mRNA_C-australica_Contig_10323.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A222E2K0_9RHOB (HTH-type transcriptional regulator LutR n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E2K0_9RHOB)

HSP 1 Score: 399 bits (1025), Expect = 9.930e-140
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1

Query:    1 MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD
Sbjct:    1 MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 211

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A1F8SI98_9CHLR (GntR family transcriptional regulator n=1 Tax=Chloroflexi bacterium RBG_16_72_14 TaxID=1797663 RepID=A0A1F8SI98_9CHLR)

HSP 1 Score: 192 bits (489), Expect = 1.820e-58
Identity = 102/197 (51.78%), Postives = 143/197 (72.59%), Query Frame = 1

Query:   46 VAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDAD-DAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            ++ E+ + LL +LL+GDIKPG+R+P ERKLA ALGVGR+V+RE LKSLT+LGLV+ RQGDG YL+ TESE LP++IEWG++LG K T DL+E+R+ LE  +  LAA R TD+++  L EL+++MR A  D  +F  ADVAFHL + +AA NETL  ++  + SLL+VW  RV+     +   + +H+ ++ AL A D
Sbjct:    1 MSTEIARRLLSYLLAGDIKPGERIPSERKLAVALGVGRSVVREALKSLTLLGLVDVRQGDGTYLRGTESELLPQSIEWGLMLGQKRTRDLVEARRYLEEVLAGLAATRRTDEDLVALAELVEEMRAASADPDRFVAADVAFHLRVTRAAGNETLGGVIRGIRSLLQVWISRVMHSADSYAPSVAEHAAVLAALEAGD 197

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: UPI001F3F8845 (FadR family transcriptional regulator n=1 Tax=Spiractinospora alimapuensis TaxID=2820884 RepID=UPI001F3F8845)

HSP 1 Score: 185 bits (469), Expect = 3.940e-55
Identity = 98/193 (50.78%), Postives = 131/193 (67.88%), Query Frame = 1

Query:   43 SVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEAL 621
            S   E+   L+  +L+GDI PG +LPPER+LAE LGVGR+ +RE LK+L +LGL+E RQGDG YL    S  LP+ +EWGMLLG   T DLIE+R  LE+ + RLAAERITD E   L   + +M  A+ AA FARAD  FHL I  AARN+ L  I++++ SLL VW  RV+ +  + + +I+QH  I++A+
Sbjct:   25 SAVSEIVSQLVSRILAGDIPPGGKLPPERRLAENLGVGRSAIREALKALDLLGLIEIRQGDGTYLSQGTSSLLPQVVEWGMLLGTPQTLDLIETRSHLEVILARLAAERITDDEASALRTCLTRMGFAESAADFARADTEFHLTIAAAARNQVLSDILSSIKSLLHVWVLRVIRQTGERESVIEQHQAILDAV 217

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A4Q9DEU8_9BACL (FadR family transcriptional regulator n=1 Tax=Paenibacillus thalictri TaxID=2527873 RepID=A0A4Q9DEU8_9BACL)

HSP 1 Score: 182 bits (462), Expect = 3.540e-54
Identity = 98/209 (46.89%), Postives = 143/209 (68.42%), Query Frame = 1

Query:   10 KIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAK-FARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            K  PIE++   ++  E+TKNLL +LLSG +KPGD++P ER L+EALGVGR+ LRE LK+LTVLGL+E RQGDG YLK  +S+ LP+ IEWG+LLG K T  LIE+R+ +EL +  +AAER  + E+ +L +++++MR++   +K F  ADVAFHL + + A N  L  I++++ +LL+ W R V+    +     D+H  I  A+   D
Sbjct:   10 KFNPIERK---TIVTEITKNLLDYLLSGQVKPGDKIPTERSLSEALGVGRSSLREALKALTVLGLLEVRQGDGTYLKRADSDLLPQVIEWGLLLGEKQTLHLIEAREKIELMLAGMAAERRQENEVLELKQILERMRNSTGNSKEFVEADVAFHLKLAEMANNTVLRDILSSIQALLRAWIRSVIEAAGNAQFSYDEHLPIYLAVEKGD 215

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A8I1S6T0_9ACTN (FadR family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A8I1S6T0_9ACTN)

