mRNA_C-australica_Contig_1031.1.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1031.1.3
Unique NamemRNA_C-australica_Contig_1031.1.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1031.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1031contigC-australica_Contig_1031:119..3080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3847.GLYMA13G31780.1
PFAMsLRRNT_2,LRR_8,Pkinase_Tyr
Model size1333
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019199,GO:0019538,GO:0023052,GO:0030054,GO:0036211,GO:0038023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564
Exons14
Evalue5.77e-05
EggNOG OGsCOG0515@1|root,2QUCU@2759|Eukaryota,37MTP@33090|Viridiplantae,3GGQ7@35493|Streptophyta,4JJZA@91835|fabids
DescriptionProtein STRUBBELIG-RECEPTOR FAMILY 3-like
Cds size996
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1031.1.3prot_C-australica_Contig_1031.1.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1031 372..2934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586768.6713505-UTR-C-australica_Contig_1031:118..2161682586768.6713505-UTR-C-australica_Contig_1031:118..216Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1031 119..216 +
1682586768.6840403-UTR-C-australica_Contig_1031:278..3711682586768.6840403-UTR-C-australica_Contig_1031:278..371Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1031 279..371 +
1682586768.8505647-UTR-C-australica_Contig_1031:2934..30801682586768.8505647-UTR-C-australica_Contig_1031:2934..3080Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1031 2935..3080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586768.6962202-CDS-C-australica_Contig_1031:371..4171682586768.6962202-CDS-C-australica_Contig_1031:371..417Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 372..417 +
1682586768.7128592-CDS-C-australica_Contig_1031:482..5451682586768.7128592-CDS-C-australica_Contig_1031:482..545Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 483..545 +
1682586768.723661-CDS-C-australica_Contig_1031:700..7721682586768.723661-CDS-C-australica_Contig_1031:700..772Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 701..772 +
1682586768.7342484-CDS-C-australica_Contig_1031:866..9821682586768.7342484-CDS-C-australica_Contig_1031:866..982Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 867..982 +
1682586768.7443423-CDS-C-australica_Contig_1031:1239..13991682586768.7443423-CDS-C-australica_Contig_1031:1239..1399Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 1240..1399 +
1682586768.7532024-CDS-C-australica_Contig_1031:1592..16321682586768.7532024-CDS-C-australica_Contig_1031:1592..1632Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 1593..1632 +
1682586768.7617338-CDS-C-australica_Contig_1031:1890..19541682586768.7617338-CDS-C-australica_Contig_1031:1890..1954Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 1891..1954 +
1682586768.7729516-CDS-C-australica_Contig_1031:2046..20911682586768.7729516-CDS-C-australica_Contig_1031:2046..2091Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 2047..2091 +
1682586768.7885718-CDS-C-australica_Contig_1031:2230..23091682586768.7885718-CDS-C-australica_Contig_1031:2230..2309Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 2231..2309 +
