mRNA_C-australica_Contig_1032.8.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1032.8.1
Unique NamemRNA_C-australica_Contig_1032.8.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1032contigC-australica_Contig_1032:13415..14192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size647
Hectar predicted targeting categoryother localisation
Exons2
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.8953993-CDS-C-australica_Contig_1032:13414..135201682586769.8953993-CDS-C-australica_Contig_1032:13414..13520Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 13415..13520 +
1682586769.908212-CDS-C-australica_Contig_1032:13651..141901682586769.908212-CDS-C-australica_Contig_1032:13651..14190Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 13652..14190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1032.8.1prot_C-australica_Contig_1032.8.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1032 13415..14190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1032.8.1

>prot_C-australica_Contig_1032.8.1 ID=prot_C-australica_Contig_1032.8.1|Name=mRNA_C-australica_Contig_1032.8.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=215bp
GGLKSQLQSRLTTLLLEGEEGGVVGVGLPEGEKADGAEGEAGTPRGNVSK
VSGVNADRVDGDDDGEGDGEVELQHQEAGMELDIEGMTVSELREQLHERG
YAVAGRKADLQQRLRDVLVTVPAAATATEATPPGSDADEPDADEAAAEHE
APPAAAIGGARRASRALMGFIFGSSQPADADAGPGEMSEDEQEPHPASPT
AASDASRSVNEDAMA
back to top

mRNA from alignment at C-australica_Contig_1032:13415..14192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1032.8.1 ID=mRNA_C-australica_Contig_1032.8.1|Name=mRNA_C-australica_Contig_1032.8.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=778bp|location=Sequence derived from alignment at C-australica_Contig_1032:13415..14192+ (Chrysoparadoxa australica CS_1217)
GGGGGGCTCAAGTCACAGCTGCAGAGCAGACTTACCACCCTGCTGTTGGA
GGGTGAGGAGGGTGGTGTGGTAGGAGTTGGGTTGCCAGAGGGTGAAAAAG
CTGATGGTGAGTGAGCATTAGTTCCCATAGGCCTGGCATTTGGCCTCGCA
TTTATACTTTGAGTACTCTGAGCCTGACCCCACCCCTGCCCTGCTTATGT
CAAGCTAACCTTAGCTTTTGGTTCTCTGGGCATACAGGCGCTGAAGGGGA
GGCGGGGACTCCAAGGGGTAACGTCAGTAAGGTCTCTGGTGTGAATGCGG
ATAGGGTTGATGGGGATGATGATGGAGAAGGGGATGGTGAGGTTGAGCTG
CAGCATCAGGAGGCAGGCATGGAGCTGGACATTGAAGGCATGACTGTCTC
TGAGCTACGGGAGCAGTTGCACGAGAGAGGCTACGCAGTGGCAGGCAGGA
AAGCTGACCTCCAGCAGCGCCTCAGGGATGTGCTAGTGACTGTGCCTGCA
GCAGCAACTGCAACTGAGGCGACCCCTCCTGGATCGGATGCCGATGAGCC
TGACGCCGATGAGGCGGCTGCAGAGCATGAGGCTCCGCCAGCAGCAGCCA
TAGGTGGTGCGAGAAGGGCCTCGCGAGCTCTTATGGGCTTTATTTTTGGC
AGCTCCCAGCCAGCCGATGCTGATGCAGGGCCAGGTGAGATGAGTGAAGA
CGAGCAGGAGCCTCACCCTGCCAGCCCCACAGCTGCCTCGGATGCTTCTC
GTTCGGTGAACGAGGATGCCATGGCAGT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1032:13415..14192+

>mRNA_C-australica_Contig_1032.8.1 ID=mRNA_C-australica_Contig_1032.8.1|Name=mRNA_C-australica_Contig_1032.8.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=645bp|location=Sequence derived from alignment at C-australica_Contig_1032:13415..14192+ (Chrysoparadoxa australica CS_1217)
GGGGGGCTCAAGTCACAGCTGCAGAGCAGACTTACCACCCTGCTGTTGGA
GGGTGAGGAGGGTGGTGTGGTAGGAGTTGGGTTGCCAGAGGGTGAAAAAG
CTGATGGCGCTGAAGGGGAGGCGGGGACTCCAAGGGGTAACGTCAGTAAG
GTCTCTGGTGTGAATGCGGATAGGGTTGATGGGGATGATGATGGAGAAGG
GGATGGTGAGGTTGAGCTGCAGCATCAGGAGGCAGGCATGGAGCTGGACA
TTGAAGGCATGACTGTCTCTGAGCTACGGGAGCAGTTGCACGAGAGAGGC
TACGCAGTGGCAGGCAGGAAAGCTGACCTCCAGCAGCGCCTCAGGGATGT
GCTAGTGACTGTGCCTGCAGCAGCAACTGCAACTGAGGCGACCCCTCCTG
GATCGGATGCCGATGAGCCTGACGCCGATGAGGCGGCTGCAGAGCATGAG
GCTCCGCCAGCAGCAGCCATAGGTGGTGCGAGAAGGGCCTCGCGAGCTCT
TATGGGCTTTATTTTTGGCAGCTCCCAGCCAGCCGATGCTGATGCAGGGC
CAGGTGAGATGAGTGAAGACGAGCAGGAGCCTCACCCTGCCAGCCCCACA
GCTGCCTCGGATGCTTCTCGTTCGGTGAACGAGGATGCCATGGCA
back to top