HSP 1 Score: 181 bits (460), Expect = 5.110e-54
Identity = 95/207 (45.89%), Postives = 135/207 (65.22%), Query Frame = 1

Query:   13 IKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            +KP+E +R+ +   E+ + LL +LLSG  +PG RLP ER LA  L VGR+V+RE LKSL +LG+VE RQGDG +L++ ES+ LP  IEWG+LLG + T DLIE R+ +E+    LAAER  ++ + K+   +D M  A +   F  AD+ FHL I  AA N  LLQIM ++ +LL+VW  + +    D   + D+H  +VEA++A D
Sbjct:    1 MKPLEVERREATTTEIARRLLRYLLSGAFEPGHRLPSERTLASELAVGRSVIREALKSLVLLGIVEVRQGDGTFLRSAESDLLPNVIEWGLLLGTRSTRDLIEIRRYMEVLTAGLAAERRDERALEKMWSELDAMYAASNPTAFVAADIGFHLAIAAAAGNGVLLQIMTSVRTLLRVWITKNVENLDDTKSIADEHKPVVEAIQAGD 207

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A3L7A316_9MICO (FadR family transcriptional regulator n=1 Tax=Mycetocola tolaasinivorans TaxID=76635 RepID=A0A3L7A316_9MICO)

HSP 1 Score: 180 bits (457), Expect = 2.010e-53
Identity = 92/200 (46.00%), Postives = 140/200 (70.00%), Query Frame = 1

Query:   34 RQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            R+ SV+V V++ L    LSG++ PG +LPPER LAEALGVGR+ +RE LK+L +LGL+E RQGDG YL+++ S  LP+ +EWG++LG+  T++L+E+R  LE+++  LAAER + +EI ++      M +ADD A FARAD+ FHL +  AA N  L  +++N+ SLL+VW  R + +  +    +DQH+ +++A+ A D
Sbjct:   20 RESSVSVLVSQ-LASRFLSGEVVPGGKLPPERALAEALGVGRSAVREALKALDLLGLIEIRQGDGTYLRSSASSLLPQVVEWGLMLGSTQTDELVEARYHLEITLAGLAAERASAEEIAEITRWFQAMGEADDVADFARADIEFHLAVAAAAHNGVLAGVLSNVKSLLEVWVVRAIRQSGERASTLDQHAAVLQAITAGD 218

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A1M4Y848_9BACL (GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex n=1 Tax=Seinonella peptonophila TaxID=112248 RepID=A0A1M4Y848_9BACL)

HSP 1 Score: 178 bits (452), Expect = 9.570e-53
Identity = 96/203 (47.29%), Postives = 140/203 (68.97%), Query Frame = 1

Query:   28 QQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDAD-DAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            ++R+P +A+E+T  ++ +L SG + PGDRLP ER+LA+ LGVGR+V+R+ LKSL++LG++E RQGDG Y ++  SE LPR IEWG+LLG K   DL E R  +E++IV+LAAER   + I +L  L++ M++A  D   FA AD+ FH+ I KA++N  L  I+++M SLL  W +RV+A   D     D+H  I EA++  D
Sbjct:    9 KKREP-LALEITNQIIEYLQSGKVNPGDRLPSERQLAQNLGVGRSVVRDALKSLSLLGILEIRQGDGTYFQSISSELLPRTIEWGLLLGKKRVLDLAECRHYIEIAIVKLAAERRDQQTIEELSALLETMKNARFDTETFAEADLQFHMKIAKASQNTALHDILSSMRSLLDFWIKRVIAAAGDSQYSYDRHLAIFEAIKEGD 210

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A840P7I5_9ACTN (DNA-binding FadR family transcriptional regulator n=2 Tax=Thermocatellispora tengchongensis TaxID=1073253 RepID=A0A840P7I5_9ACTN)

HSP 1 Score: 178 bits (451), Expect = 1.770e-52
Identity = 92/199 (46.23%), Postives = 134/199 (67.34%), Query Frame = 1