1682586768.8067703-CDS-C-australica_Contig_1031:2400..24511682586768.8067703-CDS-C-australica_Contig_1031:2400..2451Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 2401..2451 +
1682586768.8210003-CDS-C-australica_Contig_1031:2521..25611682586768.8210003-CDS-C-australica_Contig_1031:2521..2561Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 2522..2561 +
1682586768.8309655-CDS-C-australica_Contig_1031:2623..26671682586768.8309655-CDS-C-australica_Contig_1031:2623..2667Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 2624..2667 +
1682586768.8407161-CDS-C-australica_Contig_1031:2758..29341682586768.8407161-CDS-C-australica_Contig_1031:2758..2934Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1031 2759..2934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1031.1.3

>prot_C-australica_Contig_1031.1.3 ID=prot_C-australica_Contig_1031.1.3|Name=mRNA_C-australica_Contig_1031.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=332bp
MLFEGLAGPRWKEKKGWLGRAGTPNQRGVEPFSCHPSLWTGVSTDMGHIT
ALHLANLGAEGKVKGLEPLLHLISLDLSWNQVHEIPMAIAMLKRLEILKI
SAAGMRGPLPKSLPISLRELDLRHNSLEGEIPEAILKCKKLSVLNLGQNC
FTGGIPGAIGQLVSLRELRLSCNLLTGAIPPLPLNLQILDLSRNKLDGSF
PKVGELAKLRELRMSNNQLTGTLTGVGLGELTTLVMLYAADNRLRGPLPP
ELFSLKELRFLNLQRNHLEGAVPATIGNLDKLVALVLCGNKLVSPLPSTL
ARLSKLSDMAILSGTPSRMAGVKRGFTKHGT*
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mRNA from alignment at C-australica_Contig_1031:119..3080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1031.1.3 ID=mRNA_C-australica_Contig_1031.1.3|Name=mRNA_C-australica_Contig_1031.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2962bp|location=Sequence derived from alignment at C-australica_Contig_1031:119..3080+ (Chrysoparadoxa australica CS_1217)
TTGCCTTTGAGTTGCTGGCGTGCCACCAGGCTGCTGAGGCTGCCAAGAAG
TCACTGCATCCAGAGGCCCATAAGGAATGGCAAGACCTCAAGCTTGAGGT
AAATCTCTACTTGACTTCACTCCCTCCCTCCAGTTCATCTCACCATCCCA
CCGCCACTAGGAGGTGGCTTTGGCCAAGTTATACGAGCAGGCCAAAGGGG
AACCCTACGCCTACTGCCCACCCATAGCTGATTTGGAGAAGCAGAGCCTT
AAAATGTTGTTTGAAGGCCTTGCAGGGCCCAGGTGGAAGGAGAAGAAGGG
TAGGTGACAGAGGAAAAGGCAAAGCATCATGTTCCCTCTCGTAACACTGA
AACCTTCCTTCCAGGGTGGCTTGGGAGAGCAGGAACACCTAACCAGCGTG
GAGTGGAACCATTCTCTTGCCATCCTTGTCGGTCCTTCATGTCTGCCCAT
TACCCACCCAAACCTATTTCTATTCTTATACCTCAGCCTTAGCTGCAACA
TATATCAGGCTTGAGCAGCTGGTACCTTAGACCTTGATTACGAACGCATC
ATCAGCCTTGTCACAAGCTGCTTCCCTTGCAGCACTTTGGACTGGGGTGA
GCACAGATATGGGCCATATCACAGCACTTCATCTAGCCAATTTGGGTGCT
GAAGGTGGCTTGGCTCTATAATTCTGCCAGAATGACTCAAGCAGCCCAGC
CAGACGCTACTCATTCCAGCTGTGCATTAATTGTTGGCTTTCTCTTAGGA
AAGGTGAAGGGACTGGAGCCTTTACTGCACCTGATATCCCTGGATCTGTC
TTGGAACCAGGTCCATGAGATACCCATGGCTATTGCCATGCTGAAAAGAT
TGGAGATACTCAAAGTGAGGAGGCATCTTGACCTCTCTCAGTGCCCATCC
ATGATCAGCACCGCATCACCCCATTGGCATCAACGCCTAGGACTTAGCTG
CCGCATAGTTGCTTCACCTTTCTATCCAAGCAACTTGAGAGGATCTGTGC
TTGCTAACCCTCAACTCTCCGCCTTTGCTCACCTTAAACAACTGCGCAAC
GCATCTAACAATCTTACGACCTTACCGTTCATTGCAGCCTCAAGACTCTA
TTCATTGCTCCCTCTCATCAGATTTCAGCAGCGGGTATGAGGGGACCATT
GCCAAAAAGCTTACCCATCTCTCTGAGAGAATTAGACCTGCGTCATAATA
GCCTGGAGGGCGAAATACCTGAAGCCATACTCAAGTGCAAGAAGCTCAGC
GTGCTGAATCTGGGACAGAACTGCTTCACAGGTGGATAAAGATGTATTGC
TTGGGTGGTTAAAGCTGTGGTTGGGTGAAGGGGTTGAGGGAAGTAACAAG
