mRNA_C-australica_Contig_10323.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A222E2K0_9RHOB (HTH-type transcriptional regulator LutR n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E2K0_9RHOB) HSP 1 Score: 399 bits (1025), Expect = 9.930e-140 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1 Query: 1 MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD Sbjct: 1 MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 211
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A1F8SI98_9CHLR (GntR family transcriptional regulator n=1 Tax=Chloroflexi bacterium RBG_16_72_14 TaxID=1797663 RepID=A0A1F8SI98_9CHLR) HSP 1 Score: 192 bits (489), Expect = 1.820e-58 Identity = 102/197 (51.78%), Postives = 143/197 (72.59%), Query Frame = 1 Query: 46 VAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDAD-DAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 ++ E+ + LL +LL+GDIKPG+R+P ERKLA ALGVGR+V+RE LKSLT+LGLV+ RQGDG YL+ TESE LP++IEWG++LG K T DL+E+R+ LE + LAA R TD+++ L EL+++MR A D +F ADVAFHL + +AA NETL ++ + SLL+VW RV+ + + +H+ ++ AL A D Sbjct: 1 MSTEIARRLLSYLLAGDIKPGERIPSERKLAVALGVGRSVVREALKSLTLLGLVDVRQGDGTYLRGTESELLPQSIEWGLMLGQKRTRDLVEARRYLEEVLAGLAATRRTDEDLVALAELVEEMRAASADPDRFVAADVAFHLRVTRAAGNETLGGVIRGIRSLLQVWISRVMHSADSYAPSVAEHAAVLAALEAGD 197
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: UPI001F3F8845 (FadR family transcriptional regulator n=1 Tax=Spiractinospora alimapuensis TaxID=2820884 RepID=UPI001F3F8845) HSP 1 Score: 185 bits (469), Expect = 3.940e-55 Identity = 98/193 (50.78%), Postives = 131/193 (67.88%), Query Frame = 1 Query: 43 SVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEAL 621 S E+ L+ +L+GDI PG +LPPER+LAE LGVGR+ +RE LK+L +LGL+E RQGDG YL S LP+ +EWGMLLG T DLIE+R LE+ + RLAAERITD E L + +M A+ AA FARAD FHL I AARN+ L I++++ SLL VW RV+ + + + +I+QH I++A+ Sbjct: 25 SAVSEIVSQLVSRILAGDIPPGGKLPPERRLAENLGVGRSAIREALKALDLLGLIEIRQGDGTYLSQGTSSLLPQVVEWGMLLGTPQTLDLIETRSHLEVILARLAAERITDDEASALRTCLTRMGFAESAADFARADTEFHLTIAAAARNQVLSDILSSIKSLLHVWVLRVIRQTGERESVIEQHQAILDAV 217
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A4Q9DEU8_9BACL (FadR family transcriptional regulator n=1 Tax=Paenibacillus thalictri TaxID=2527873 RepID=A0A4Q9DEU8_9BACL) HSP 1 Score: 182 bits (462), Expect = 3.540e-54 Identity = 98/209 (46.89%), Postives = 143/209 (68.42%), Query Frame = 1 Query: 10 KIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAK-FARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 K PIE++ ++ E+TKNLL +LLSG +KPGD++P ER L+EALGVGR+ LRE LK+LTVLGL+E RQGDG YLK +S+ LP+ IEWG+LLG K T LIE+R+ +EL + +AAER + E+ +L +++++MR++ +K F ADVAFHL + + A N L I++++ +LL+ W R V+ + D+H I A+ D Sbjct: 10 KFNPIERK---TIVTEITKNLLDYLLSGQVKPGDKIPTERSLSEALGVGRSSLREALKALTVLGLLEVRQGDGTYLKRADSDLLPQVIEWGLLLGEKQTLHLIEAREKIELMLAGMAAERRQENEVLELKQILERMRNSTGNSKEFVEADVAFHLKLAEMANNTVLRDILSSIQALLRAWIRSVIEAAGNAQFSYDEHLPIYLAVEKGD 215
