mRNA_C-australica_Contig_10333.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10333.1.1
Unique NamemRNA_C-australica_Contig_10333.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A1F3H6Q1_9BACT (Heparinase n=3 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3H6Q1_9BACT)

HSP 1 Score: 195 bits (495), Expect = 7.810e-56
Identity = 103/184 (55.98%), Postives = 133/184 (72.28%), Query Frame = 1
Query:    1 INLSKIIMFVFLIIAIASCNKDEFE----DIDLSKAGHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            IN   ++    L+   ++C+K+E E    D++ +K GHPRI+LL  EE QIKELI  D   +K+H AI+ E N I+ +  L+RVM GRRLLGTSRELL+R FFLSY YRMT   R+L++AEKE++AV++F+DWNPSHFLDVAEMT G+AIGYDWLF  L  S R  I+ AI  KG+ PS +SKY
Sbjct:    3 INSIILLCLFILLFGGSTCDKNEPETGQTDVENNKTGHPRIMLLEGEEAQIKELIAGDATWKKMHDAIIGECNVIITKPELERVMTGRRLLGTSRELLRRVFFLSYGYRMTANKRYLEKAEKEMLAVSRFTDWNPSHFLDVAEMTMGVAIGYDWLFNGLPDSTRETIKQAIVQKGLNPSKESKY 186          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A355IXN2_9BACT (Heparinase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A355IXN2_9BACT)

HSP 1 Score: 192 bits (488), Expect = 7.740e-55
Identity = 97/173 (56.07%), Postives = 129/173 (74.57%), Query Frame = 1
Query:   16 IIMFVFLIIAIASCNKDEFEDIDLSKAGHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDS 534
            ++ F FLI +  +C K+E E  D  ++ HPRILLL  EE  I++ I      +K+H AI+ E   I+ + P++R+ +GRRLL  SRE L+R F+LSYAYRMTG+D++LQRAEKE++AVA FSDWNPSHFLDVAEMT GMAIGYDWL++ LS+ +R  I++AI +KGI PS DS
Sbjct:    8 LLTFFFLIFSSFACEKNEGETQDEKESSHPRILLLKGEEQLIEQSIAASPVWKKMHDAILVECAYIIAKPPVERIQIGRRLLDKSRECLRRVFYLSYAYRMTGQDKYLQRAEKEMLAVAGFSDWNPSHFLDVAEMTMGMAIGYDWLYDKLSAESRETIKNAILNKGINPSLDS 180          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: UPI001F3C451A (heparinase II/III family protein n=2 Tax=unclassified Maribellus TaxID=2678353 RepID=UPI001F3C451A)

HSP 1 Score: 192 bits (487), Expect = 1.100e-54
Identity = 98/172 (56.98%), Postives = 127/172 (73.84%), Query Frame = 1
Query:   31 FLIIAIASCNKDEFEDI--DLSKAGHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            F++ +   C KD+ E+   +     HPRILLL  EE QIK+LI  D    K+H AI+ E ++IL + P++RV++GRRLL  SRE L+R F+LSYAYRMTG++ +  RAE EL+AVA+FSDWNPSHFLDVAEMT GMAIGYDWL++ L   +R +I +AI SKG+ PSFDSKY
Sbjct:   13 FMLFSSFGCVKDDAENNQGEAKSINHPRILLLKGEEQQIKDLIASDPTWAKMHQAILTECSKILAKSPVERVLIGRRLLDKSRECLRRVFYLSYAYRMTGKEVYFIRAESELLAVAEFSDWNPSHFLDVAEMTMGMAIGYDWLYDKLPEDSREKISEAIVSKGLYPSFDSKY 184          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A2D0N9S0_9BACT (Heparinase n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0N9S0_9BACT)

