mRNA_C-australica_Contig_1032.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1032.1.1
Unique NamemRNA_C-australica_Contig_1032.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1032contigC-australica_Contig_1032:986..1316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.0327475-CDS-C-australica_Contig_1032:985..11451682586770.0327475-CDS-C-australica_Contig_1032:985..1145Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 986..1145 -
1682586770.0430775-CDS-C-australica_Contig_1032:1218..13161682586770.0430775-CDS-C-australica_Contig_1032:1218..1316Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 1219..1316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1032.1.1prot_C-australica_Contig_1032.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1032 986..1316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1032.1.1

>prot_C-australica_Contig_1032.1.1 ID=prot_C-australica_Contig_1032.1.1|Name=mRNA_C-australica_Contig_1032.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=86bp
TLEGPGRAHARDCPTALKAMGVPRYVTGNYLQRFRDEGVLLEPSASADIE
SYTSQWPTLHQAAADASAPEECPAGMHTLLAVLEGE
back to top

mRNA from alignment at C-australica_Contig_1032:986..1316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1032.1.1 ID=mRNA_C-australica_Contig_1032.1.1|Name=mRNA_C-australica_Contig_1032.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=331bp|location=Sequence derived from alignment at C-australica_Contig_1032:986..1316- (Chrysoparadoxa australica CS_1217)
ACACTGGAGGGTCCGGGGCGAGCTCATGCCAGGGATTGCCCCACTGCCCT
CAAGGCAATGGGTGTTCCTAGATATGTGACAGGGAACTACCTGCAACGGT
GAGTGGGCTCTCTCTCTCATCTCACTCCATGCTCTCTCTCATCACCTATG
CCCCCACTCATCTCACCTCAGATTTCGTGATGAGGGAGTGCTGCTGGAGC
CCTCTGCCTCTGCTGATATAGAGAGTTATACCAGCCAGTGGCCCACCCTG
CACCAAGCTGCAGCCGACGCCTCCGCACCAGAGGAATGCCCAGCAGGGAT
GCACACTCTGCTGGCAGTACTGGAGGGTGAG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1032:986..1316-

>mRNA_C-australica_Contig_1032.1.1 ID=mRNA_C-australica_Contig_1032.1.1|Name=mRNA_C-australica_Contig_1032.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=258bp|location=Sequence derived from alignment at C-australica_Contig_1032:986..1316- (Chrysoparadoxa australica CS_1217)
ACACTGGAGGGTCCGGGGCGAGCTCATGCCAGGGATTGCCCCACTGCCCT
CAAGGCAATGGGTGTTCCTAGATATGTGACAGGGAACTACCTGCAACGAT
TTCGTGATGAGGGAGTGCTGCTGGAGCCCTCTGCCTCTGCTGATATAGAG
AGTTATACCAGCCAGTGGCCCACCCTGCACCAAGCTGCAGCCGACGCCTC
CGCACCAGAGGAATGCCCAGCAGGGATGCACACTCTGCTGGCAGTACTGG
AGGGTGAG
back to top