFTTC IT  PI  F+RASLPFY VLF ML++L++VP LSLWL +L+F
Sbjct:   71 GLILYGFMGDVSIGRLFMAGILPGVLTCAAMMGAVAVQSRRLGLKPALERPMPWRLRGRALLEALLALTVPVGIVLGIRLGYFTPTEAGAMAVLFSILVGLAYRELRLAHVRPILEQTMQATAVILLVICMASAFGFYMTWERIPATVAEAMLDLTADPLVLLLLINLLLILAGMFIEGSAALILLTPILVPVVTKVGIDPVHFGIVMVFNLTVAGVTPPLGTLMFTTCAITRVPIADFVRASLPFYAVLFAMLMLLSFVPGLSLWLPHLEF 342          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: UPI000DF13235 (TRAP transporter large permease n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=UPI000DF13235)

HSP 1 Score: 380 bits (975), Expect = 2.310e-128
Identity = 197/272 (72.43%), Postives = 232/272 (85.29%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKF 816
            GLILYGFMGDVSIGRLFLAGIVPG+V+C AMM  V + +R+  ++P+ +R   W  R  + + A LALLVP+G V+GIR G+FTPTEAGAMAV FAVI+GLI  +LK  H+ PILEQT QATAV+LLVIC ANAFGFYMTWERIPA VA+ ML LT+DP+ LLL+INL+L+L GMF+EGSAALILLTPIL+PV++ LG+DPVHFGIVMV NLTIAGVTPPLGTLMFTTC ITG PIG+FIRA+LPFY VLF ML+++T+VPQLSLWL NLKF
Sbjct:  154 GLILYGFMGDVSIGRLFLAGIVPGIVLCMAMMSLVMVLSRRGGMKPSLERPASWQERWSSLKTAGLALLVPIGIVVGIRFGFFTPTEAGAMAVAFAVIIGLILRELKWRHVRPILEQTSQATAVVLLVICMANAFGFYMTWERIPAAVADWMLKLTADPVFLLLLINLMLVLVGMFLEGSAALILLTPILIPVVSALGIDPVHFGIVMVLNLTIAGVTPPLGTLMFTTCAITGVPIGRFIRAALPFYGVLFAMLLLVTFVPQLSLWLPNLKF 425          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: A0A0M9GMC6_9HYPH (C4-dicarboxylate ABC transporter n=1 Tax=Ahrensia marina TaxID=1514904 RepID=A0A0M9GMC6_9HYPH)

HSP 1 Score: 375 bits (963), Expect = 1.630e-126
Identity = 189/273 (69.23%), Postives = 232/273 (84.98%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKFD 819
            GLILYGFM DVSIGRLFLAGIVPG+V+C +MM  VA  A++LNL+PA D +  W  R  AFRGA LAL+VPVG V GIR G+FTPTEAGAMAV+F++ VG+++G+LK  H  PI+EQT+QATA++LLVIC A+ FGF+MTWERIP  VAEAML+LT +P LLLL+IN+LLI+ GMFIEGSA+LILLTPILVPVI  +G+DPVHFGIVMV NLTIAG+TPPLGT+MFTTC +TG  IG F+RA+LPFY +LF ML++LT++P +SLWL NL+F+
Sbjct:  155 GLILYGFMSDVSIGRLFLAGIVPGIVLCVSMMALVAFMAKRLNLKPALDVKTTWGQRLVAFRGASLALMVPVGIVGGIRFGFFTPTEAGAMAVVFSIFVGILYGELKPHHFKPIMEQTIQATAIVLLVICMASTFGFFMTWERIPVIVAEAMLALTENPFLLLLMINVLLIIVGMFIEGSASLILLTPILVPVIASVGIDPVHFGIVMVLNLTIAGITPPLGTIMFTTCAVTGISIGAFVRAALPFYALLFTMLLILTFIPAISLWLPNLQFN 427          
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Match: UPI00067B8D03 (TRAP transporter large permease n=1 Tax=Pseudorhodobacter wandonensis TaxID=1120568 RepID=UPI00067B8D03)