HSP 1 Score: 187 bits (475), Expect = 5.920e-53
Identity = 91/169 (53.85%), Postives = 127/169 (75.15%), Query Frame = 1
Query:   37 IIAIASCNKD-EFEDIDLSKAGHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            ++ +++C K+     I   +  HP++LLL  EE+QI  LID D   +++H AI++  N+   ++ L+R ++GRRLL  SRE ++R F+LSYAYRMTG++RFL RAE E++AVA FSDWNPSHFLDVAEMT GMAIGYDWL+  L  S+R++IR AI++KG+EPSFD+ Y
Sbjct:   15 LLTLSACKKEASTPPISNDQGNHPQLLLLEGEEEQIHTLIDTDPVWQEVHFAILQACNKFFKKELLERKLIGRRLLSVSRECIRRVFYLSYAYRMTGDERFLARAEAEMLAVAGFSDWNPSHFLDVAEMTMGMAIGYDWLYHDLPESSRTKIRQAIRTKGLEPSFDNNY 183          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A6M0IJR4_9BACT (Heparinase n=1 Tax=Spirosoma agri TaxID=1987381 RepID=A0A6M0IJR4_9BACT)

HSP 1 Score: 181 bits (460), Expect = 9.050e-51
Identity = 90/147 (61.22%), Postives = 116/147 (78.91%), Query Frame = 1
Query:  100 HPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            HPRILLL  EE+ IK  I  D+   K+H AI+ ES+ +L   PL+R+ +GRRLL TSRE L+R FFLSYA+RMT +D++L+RAEKEL+A++ FSDWNP+HFLDVAEMT  ++IGYDWL+  LS S+RS I++AI  KG+EPS DSKY
Sbjct:   37 HPRILLLKGEEEAIKRTIGADKTWDKLHLAILTESDVLLESAPLERIQIGRRLLSTSREALRRLFFLSYAWRMTHQDKYLKRAEKELLALSAFSDWNPTHFLDVAEMTMAVSIGYDWLYNDLSESSRSVIKEAILKKGLEPSLDSKY 183          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A6I6JR38_9BACT (DUF4962 domain-containing protein n=2 Tax=Maribellus TaxID=2678352 RepID=A0A6I6JR38_9BACT)

HSP 1 Score: 181 bits (459), Expect = 1.060e-50
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = 1
Query:   22 MFVFLIIAIASCNKDEFEDIDLSKAGHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            +F+F I  + SC +         K+GHP ILLL  EE  I+  I+  E   K+H AI+ ES  IL  +  +R+ +GRRLLGTSRE L+R F+LSYAYRMTG+DRF +RAEKE+V  A FSDWNPSHFLDV EMT  +AIGYDWLF+ LS  ++  I+ AI  KGIEPSF+  Y
Sbjct:   10 VFIFFIAFLISCQE---------KSGHPGILLLDGEEKSIQNQIESSETWGKVHEAIIGESENILQSELHERIKIGRRLLGTSREYLRRVFYLSYAYRMTGDDRFAKRAEKEMVKAAGFSDWNPSHFLDVGEMTMALAIGYDWLFDELSEESKEIIKKAIVEKGIEPSFNEDY 173          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A3B7MGF7_9BACT (DUF4962 domain-containing protein n=1 Tax=Paraflavitalea soli TaxID=2315862 RepID=A0A3B7MGF7_9BACT)

HSP 1 Score: 181 bits (459), Expect = 1.280e-50
Identity = 89/148 (60.14%), Postives = 113/148 (76.35%), Query Frame = 1
Query:   97 GHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
             HPRILLL  EE  I++ I  D   RK+H AI+ ES+ I+ + P++R+ +GRRLL  SRE ++R FFLSYAYR TG+  + QRAEKE++A+A FSDWNPSHFLDVAEMT  MAIGYDWL++ LS +AR+ I++AI  KGIEPS D KY
Sbjct:   36 AHPRILLLKGEEKAIQKTIAADNNWRKVHQAILTESDAIVNKPPIERIQIGRRLLDKSREAIRRIFFLSYAYRTTGQSVYQQRAEKEMLAIAAFSDWNPSHFLDVAEMTMAMAIGYDWLYDQLSPAARTAIKEAILKKGIEPSLDPKY 183          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: UPI00168BE4E7 (heparinase II/III family protein n=1 Tax=Spirosoma validum TaxID=2771355 RepID=UPI00168BE4E7)