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A8I1S6T0_9ACTN (FadR family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A8I1S6T0_9ACTN) HSP 1 Score: 181 bits (460), Expect = 5.110e-54 Identity = 95/207 (45.89%), Postives = 135/207 (65.22%), Query Frame = 1 Query: 13 IKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 +KP+E +R+ + E+ + LL +LLSG +PG RLP ER LA L VGR+V+RE LKSL +LG+VE RQGDG +L++ ES+ LP IEWG+LLG + T DLIE R+ +E+ LAAER ++ + K+ +D M A + F AD+ FHL I AA N LLQIM ++ +LL+VW + + D + D+H +VEA++A D Sbjct: 1 MKPLEVERREATTTEIARRLLRYLLSGAFEPGHRLPSERTLASELAVGRSVIREALKSLVLLGIVEVRQGDGTFLRSAESDLLPNVIEWGLLLGTRSTRDLIEIRRYMEVLTAGLAAERRDERALEKMWSELDAMYAASNPTAFVAADIGFHLAIAAAAGNGVLLQIMTSVRTLLRVWITKNVENLDDTKSIADEHKPVVEAIQAGD 207
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A3L7A316_9MICO (FadR family transcriptional regulator n=1 Tax=Mycetocola tolaasinivorans TaxID=76635 RepID=A0A3L7A316_9MICO) HSP 1 Score: 180 bits (457), Expect = 2.010e-53 Identity = 92/200 (46.00%), Postives = 140/200 (70.00%), Query Frame = 1 Query: 34 RQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 R+ SV+V V++ L LSG++ PG +LPPER LAEALGVGR+ +RE LK+L +LGL+E RQGDG YL+++ S LP+ +EWG++LG+ T++L+E+R LE+++ LAAER + +EI ++ M +ADD A FARAD+ FHL + AA N L +++N+ SLL+VW R + + + +DQH+ +++A+ A D Sbjct: 20 RESSVSVLVSQ-LASRFLSGEVVPGGKLPPERALAEALGVGRSAVREALKALDLLGLIEIRQGDGTYLRSSASSLLPQVVEWGLMLGSTQTDELVEARYHLEITLAGLAAERASAEEIAEITRWFQAMGEADDVADFARADIEFHLAVAAAAHNGVLAGVLSNVKSLLEVWVVRAIRQSGERASTLDQHAAVLQAITAGD 218
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A1M4Y848_9BACL (GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex n=1 Tax=Seinonella peptonophila TaxID=112248 RepID=A0A1M4Y848_9BACL) HSP 1 Score: 178 bits (452), Expect = 9.570e-53 Identity = 96/203 (47.29%), Postives = 140/203 (68.97%), Query Frame = 1 Query: 28 QQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDAD-DAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 ++R+P +A+E+T ++ +L SG + PGDRLP ER+LA+ LGVGR+V+R+ LKSL++LG++E RQGDG Y ++ SE LPR IEWG+LLG K DL E R +E++IV+LAAER + I +L L++ M++A D FA AD+ FH+ I KA++N L I+++M SLL W +RV+A D D+H I EA++ D Sbjct: 9 KKREP-LALEITNQIIEYLQSGKVNPGDRLPSERQLAQNLGVGRSVVRDALKSLSLLGILEIRQGDGTYFQSISSELLPRTIEWGLLLGKKRVLDLAECRHYIEIAIVKLAAERRDQQTIEELSALLETMKNARFDTETFAEADLQFHMKIAKASQNTALHDILSSMRSLLDFWIKRVIAAAGDSQYSYDRHLAIFEAIKEGD 210
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A840P7I5_9ACTN (DNA-binding FadR family transcriptional regulator n=2 Tax=Thermocatellispora tengchongensis TaxID=1073253 RepID=A0A840P7I5_9ACTN) HSP 1 Score: 178 bits (451), Expect = 1.770e-52 Identity = 92/199 (46.23%), Postives = 134/199 (67.34%), Query Frame = 1 Query: 34 RQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAH 630 ++ S V++ + LL LLSG + PG RLP ER+L+E+LGVGR+ +RE LK+L VLG+++ RQGDG YLK + S LP AIEWG++LG DLIE+R+ +E+ I LAAER ++ I +L ++ MR A D+ F ADVAFHL + +AA N L I+ ++ SLL+VW RR + E + + I +H+ ++EA+ H Sbjct: 25 QRESAVVDIARQLLSQLLSGHLAPGTRLPSERQLSESLGVGRSTIREALKALDVLGIIDVRQGDGTYLKQSTSSLLPSAIEWGLMLGQPQVLDLIEARRHIEIVIAELAAERAGEEVIAELRHHLEDMRSAADSVAFVEADVAFHLALAQAADNSVLNDILGSIRSLLRVWIRRAIHEAGETETTIAEHAAVLEAVERH 223