Query:   34 RQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAH 630
            ++ S  V++ + LL  LLSG + PG RLP ER+L+E+LGVGR+ +RE LK+L VLG+++ RQGDG YLK + S  LP AIEWG++LG     DLIE+R+ +E+ I  LAAER  ++ I +L   ++ MR A D+  F  ADVAFHL + +AA N  L  I+ ++ SLL+VW RR + E  + +  I +H+ ++EA+  H
Sbjct:   25 QRESAVVDIARQLLSQLLSGHLAPGTRLPSERQLSESLGVGRSTIREALKALDVLGIIDVRQGDGTYLKQSTSSLLPSAIEWGLMLGQPQVLDLIEARRHIEIVIAELAAERAGEEVIAELRHHLEDMRSAADSVAFVEADVAFHLALAQAADNSVLNDILGSIRSLLRVWIRRAIHEAGETETTIAEHAAVLEAVERH 223

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A7W0TWM6_9CHLR (FadR family transcriptional regulator n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TWM6_9CHLR)

HSP 1 Score: 177 bits (450), Expect = 3.750e-52
Identity = 99/215 (46.05%), Postives = 142/215 (66.05%), Query Frame = 1

Query:    1 MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADD----AAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            M+G +  IE  R+  +A+E+ + L+ +LLSG+I PG R+P ER+LAEA GVGR+ +RE +KSL++LGLV+ R GDG YL+  ++  LP+ IEWG+LLG   T DL+E+RQ +E  I  LAAER TD ++ +L  L+ +M  A +    AA F  ADVAFHL + +AARN  L  ++  + +LL+VW  RV+A   D D    +H  I+EA+   D
Sbjct:    1 MSGLLAGIEPIRREPIAIEIARRLVDYLLSGEIGPGQRMPSERQLAEAFGVGRSAMREAIKSLSLLGLVDVRHGDGTYLRKADASLLPQVIEWGLLLGEPRTRDLVEARQKIEEVIAALAAERRTDDDVGELRVLLARMETAAEPEVAAAVFVEADVAFHLRLAEAARNTALRDVLGGIQALLRVWISRVIAAG-DRDVSYREHVPILEAVERGD 214

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BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A1H7B463_9MICC (GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex n=3 Tax=Arthrobacter TaxID=1663 RepID=A0A1H7B463_9MICC)

HSP 1 Score: 177 bits (449), Expect = 5.310e-52
Identity = 90/207 (43.48%), Postives = 134/207 (64.73%), Query Frame = 1

Query:   13 IKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633
            +KP+        + EV K LL ++ SG + PG++LP ER+L+E+ GVGR+V+REG+KSL +LGLVE R G G +L+   SE LPR IEWG++LG + T+DL+E+RQ +E     LAA R TD +++++ + +D M DA    +F  ADV FHL +  A+ N  L  ++ N+ +LL+VW  RV+  E  FD    +H+ + EA+ A D
Sbjct:   31 LKPVSVVHAEPASSEVAKALLDYIFSGQVAPGEKLPSERQLSESFGVGRSVVREGIKSLGLLGLVEFRHGGGTFLRNANSELLPRVIEWGLMLGERRTSDLVEARQHIERVTAGLAATRRTDADLKRIKKALDAMGDAKTTEEFVSADVDFHLAVADASGNTVLANMLKNIAALLRVWIHRVMDAETSFDGSHAEHTPVYEAILAGD 237

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A222E2K0_9RHOB	9.930e-140	100.00	HTH-type transcriptional regulator LutR n=2 Tax=Ro...	[more]
A0A1F8SI98_9CHLR	1.820e-58	51.78	GntR family transcriptional regulator n=1 Tax=Chlo...	[more]
UPI001F3F8845	3.940e-55	50.78	FadR family transcriptional regulator n=1 Tax=Spir...	[more]
A0A4Q9DEU8_9BACL	3.540e-54	46.89	FadR family transcriptional regulator n=1 Tax=Paen...	[more]
A0A8I1S6T0_9ACTN	5.110e-54	45.89	FadR family transcriptional regulator n=1 Tax=Acti...	[more]
A0A3L7A316_9MICO	2.010e-53	46.00	FadR family transcriptional regulator n=1 Tax=Myce...	[more]
A0A1M4Y848_9BACL	9.570e-53	47.29	GntR family transcriptional regulator, transcripti...	[more]
A0A840P7I5_9ACTN	1.770e-52	46.23	DNA-binding FadR family transcriptional regulator ...	[more]
A0A7W0TWM6_9CHLR	3.750e-52	46.05	FadR family transcriptional regulator n=1 Tax=Chlo...	[more]
A0A1H7B463_9MICC	5.310e-52	43.48	GntR family transcriptional regulator, transcripti...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10323:193..825+
coding sequence from alignment at C-australica_Contig_10323:193..825+