HSP 1 Score: 180 bits (457), Expect = 2.420e-50
Identity = 89/149 (59.73%), Postives = 117/149 (78.52%), Query Frame = 1
Query:   94 AGHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            A HPRILLL + E  I+  ID D+   ++H AI+ E + +L   PL+R+ +GRRLL TSRE L+R FFLSYA+RMT +D++LQR EKEL+AV+ FSDWNP+HFLDVAEMT  ++IGYDWL+ +LS S+RS I+ AI++KGIEPS D+KY
Sbjct:   33 ADHPRILLLKDGEKGIQRTIDSDKTWAQMHQAILTECDALLAVAPLERIQIGRRLLSTSREALRRLFFLSYAWRMTRQDKYLQRGEKELLAVSNFSDWNPTHFLDVAEMTMAVSIGYDWLYPNLSESSRSTIKTAIRTKGIEPSLDTKY 181          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A286FIB6_9BACT (Heparinase II/III-like protein n=1 Tax=Spirosoma fluviale TaxID=1597977 RepID=A0A286FIB6_9BACT)

HSP 1 Score: 180 bits (457), Expect = 2.450e-50
Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 1
Query:   97 GHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            GHPR+LLL+ EED +K  I  D+   K+H AI+ E ++++G +PLKR+ +GRRLL  SRE L+R F+LSYA+RMT +  +LQRAE EL+ +A FSDWNP+HFLDVAEMT  ++IGYDWL+  LS  +RS I++AI  KGIEPS DSKY
Sbjct:   36 GHPRLLLLSGEEDALKRTISADKTWEKLHQAIVAECDQLVGIEPLKRIQIGRRLLDKSREALRRIFYLSYAWRMTHQLNYLQRAETELLTIAAFSDWNPTHFLDVAEMTMAVSIGYDWLYNDLSEQSRSTIKEAILKKGIEPSMDSKY 183          
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Match: A0A7Y1V3Y0_9BACT (Heparinase n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y1V3Y0_9BACT)

HSP 1 Score: 180 bits (456), Expect = 2.980e-50
Identity = 93/180 (51.67%), Postives = 125/180 (69.44%), Query Frame = 1
Query:    7 LSKIIMFVFLIIAIASCNKDEFEDI--DLSKAGHPRILLLANEEDQIKELIDRDEAMRKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMTGEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSSSARSQIRDAIKSKGIEPSFDSKY 540
            + K+I+  F +  +  CNK   +    + +   HP IL+ A+EE  I +LI++D     +HA+I++E NRILG++ LKR MVGRRLL TSRELL R F LSY +RMTG++RF  +A +E++A A F+DWNPSHFLDVAEMT GMAIGYDWL++ LS   R  I  +I  KG+ PS+DS Y
Sbjct:    1 MKKLILLCFSVATLVGCNKSSLDKPAEEHTLVEHPTILMHADEEAIISDLIEKDATWYSLHASILKECNRILGKEVLKRKMVGRRLLATSRELLSRVFQLSYGFRMTGDERFSLKAIEEMLAAAAFTDWNPSHFLDVAEMTMGMAIGYDWLYKELSEEDRKVISGSIAHKGLRPSYDSDY 180          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10333.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3H6Q1_9BACT7.810e-5655.98Heparinase n=3 Tax=Bacteroidetes TaxID=976 RepID=A... [more]
A0A355IXN2_9BACT7.740e-5556.07Heparinase n=2 Tax=Bacteroidetes TaxID=976 RepID=A... [more]
UPI001F3C451A1.100e-5456.98heparinase II/III family protein n=2 Tax=unclassif... [more]
A0A2D0N9S0_9BACT5.920e-5353.85Heparinase n=1 Tax=Flavilitoribacter nigricans DSM... [more]
A0A6M0IJR4_9BACT9.050e-5161.22Heparinase n=1 Tax=Spirosoma agri TaxID=1987381 Re... [more]
A0A6I6JR38_9BACT1.060e-5054.91DUF4962 domain-containing protein n=2 Tax=Maribell... [more]
A0A3B7MGF7_9BACT1.280e-5060.14DUF4962 domain-containing protein n=1 Tax=Paraflav... [more]
UPI00168BE4E72.420e-5059.73heparinase II/III family protein n=1 Tax=Spirosoma... [more]
A0A286FIB6_9BACT2.450e-5058.78Heparinase II/III-like protein n=1 Tax=Spirosoma f... [more]
A0A7Y1V3Y0_9BACT2.980e-5051.67Heparinase n=1 Tax=Saprospiraceae bacterium TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10333contigC-australica_Contig_10333:4..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1089547.KB913013_gene1510
PFAMsDUF4962,Hepar_II_III
Model size540
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.15e-49
EggNOG OGsCOG4225@1|root,COG4225@2|Bacteria,4NF1N@976|Bacteroidetes,47K76@768503|Cytophagia
DescriptionHeparinase II/III-like protein
Cds size519
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586771.3101597-CDS-C-australica_Contig_10333:3..5221682586771.3101597-CDS-C-australica_Contig_10333:3..522Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10333 4..522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586771.3220394-UTR-C-australica_Contig_10333:522..5431682586771.3220394-UTR-C-australica_Contig_10333:522..543Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10333 523..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10333.1.1prot_C-australica_Contig_10333.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10333 4..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10333.1.1