HSP 1 Score: 374 bits (961), Expect = 3.160e-126
Identity = 191/273 (69.96%), Postives = 230/273 (84.25%), Query Frame = 1
Query:    1 GLILYGFMGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGRARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLKAAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTSDPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIVMVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVLTYVPQLSLWLSNLKFD 819
            GLILYGFMG+VSIGRLFLAGIVPG ++C AMM+ VA+ A++  L+PA+D  MPW  R    R A LA+ VP G V GIR G+FTPTEAGAMAVLFAVIVGL++ +LK +H++PILEQT QATA+ILLVICAA AFGFYMTWERIP  +A AML+LT +P+LLLLIINLLLI+ GMFIEG+AA+ILL PILVPVI  + +DPVHFGI+MV NLTIAGVTPPLGTLMFTTC ITG  IG F+RASLPFY +LFGML++++Y+P+LSLWL + + +
Sbjct:  154 GLILYGFMGNVSIGRLFLAGIVPGALLCIAMMLLVALLAKRHGLRPAFDAPMPWPQRLATLRAACLAMTVPFGIVFGIRFGWFTPTEAGAMAVLFAVIVGLLYRELKWSHVVPILEQTAQATAIILLVICAAQAFGFYMTWERIPETIARAMLALTENPILLLLIINLLLIIVGMFIEGTAAIILLAPILVPVIASVNIDPVHFGIIMVLNLTIAGVTPPLGTLMFTTCAITGVSIGAFVRASLPFYALLFGMLMLISYLPELSLWLPDFRMN 426          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10338.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A239FWA1_9RHOB1.360e-16893.41TRAP transporter, DctM subunit n=5 Tax=Roseobacter... [more]
UPI0008D251151.370e-15786.08TRAP transporter large permease n=1 Tax=Marinovum ... [more]
A0A0W7WGY6_9RHOB2.640e-15484.98C4-dicarboxylate ABC transporter n=1 Tax=Ponticocc... [more]
A0A1M5QJJ2_9RHOB1.130e-14378.75TRAP transporter, DctM subunit n=1 Tax=Cognatishim... [more]
UPI001ABA662C1.500e-14379.12TRAP transporter large permease n=1 Tax=Jannaschia... [more]
UPI000A97CCD21.230e-14078.68TRAP transporter large permease n=2 Tax=Ectothiorh... [more]
A0A3M1A1J2_9PROT5.570e-13977.57TRAP transporter large permease (Fragment) n=1 Tax... [more]
UPI000DF132352.310e-12872.43TRAP transporter large permease n=1 Tax=Notoacmeib... [more]
A0A0M9GMC6_9HYPH1.630e-12669.23C4-dicarboxylate ABC transporter n=1 Tax=Ahrensia ... [more]
UPI00067B8D033.160e-12669.96TRAP transporter large permease n=1 Tax=Pseudorhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10338contigC-australica_Contig_10338:4..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1469245.JFBG01000001_gene518
PFAMsDctM
Model size822
Max annot lvl135613|Chromatiales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.81e-133
EggNOG OGsCOG1593@1|root,COG1593@2|Bacteria,1MU0F@1224|Proteobacteria,1RNAM@1236|Gammaproteobacteria,1WWRM@135613|Chromatiales
DescriptionPFAM TRAP C4-dicarboxylate transport system permease DctM subunit
Cds size801
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586771.3929546-CDS-C-australica_Contig_10338:3..8041682586771.3929546-CDS-C-australica_Contig_10338:3..804Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10338 4..804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586771.4092011-UTR-C-australica_Contig_10338:804..8251682586771.4092011-UTR-C-australica_Contig_10338:804..825Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10338 805..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10338.1.1prot_C-australica_Contig_10338.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10338 4..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10338.1.1