GTGCTTGGTCAGGGCTGGAAGTCATTTTTCATTACGCTAGACTACACAGC
GTCTCACTAGAACTCCAGGCCTGAATGCTATCCCAATCCTTTTTACTCAC
CCCCCCGTTGGCCTTGCTGCAAAGGGGGGATACCGGGGGCGATTGGCCAG
TTAGTGAGTTTGAGGTATGTATGTGCGTGAAGTGGGTGGTGTGGTCTTCA
GCCAACTTTTTAACCTACTTGTCCTGCATCGTCATCGAGCGACAAGATCA
CAACATGACTAATTGAACTAGTTGGACTCATTGTGATGCATCACCCCTGT
CAAAATGTGTCAAAATGTATTTTGGTAGCCACCTTTGCCAGATGTTCCAT
GTGGCTCAGCTCCAGCTTGCACCGCCTAAACCGCCACTGAAATCATCCCA
TCTTCTGCATATTGTTTGGAAGGGAGCTAAGGCTATCATGCAACCTTCTC
ACTGGAGCGATACCTCCTCTACCACTTAACCTGCAGGTAGCGGCTCAGCT
TCAGCCTCAACTCTAAAGGCTCACCTGGCTTTAACCTTGTCCTCAGTCCT
TACTAATCCATTGCCTCGGCCTCAGCAGATTCTAGACTTAAGCAGGAACA
AGCTTGATGGAAGCTTCCCCAAGGCAAATATCGCTAAAAGCTGATACGGC
ACAGTATTTCCGGCTGGTGTAGACGCTACTTGTGTAGCCAGGATCTGTAT
TACGTATTACATTAGCATAACATGCATATTTTACTCACTCTCACTGAGTA
TCACACATGCAGGTGGGAGAATTAGCTAAGTTGAGAGAGTTACGAATGAG
CAACAATCAGCTGACAGGAACTCTCACCGGTGTTGGACTTGGTACTACTT
AAAGCCCCCACGCTTTAGGAATGCATATCACTCTGATTGCACTAACTTTC
TACTTTCTGCTACCCCCCTCACATCACCACAGGAGAGCTTACAACACTAG
TGATGCTGTATGCTGCCGATAACAGACTTAGAGGTACCGCAGCTCCCCTC
CACATGCCTCATTGCCTCTCCTTCCTTTCACATCCCATCATCTGCTTTTG
AAGGGCCCCTCCCCCCCGAGCTGTTTAGTCTCAAGGAACTGAGGTAAGAG
AGACCCCCTCAATTACACCCTCTAAACTGTTTTTCTCACCTGCAAATGCG
CACAGGTTCTTAAACCTTCAAAGGAATCACCTGGAAGGGGCAGTTCCAGG
TCAGCAGCTAACCATGAACTTACAGTGTAGCACCGCCAACTCATGCCTGG
TATTTGCTGCCCATTTCTGCCACTACCTGGTCTGTCTCAGCAACTATAGG
CAACTTGGACAAGCTTGTAGCTTTAGTTTTATGTGGCAACAAGTTGGTGA
GCCCGCTGCCATCGACGCTGGCTCGGTTGAGTAAACTTTCGGACATGGCA
ATACTAAGTGGCACACCATCCAGAATGGCTGGAGTCAAAAGGGGGTTCAC
CAAGCACGGTACATAAGAAATCTAGCGCTGGAACGAGCACAACTGACAAC
TGCTGTGAGACCGAGAACCCAATTCATGACTAGCCACATCACTTTGATGA
GGAGGTGTGCTTCTTCCTCATACCTCATTGCCTTAGCTGACCTCTCCTGC
ACTCTCTCCGCC
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Coding sequence (CDS) from alignment at C-australica_Contig_1031:119..3080+

>mRNA_C-australica_Contig_1031.1.3 ID=mRNA_C-australica_Contig_1031.1.3|Name=mRNA_C-australica_Contig_1031.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=996bp|location=Sequence derived from alignment at C-australica_Contig_1031:119..3080+ (Chrysoparadoxa australica CS_1217)
ATGTTGTTTGAAGGCCTTGCAGGGCCCAGGTGGAAGGAGAAGAAGGGGTG
GCTTGGGAGAGCAGGAACACCTAACCAGCGTGGAGTGGAACCATTCTCTT
GCCATCCTTCACTTTGGACTGGGGTGAGCACAGATATGGGCCATATCACA
GCACTTCATCTAGCCAATTTGGGTGCTGAAGGAAAGGTGAAGGGACTGGA
GCCTTTACTGCACCTGATATCCCTGGATCTGTCTTGGAACCAGGTCCATG
AGATACCCATGGCTATTGCCATGCTGAAAAGATTGGAGATACTCAAAATT
TCAGCAGCGGGTATGAGGGGACCATTGCCAAAAAGCTTACCCATCTCTCT
GAGAGAATTAGACCTGCGTCATAATAGCCTGGAGGGCGAAATACCTGAAG
CCATACTCAAGTGCAAGAAGCTCAGCGTGCTGAATCTGGGACAGAACTGC
TTCACAGGGGGGATACCGGGGGCGATTGGCCAGTTAGTGAGTTTGAGGGA
GCTAAGGCTATCATGCAACCTTCTCACTGGAGCGATACCTCCTCTACCAC
TTAACCTGCAGATTCTAGACTTAAGCAGGAACAAGCTTGATGGAAGCTTC
CCCAAGGTGGGAGAATTAGCTAAGTTGAGAGAGTTACGAATGAGCAACAA
TCAGCTGACAGGAACTCTCACCGGTGTTGGACTTGGAGAGCTTACAACAC
TAGTGATGCTGTATGCTGCCGATAACAGACTTAGAGGGCCCCTCCCCCCC
GAGCTGTTTAGTCTCAAGGAACTGAGGTTCTTAAACCTTCAAAGGAATCA
CCTGGAAGGGGCAGTTCCAGCAACTATAGGCAACTTGGACAAGCTTGTAG
CTTTAGTTTTATGTGGCAACAAGTTGGTGAGCCCGCTGCCATCGACGCTG
GCTCGGTTGAGTAAACTTTCGGACATGGCAATACTAAGTGGCACACCATC
CAGAATGGCTGGAGTCAAAAGGGGGTTCACCAAGCACGGTACATAA
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