mRNA_C-australica_Contig_1033.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1033.3.1
Unique NamemRNA_C-australica_Contig_1033.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1033.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1033contigC-australica_Contig_1033:13246..15599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1269
Hectar predicted targeting categoryother localisation
Exons8
Cds size858
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1033.3.1prot_C-australica_Contig_1033.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1033 13570..15512 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.6089365-UTR-C-australica_Contig_1033:13245..135691682586770.6089365-UTR-C-australica_Contig_1033:13245..13569Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1033 13246..13569 -
1682586770.7083852-UTR-C-australica_Contig_1033:15512..155991682586770.7083852-UTR-C-australica_Contig_1033:15512..15599Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1033 15513..15599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.6202443-CDS-C-australica_Contig_1033:13569..136861682586770.6202443-CDS-C-australica_Contig_1033:13569..13686Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 13570..13686 -
1682586770.630863-CDS-C-australica_Contig_1033:13898..140231682586770.630863-CDS-C-australica_Contig_1033:13898..14023Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 13899..14023 -
1682586770.641004-CDS-C-australica_Contig_1033:14196..142901682586770.641004-CDS-C-australica_Contig_1033:14196..14290Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 14197..14290 -
1682586770.6504576-CDS-C-australica_Contig_1033:14476..146361682586770.6504576-CDS-C-australica_Contig_1033:14476..14636Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 14477..14636 -
1682586770.6662405-CDS-C-australica_Contig_1033:14885..150011682586770.6662405-CDS-C-australica_Contig_1033:14885..15001Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 14886..15001 -
1682586770.6776404-CDS-C-australica_Contig_1033:15073..151461682586770.6776404-CDS-C-australica_Contig_1033:15073..15146Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 15074..15146 -
1682586770.6871593-CDS-C-australica_Contig_1033:15262..153091682586770.6871593-CDS-C-australica_Contig_1033:15262..15309Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 15263..15309 -
1682586770.6982856-CDS-C-australica_Contig_1033:15386..155121682586770.6982856-CDS-C-australica_Contig_1033:15386..15512Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1033 15387..15512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1033.3.1

>prot_C-australica_Contig_1033.3.1 ID=prot_C-australica_Contig_1033.3.1|Name=mRNA_C-australica_Contig_1033.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=286bp
MSDFNSRTKELLTYCNRTALSCIYCKEPKLAAAYYLLQKAYMVASQKLPA
SAGQDQIRQAQNWQASILNNLGCLYFELGGLEGSATWFAKAAKCCRDASP
PLADRIKVNAAMVLLQAGRHRQASILARRALEERAGKEDPAAGSAAEASG
SDGEELPRVGLTLQALQVEADVQEHDGAWLASLQLRDRAVAMSERHLADA
HIITSALQRAALKCSREVRRQDLRLWRRVDDGKKRNSLLHFGRRLGELSE
WSVLEGIESPVDLDDPMPVSFPPEFLKSSPPTMFA*
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mRNA from alignment at C-australica_Contig_1033:13246..15599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1033.3.1 ID=mRNA_C-australica_Contig_1033.3.1|Name=mRNA_C-australica_Contig_1033.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2354bp|location=Sequence derived from alignment at C-australica_Contig_1033:13246..15599- (Chrysoparadoxa australica CS_1217)
GAGAGGAGAAAAACGAAGACATGAGAGCAGGGCCAGCCTGATGTCCCTTT
CATTATGCTTAGTCTGCATCACTAAACGATAAGGGAAATGAGCGACTTCA
