Homology
BLAST of mRNA_C-australica_Contig_10322.1.1 vs. uniprot
Match: A0A2E2AYB4_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2AYB4_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 5.560e-14 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1 Query: 1 DNFNVEQSYYNKWYGDQLIYRRPKPKPEIAPLASDSAVPDVEPVDPAEFQDGGEQNLIPDT-----ESENN 198
D+FNVEQ+YYNKW+G+QL+Y+ PKPKP + PLA DSA D VDP+ D +N + D+ E +NN
Sbjct: 131 DDFNVEQAYYNKWFGEQLVYKEPKPKPPVEPLAKDSAAMDAGVVDPSNLSD---ENAVDDSGGPLEEEQNN 198
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 354 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 354 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586770.4203515-CDS-C-australica_Contig_10322:4..358 | 1682586770.4203515-CDS-C-australica_Contig_10322:4..358 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_10322 5..358 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10322.1.1 >prot_C-australica_Contig_10322.1.1 ID=prot_C-australica_Contig_10322.1.1|Name=mRNA_C-australica_Contig_10322.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=118bp
DNFNVEQSYYNKWYGDQLIYRRPKPKPEIAPLASDSAVPDVEPVDPAEFQ
DGGEQNLIPDTESENNTDSDNNADAIIPVEPDVPETQPQEEEQPVEQAPP
PPAEEPVIEGQDDGLGF* back to topmRNA from alignment at C-australica_Contig_10322:5..358+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_10322.1.1 ID=mRNA_C-australica_Contig_10322.1.1|Name=mRNA_C-australica_Contig_10322.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=354bp|location=Sequence derived from alignment at C-australica_Contig_10322:5..358+ (Chrysoparadoxa australica CS_1217)
GATAATTTTAATGTGGAGCAATCCTATTATAATAAATGGTATGGAGATCA
GCTTATCTATAGAAGGCCAAAACCCAAACCTGAAATAGCTCCTCTTGCCA
GTGACAGTGCGGTGCCAGATGTAGAACCAGTTGATCCTGCTGAATTTCAG
GATGGTGGTGAGCAAAATTTAATTCCGGATACAGAATCTGAAAATAACAC
TGACTCTGACAACAACGCCGATGCCATAATCCCGGTGGAGCCTGATGTGC
CGGAAACACAACCTCAGGAAGAAGAACAACCAGTTGAACAAGCACCACCG
CCTCCTGCGGAAGAGCCCGTTATTGAAGGTCAGGACGATGGACTTGGTTT
CTAA back to topCoding sequence (CDS) from alignment at C-australica_Contig_10322:5..358+ >mRNA_C-australica_Contig_10322.1.1 ID=mRNA_C-australica_Contig_10322.1.1|Name=mRNA_C-australica_Contig_10322.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=354bp|location=Sequence derived from alignment at C-australica_Contig_10322:5..358+ (Chrysoparadoxa australica CS_1217)
GATAATTTTAATGTGGAGCAATCCTATTATAATAAATGGTATGGAGATCA
GCTTATCTATAGAAGGCCAAAACCCAAACCTGAAATAGCTCCTCTTGCCA
GTGACAGTGCGGTGCCAGATGTAGAACCAGTTGATCCTGCTGAATTTCAG
GATGGTGGTGAGCAAAATTTAATTCCGGATACAGAATCTGAAAATAACAC
TGACTCTGACAACAACGCCGATGCCATAATCCCGGTGGAGCCTGATGTGC
CGGAAACACAACCTCAGGAAGAAGAACAACCAGTTGAACAAGCACCACCG
CCTCCTGCGGAAGAGCCCGTTATTGAAGGTCAGGACGATGGACTTGGTTT
CTAA back to top
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