protein sequence of mRNA_C-australica_Contig_10323.1.1

>prot_C-australica_Contig_10323.1.1 ID=prot_C-australica_Contig_10323.1.1|Name=mRNA_C-australica_Contig_10323.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=211bp
MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALG
VGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAK
VTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFAR
ADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQH
SGIVEALRAHD

mRNA from alignment at C-australica_Contig_10323:193..825+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10323.1.1 ID=mRNA_C-australica_Contig_10323.1.1|Name=mRNA_C-australica_Contig_10323.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=633bp|location=Sequence derived from alignment at C-australica_Contig_10323:193..825+ (Chrysoparadoxa australica CS_1217)
ATGGCCGGCAAGATCAAACCAATAGAACAACAGCGGCAGCCGTCAGTTGC
CGTGGAAGTCACCAAGAACCTTTTGGGCTTTCTGCTTTCGGGCGATATCA
AGCCAGGTGACCGGCTTCCTCCTGAGCGCAAGCTGGCCGAGGCTCTTGGC
GTCGGGCGCACGGTTCTACGCGAGGGGTTGAAATCTCTCACTGTGCTTGG
CTTGGTCGAGGGTCGGCAGGGAGATGGAAACTACTTGAAGGCGACCGAGT
CAGAGTTCCTTCCGCGGGCAATAGAGTGGGGTATGTTGCTCGGGGCCAAG
GTGACCAACGACCTGATCGAAAGCCGCCAAGTTCTTGAACTCTCGATTGT
CCGCTTGGCAGCAGAGCGTATTACGGACAAGGAAATCCGGAAGCTTGATG
AGCTTATGGACAAGATGCGCGACGCCGACGATGCGGCCAAGTTCGCACGC
GCAGACGTCGCCTTCCACCTAGTGATCGTGAAGGCTGCCAGAAATGAAAC
ATTGCTGCAGATCATGAACAACATGCTCTCACTGCTTAAGGTCTGGACAA
GGCGGGTCTTGGCAGAAGAAGTCGATTTCGACGAGCTGATCGATCAACAT
TCCGGGATTGTGGAAGCTCTGCGCGCGCATGAT

Coding sequence (CDS) from alignment at C-australica_Contig_10323:193..825+

>mRNA_C-australica_Contig_10323.1.1 ID=mRNA_C-australica_Contig_10323.1.1|Name=mRNA_C-australica_Contig_10323.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=633bp|location=Sequence derived from alignment at C-australica_Contig_10323:193..825+ (Chrysoparadoxa australica CS_1217)
ATGGCCGGCAAGATCAAACCAATAGAACAACAGCGGCAGCCGTCAGTTGC
CGTGGAAGTCACCAAGAACCTTTTGGGCTTTCTGCTTTCGGGCGATATCA
AGCCAGGTGACCGGCTTCCTCCTGAGCGCAAGCTGGCCGAGGCTCTTGGC
GTCGGGCGCACGGTTCTACGCGAGGGGTTGAAATCTCTCACTGTGCTTGG
CTTGGTCGAGGGTCGGCAGGGAGATGGAAACTACTTGAAGGCGACCGAGT
CAGAGTTCCTTCCGCGGGCAATAGAGTGGGGTATGTTGCTCGGGGCCAAG
GTGACCAACGACCTGATCGAAAGCCGCCAAGTTCTTGAACTCTCGATTGT
CCGCTTGGCAGCAGAGCGTATTACGGACAAGGAAATCCGGAAGCTTGATG
AGCTTATGGACAAGATGCGCGACGCCGACGATGCGGCCAAGTTCGCACGC
GCAGACGTCGCCTTCCACCTAGTGATCGTGAAGGCTGCCAGAAATGAAAC
ATTGCTGCAGATCATGAACAACATGCTCTCACTGCTTAAGGTCTGGACAA
GGCGGGTCTTGGCAGAAGAAGTCGATTTCGACGAGCTGATCGATCAACAT
TCCGGGATTGTGGAAGCTCTGCGCGCGCATGAT