>prot_C-australica_Contig_10338.1.1 ID=prot_C-australica_Contig_10338.1.1|Name=mRNA_C-australica_Contig_10338.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=267bp
MGDVSIGRLFLAGIVPGVVICAAMMVAVAIRARQLNLQPAYDRQMPWTGR
ARAFRGAFLALLVPVGTVLGIRLGYFTPTEAGAMAVLFAVIVGLIHGDLK
AAHILPILEQTMQATAVILLVICAANAFGFYMTWERIPAQVAEAMLSLTS
DPLLLLLIINLLLILAGMFIEGSAALILLTPILVPVITKLGVDPVHFGIV
MVFNLTIAGVTPPLGTLMFTTCLITGTPIGKFIRASLPFYIVLFGMLIVL
TYVPQLSLWLSNLKFD*
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mRNA from alignment at C-australica_Contig_10338:4..825-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10338.1.1 ID=mRNA_C-australica_Contig_10338.1.1|Name=mRNA_C-australica_Contig_10338.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=822bp|location=Sequence derived from alignment at C-australica_Contig_10338:4..825- (Chrysoparadoxa australica CS_1217)
GGGCTGATCCTCTATGGGTTCATGGGGGACGTATCGATCGGGCGGCTGTT TCTTGCAGGCATCGTGCCGGGCGTGGTGATCTGCGCCGCCATGATGGTCG CCGTGGCGATCCGTGCGCGGCAGTTGAACCTGCAACCGGCCTATGACCGC CAGATGCCCTGGACGGGCCGCGCCCGCGCCTTTCGCGGGGCCTTTCTGGC GCTGCTGGTGCCGGTAGGCACCGTCCTTGGCATCCGGCTGGGCTATTTCA CCCCGACAGAGGCGGGGGCCATGGCCGTGCTGTTTGCCGTCATCGTCGGG CTGATCCACGGCGACCTGAAAGCCGCCCACATCCTGCCAATCCTCGAACA GACCATGCAGGCCACCGCCGTGATCCTGCTGGTGATCTGCGCCGCCAATG CGTTCGGGTTCTACATGACATGGGAACGCATCCCGGCGCAGGTGGCCGAG GCGATGCTATCGCTGACCTCTGATCCGCTTCTGCTGCTGCTGATCATCAA CCTCTTGCTGATCCTTGCGGGCATGTTCATCGAAGGCTCTGCCGCGCTGA TCCTGCTGACGCCGATCCTTGTACCCGTCATCACCAAACTGGGCGTCGAC CCGGTGCATTTCGGCATCGTCATGGTGTTCAACCTGACCATCGCCGGGGT CACGCCGCCGCTTGGCACGCTGATGTTCACCACCTGCCTGATCACCGGCA CGCCCATCGGCAAATTCATCCGCGCGTCGCTGCCGTTCTACATCGTCCTC TTCGGGATGCTGATCGTGCTGACCTATGTGCCGCAGCTGTCGCTCTGGCT GTCCAACCTGAAATTCGACTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10338:4..825-

>mRNA_C-australica_Contig_10338.1.1 ID=mRNA_C-australica_Contig_10338.1.1|Name=mRNA_C-australica_Contig_10338.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=801bp|location=Sequence derived from alignment at C-australica_Contig_10338:4..825- (Chrysoparadoxa australica CS_1217)
ATGGGGGACGTATCGATCGGGCGGCTGTTTCTTGCAGGCATCGTGCCGGG
CGTGGTGATCTGCGCCGCCATGATGGTCGCCGTGGCGATCCGTGCGCGGC
AGTTGAACCTGCAACCGGCCTATGACCGCCAGATGCCCTGGACGGGCCGC
GCCCGCGCCTTTCGCGGGGCCTTTCTGGCGCTGCTGGTGCCGGTAGGCAC
CGTCCTTGGCATCCGGCTGGGCTATTTCACCCCGACAGAGGCGGGGGCCA
TGGCCGTGCTGTTTGCCGTCATCGTCGGGCTGATCCACGGCGACCTGAAA
GCCGCCCACATCCTGCCAATCCTCGAACAGACCATGCAGGCCACCGCCGT
GATCCTGCTGGTGATCTGCGCCGCCAATGCGTTCGGGTTCTACATGACAT
GGGAACGCATCCCGGCGCAGGTGGCCGAGGCGATGCTATCGCTGACCTCT
GATCCGCTTCTGCTGCTGCTGATCATCAACCTCTTGCTGATCCTTGCGGG
CATGTTCATCGAAGGCTCTGCCGCGCTGATCCTGCTGACGCCGATCCTTG
TACCCGTCATCACCAAACTGGGCGTCGACCCGGTGCATTTCGGCATCGTC
ATGGTGTTCAACCTGACCATCGCCGGGGTCACGCCGCCGCTTGGCACGCT
GATGTTCACCACCTGCCTGATCACCGGCACGCCCATCGGCAAATTCATCC
GCGCGTCGCTGCCGTTCTACATCGTCCTCTTCGGGATGCTGATCGTGCTG
ACCTATGTGCCGCAGCTGTCGCTCTGGCTGTCCAACCTGAAATTCGACTG
A
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