>prot_C-australica_Contig_10333.1.1 ID=prot_C-australica_Contig_10333.1.1|Name=mRNA_C-australica_Contig_10333.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=173bp
MFVFLIIAIASCNKDEFEDIDLSKAGHPRILLLANEEDQIKELIDRDEAM
RKIHAAIMRESNRILGRDPLKRVMVGRRLLGTSRELLKRSFFLSYAYRMT
GEDRFLQRAEKELVAVAQFSDWNPSHFLDVAEMTTGMAIGYDWLFEHLSS
SARSQIRDAIKSKGIEPSFDSKY
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mRNA from alignment at C-australica_Contig_10333:4..543-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10333.1.1 ID=mRNA_C-australica_Contig_10333.1.1|Name=mRNA_C-australica_Contig_10333.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=540bp|location=Sequence derived from alignment at C-australica_Contig_10333:4..543- (Chrysoparadoxa australica CS_1217)
ATAAATCTTTCCAAAATCATCATGTTTGTGTTTTTAATAATTGCTATCGC ATCATGCAATAAAGATGAATTTGAAGATATTGATCTATCTAAAGCAGGCC ATCCTAGAATATTACTATTAGCAAATGAGGAAGATCAGATCAAAGAGCTG ATTGATCGTGATGAAGCTATGCGAAAAATTCATGCTGCAATTATGAGAGA ATCCAATAGAATACTAGGAAGAGATCCTTTGAAAAGAGTCATGGTAGGTA GACGATTACTTGGTACTTCCAGAGAATTGTTGAAACGGTCCTTCTTTCTT TCTTATGCCTATCGAATGACTGGTGAGGATCGATTTCTACAAAGGGCCGA GAAAGAGTTGGTTGCAGTTGCCCAATTCAGTGATTGGAATCCGTCCCACT TTCTGGATGTTGCGGAGATGACAACCGGTATGGCGATTGGATACGACTGG CTTTTCGAGCACCTTAGTAGCAGTGCAAGAAGTCAGATTAGGGATGCCAT AAAAAGTAAGGGTATCGAACCTTCTTTTGATTCAAAATAT
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Coding sequence (CDS) from alignment at C-australica_Contig_10333:4..543-

>mRNA_C-australica_Contig_10333.1.1 ID=mRNA_C-australica_Contig_10333.1.1|Name=mRNA_C-australica_Contig_10333.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=519bp|location=Sequence derived from alignment at C-australica_Contig_10333:4..543- (Chrysoparadoxa australica CS_1217)
ATGTTTGTGTTTTTAATAATTGCTATCGCATCATGCAATAAAGATGAATT
TGAAGATATTGATCTATCTAAAGCAGGCCATCCTAGAATATTACTATTAG
CAAATGAGGAAGATCAGATCAAAGAGCTGATTGATCGTGATGAAGCTATG
CGAAAAATTCATGCTGCAATTATGAGAGAATCCAATAGAATACTAGGAAG
AGATCCTTTGAAAAGAGTCATGGTAGGTAGACGATTACTTGGTACTTCCA
GAGAATTGTTGAAACGGTCCTTCTTTCTTTCTTATGCCTATCGAATGACT
GGTGAGGATCGATTTCTACAAAGGGCCGAGAAAGAGTTGGTTGCAGTTGC
CCAATTCAGTGATTGGAATCCGTCCCACTTTCTGGATGTTGCGGAGATGA
CAACCGGTATGGCGATTGGATACGACTGGCTTTTCGAGCACCTTAGTAGC
AGTGCAAGAAGTCAGATTAGGGATGCCATAAAAAGTAAGGGTATCGAACC
TTCTTTTGATTCAAAATAT
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