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A7W0TWM6_9CHLR (FadR family transcriptional regulator n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TWM6_9CHLR) HSP 1 Score: 177 bits (450), Expect = 3.750e-52 Identity = 99/215 (46.05%), Postives = 142/215 (66.05%), Query Frame = 1 Query: 1 MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADD----AAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 M+G + IE R+ +A+E+ + L+ +LLSG+I PG R+P ER+LAEA GVGR+ +RE +KSL++LGLV+ R GDG YL+ ++ LP+ IEWG+LLG T DL+E+RQ +E I LAAER TD ++ +L L+ +M A + AA F ADVAFHL + +AARN L ++ + +LL+VW RV+A D D +H I+EA+ D Sbjct: 1 MSGLLAGIEPIRREPIAIEIARRLVDYLLSGEIGPGQRMPSERQLAEAFGVGRSAMREAIKSLSLLGLVDVRHGDGTYLRKADASLLPQVIEWGLLLGEPRTRDLVEARQKIEEVIAALAAERRTDDDVGELRVLLARMETAAEPEVAAAVFVEADVAFHLRLAEAARNTALRDVLGGIQALLRVWISRVIAAG-DRDVSYREHVPILEAVERGD 214
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Match: A0A1H7B463_9MICC (GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex n=3 Tax=Arthrobacter TaxID=1663 RepID=A0A1H7B463_9MICC) HSP 1 Score: 177 bits (449), Expect = 5.310e-52 Identity = 90/207 (43.48%), Postives = 134/207 (64.73%), Query Frame = 1 Query: 13 IKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGVGRTVLREGLKSLTVLGLVEGRQGDGNYLKATESEFLPRAIEWGMLLGAKVTNDLIESRQVLELSIVRLAAERITDKEIRKLDELMDKMRDADDAAKFARADVAFHLVIVKAARNETLLQIMNNMLSLLKVWTRRVLAEEVDFDELIDQHSGIVEALRAHD 633 +KP+ + EV K LL ++ SG + PG++LP ER+L+E+ GVGR+V+REG+KSL +LGLVE R G G +L+ SE LPR IEWG++LG + T+DL+E+RQ +E LAA R TD +++++ + +D M DA +F ADV FHL + A+ N L ++ N+ +LL+VW RV+ E FD +H+ + EA+ A D Sbjct: 31 LKPVSVVHAEPASSEVAKALLDYIFSGQVAPGEKLPSERQLSESFGVGRSVVREGIKSLGLLGLVEFRHGGGTFLRNANSELLPRVIEWGLMLGERRTSDLVEARQHIERVTAGLAATRRTDADLKRIKKALDAMGDAKTTEEFVSADVDFHLAVADASGNTVLANMLKNIAALLRVWIHRVMDAETSFDGSHAEHTPVYEAILAGD 237 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10323.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10323.1.1 >prot_C-australica_Contig_10323.1.1 ID=prot_C-australica_Contig_10323.1.1|Name=mRNA_C-australica_Contig_10323.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=211bp MAGKIKPIEQQRQPSVAVEVTKNLLGFLLSGDIKPGDRLPPERKLAEALGback to top mRNA from alignment at C-australica_Contig_10323:193..825+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10323.1.1 ID=mRNA_C-australica_Contig_10323.1.1|Name=mRNA_C-australica_Contig_10323.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=633bp|location=Sequence derived from alignment at C-australica_Contig_10323:193..825+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10323:193..825+ >mRNA_C-australica_Contig_10323.1.1 ID=mRNA_C-australica_Contig_10323.1.1|Name=mRNA_C-australica_Contig_10323.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=633bp|location=Sequence derived from alignment at C-australica_Contig_10323:193..825+ (Chrysoparadoxa australica CS_1217)back to top |