ATAGCCGGACTAAGGAGCTCCTCACGTACTGCAATAGAACAGCTCTCAGC
TGCATTTATTGCAAGGAGCCAAAGCTCGCAGCTGCCTACTATCTGCTGCA
GAAAGCTTACATGGTACCCCTCAGCCTCTCTCGTGCTTTTACCTAACACC
ATCCTGCTACATAATCACATGATTCCTCTGTCCTTGGCAGGTTGCATCTC
AGAAGCTTCCAGCCTCAGCCGGGCAGGATCAAATTAGGTGAGTGAGCTTG
CAGCCTGAGCCTCAACATTTCATTTGGCCATAGCTTGCCACAGGCAGCCT
CGAGCTCAACGGCAGTGTTAGCCTACCTCAGCACTGCTATTTGCCCATTG
CAGGCAGGCACAGAACTGGCAGGCCAGCATCCTCAACAACCTTGGTTGCC
TCTATTTTGAGCTAGGAGGGCTTGAGGTAGGGCGTGTTTGAGCCCGCCCA
CCCACCCACTCCCATGTCATATTCCCTTACACCTCCCTTTCGCTGTAGGG
ATCGGCTACATGGTTTGCCAAAGCTGCCAAGTGTTGCAGGGACGCTTCAC
CACCACTTGCAGACAGGATAAAGGTGAATGCGGCAATGGTGTTGCTGCAA
GCTGGCAGGCACAGGTAAGACTAGTAGAGCAATAACTCGACTCAGCCTTT
ATGCCCGTACCGGGCTTGACACTGCAACATGTCTCATGCCGTACAACAGA
AACCAAACTCATCATGATATATTAGCTACCTCTCCATCAATCAACGAATG
GATGTGCTGGGTGCTTAGCTCGCTTTCTGCTGCGATGCATGCCTTTCCCA
TGCTGTGCATCACCTACCTACTCCCTCTCACTCCCGGCATTATCCTCTCA
TCCCACGCGATAGGCAAGCTTCCATCCTAGCCAGGAGGGCTCTGGAGGAG
CGGGCGGGGAAAGAAGATCCAGCTGCGGGGTCAGCTGCCGAGGCCTCAGG
GTCTGATGGGGAGGAGCTTCCTCGCGTGGGACTCACGCTCCAGGCACTTC
AAGTGGAGGCGGATGTGCAAGAGGTAAGCTAACAGAGCACACAAGCCTTC
TCTTTGCGCTAAACATGGTTCACTTCTTTCAGTTTGCTCCTTTGGGAGCT
TTTCTATCAAGCCAGTAGCTTCTAACCTTCCATGATGCTGGCATGCTGCT
CCCCCTAAAGCAAGCAACCTAGCTCATTCACGGGTCTTGGCATCTCCTGC
TCATCTCAGCACGATGGTGCATGGCTGGCCTCCCTGCAGCTCAGGGATCG
TGCAGTGGCGATGAGCGAAAGGCACCTTGCCGATGCCCACATCATCACAT
CAGGTGAAGCTCCTACCCGTACTCCAACCCTTAGAACTAGCTGGCTAATT
CTGACCTCAACCAGTAGTCTAACTGGTTAACCCTAACCCAACCAAACCTA
GCCGAGCCCAGTCAAACAGCCTGCTGCATCTGTTAGCTCAGCTGCTGCTC
TTCTTCTCTTCTTCTCTGGACCTCAGCTCTTCAACGCGCAGCACTCAAAT
GCTCTCGCGAGGTGAGGCGGCAGGACCTGAGGTTGTGGCGGAGAGTTGAT
GATGGCAAGAAAAGGAACTCGCTGCTGCACTTCGGGAGAAGACTGGGGGA
GGTGGAGGACTTATCACTGACCTCGCCGTTGCTTTTCTAAATACCCCACT
AGGATCTGCTCACCTCGATGAAAGGCTGCTTCTGATTTCCTTCCAAGGAA
CTAACTAACCTGATTCTGAGTCACTGAAGGATTGAGATGACATAATAGCT
GGTGCACACCAATCAGTCGTTTGCTCACACAAAGCCCTAAACCCCTTCCC
CTTCCTGCAATAGCTGTCAGAGTGGAGCGTATTGGAAGGCATTGAGAGCC
CAGTGGATCTCGATGACCCCATGCCAGTCTCCTTTCCGCCAGAGTTTCTC
AAGAGCTCTCCCCCAACCATGTTTGCGTGACGCTGGGTCAGTAGCAACGC
TGGGCTGAGGACAACGAAGCATACAGAGAGGCCTCGCTTGACCCTTACTA
TGGCCTCTATGCTGAGCTTTAGCGATAGGATAACTGATAACTGTTGCCAA
GGCACCTGGCGATGAGTGCATGGTAGTCATGCAGCCATTGGGATTCGGGA
TAGAGCAAGTCAATTGAAGTGGCAAGGCTTTAGGTTGGTCAGGCGCCACG
ATGCAGGCAGCTCCATGGCCCGGCTGGAGGAGATTTCATGTCTTTGTCTA
TGAAAACTTGACTATGATGTATATATATTACAAGAAGTGTATGTGCACGA
AAAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1033:13246..15599-

>mRNA_C-australica_Contig_1033.3.1 ID=mRNA_C-australica_Contig_1033.3.1|Name=mRNA_C-australica_Contig_1033.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=858bp|location=Sequence derived from alignment at C-australica_Contig_1033:13246..15599- (Chrysoparadoxa australica CS_1217)
ATGAGCGACTTCAATAGCCGGACTAAGGAGCTCCTCACGTACTGCAATAG
AACAGCTCTCAGCTGCATTTATTGCAAGGAGCCAAAGCTCGCAGCTGCCT
ACTATCTGCTGCAGAAAGCTTACATGGTTGCATCTCAGAAGCTTCCAGCC
TCAGCCGGGCAGGATCAAATTAGGCAGGCACAGAACTGGCAGGCCAGCAT
CCTCAACAACCTTGGTTGCCTCTATTTTGAGCTAGGAGGGCTTGAGGGAT
CGGCTACATGGTTTGCCAAAGCTGCCAAGTGTTGCAGGGACGCTTCACCA
CCACTTGCAGACAGGATAAAGGTGAATGCGGCAATGGTGTTGCTGCAAGC
TGGCAGGCACAGGCAAGCTTCCATCCTAGCCAGGAGGGCTCTGGAGGAGC
GGGCGGGGAAAGAAGATCCAGCTGCGGGGTCAGCTGCCGAGGCCTCAGGG
TCTGATGGGGAGGAGCTTCCTCGCGTGGGACTCACGCTCCAGGCACTTCA
AGTGGAGGCGGATGTGCAAGAGCACGATGGTGCATGGCTGGCCTCCCTGC
AGCTCAGGGATCGTGCAGTGGCGATGAGCGAAAGGCACCTTGCCGATGCC
CACATCATCACATCAGCTCTTCAACGCGCAGCACTCAAATGCTCTCGCGA
GGTGAGGCGGCAGGACCTGAGGTTGTGGCGGAGAGTTGATGATGGCAAGA
AAAGGAACTCGCTGCTGCACTTCGGGAGAAGACTGGGGGAGCTGTCAGAG
TGGAGCGTATTGGAAGGCATTGAGAGCCCAGTGGATCTCGATGACCCCAT
GCCAGTCTCCTTTCCGCCAGAGTTTCTCAAGAGCTCTCCCCCAACCATGT
TTGCGTGA
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