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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 3847.GLYMA13G31780.1 |
| PFAMs | LRRNT_2,LRR_8,Pkinase_Tyr |
| Model size | 1333 |
| Max annot lvl | 35493|Streptophyta |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019199,GO:0019538,GO:0023052,GO:0030054,GO:0036211,GO:0038023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564 |
| Exons | 14 |
| Evalue | 5.77e-05 |
| EggNOG OGs | COG0515@1|root,2QUCU@2759|Eukaryota,37MTP@33090|Viridiplantae,3GGQ7@35493|Streptophyta,4JJZA@91835|fabids |
| Description | Protein STRUBBELIG-RECEPTOR FAMILY 3-like |
| Cds size | 996 |
| COG category | T |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586768.6713505-UTR-C-australica_Contig_1031:118..216 | 1682586768.6713505-UTR-C-australica_Contig_1031:118..216 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1031 119..216 + |
| 1682586768.6840403-UTR-C-australica_Contig_1031:278..371 | 1682586768.6840403-UTR-C-australica_Contig_1031:278..371 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1031 279..371 + |
| 1682586768.8505647-UTR-C-australica_Contig_1031:2934..3080 | 1682586768.8505647-UTR-C-australica_Contig_1031:2934..3080 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_1031 2935..3080 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586768.6962202-CDS-C-australica_Contig_1031:371..417 | 1682586768.6962202-CDS-C-australica_Contig_1031:371..417 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 372..417 + |
| 1682586768.7128592-CDS-C-australica_Contig_1031:482..545 | 1682586768.7128592-CDS-C-australica_Contig_1031:482..545 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 483..545 + |
| 1682586768.723661-CDS-C-australica_Contig_1031:700..772 | 1682586768.723661-CDS-C-australica_Contig_1031:700..772 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 701..772 + |
| 1682586768.7342484-CDS-C-australica_Contig_1031:866..982 | 1682586768.7342484-CDS-C-australica_Contig_1031:866..982 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 867..982 + |
| 1682586768.7443423-CDS-C-australica_Contig_1031:1239..1399 | 1682586768.7443423-CDS-C-australica_Contig_1031:1239..1399 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 1240..1399 + |
| 1682586768.7532024-CDS-C-australica_Contig_1031:1592..1632 | 1682586768.7532024-CDS-C-australica_Contig_1031:1592..1632 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 1593..1632 + |
| 1682586768.7617338-CDS-C-australica_Contig_1031:1890..1954 | 1682586768.7617338-CDS-C-australica_Contig_1031:1890..1954 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 1891..1954 + |
| 1682586768.7729516-CDS-C-australica_Contig_1031:2046..2091 | 1682586768.7729516-CDS-C-australica_Contig_1031:2046..2091 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 2047..2091 + |
| 1682586768.7885718-CDS-C-australica_Contig_1031:2230..2309 | 1682586768.7885718-CDS-C-australica_Contig_1031:2230..2309 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 2231..2309 + |
| 1682586768.8067703-CDS-C-australica_Contig_1031:2400..2451 | 1682586768.8067703-CDS-C-australica_Contig_1031:2400..2451 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 2401..2451 + |
| 1682586768.8210003-CDS-C-australica_Contig_1031:2521..2561 | 1682586768.8210003-CDS-C-australica_Contig_1031:2521..2561 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 2522..2561 + |
| 1682586768.8309655-CDS-C-australica_Contig_1031:2623..2667 | 1682586768.8309655-CDS-C-australica_Contig_1031:2623..2667 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 2624..2667 + |
| 1682586768.8407161-CDS-C-australica_Contig_1031:2758..2934 | 1682586768.8407161-CDS-C-australica_Contig_1031:2758..2934 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_1031 2759..2934 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1031.1.3 >prot_C-australica_Contig_1031.1.3 ID=prot_C-australica_Contig_1031.1.3|Name=mRNA_C-australica_Contig_1031.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=332bp
MLFEGLAGPRWKEKKGWLGRAGTPNQRGVEPFSCHPSLWTGVSTDMGHIT
ALHLANLGAEGKVKGLEPLLHLISLDLSWNQVHEIPMAIAMLKRLEILKI
SAAGMRGPLPKSLPISLRELDLRHNSLEGEIPEAILKCKKLSVLNLGQNC
FTGGIPGAIGQLVSLRELRLSCNLLTGAIPPLPLNLQILDLSRNKLDGSF
PKVGELAKLRELRMSNNQLTGTLTGVGLGELTTLVMLYAADNRLRGPLPP
ELFSLKELRFLNLQRNHLEGAVPATIGNLDKLVALVLCGNKLVSPLPSTL
ARLSKLSDMAILSGTPSRMAGVKRGFTKHGT* back to topmRNA from alignment at C-australica_Contig_1031:119..3080+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_1031.1.3 ID=mRNA_C-australica_Contig_1031.1.3|Name=mRNA_C-australica_Contig_1031.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2962bp|location=Sequence derived from alignment at C-australica_Contig_1031:119..3080+ (Chrysoparadoxa australica CS_1217)
TTGCCTTTGAGTTGCTGGCGTGCCACCAGGCTGCTGAGGCTGCCAAGAAG
TCACTGCATCCAGAGGCCCATAAGGAATGGCAAGACCTCAAGCTTGAGGT
AAATCTCTACTTGACTTCACTCCCTCCCTCCAGTTCATCTCACCATCCCA
CCGCCACTAGGAGGTGGCTTTGGCCAAGTTATACGAGCAGGCCAAAGGGG
AACCCTACGCCTACTGCCCACCCATAGCTGATTTGGAGAAGCAGAGCCTT
AAAATGTTGTTTGAAGGCCTTGCAGGGCCCAGGTGGAAGGAGAAGAAGGG
TAGGTGACAGAGGAAAAGGCAAAGCATCATGTTCCCTCTCGTAACACTGA
AACCTTCCTTCCAGGGTGGCTTGGGAGAGCAGGAACACCTAACCAGCGTG
GAGTGGAACCATTCTCTTGCCATCCTTGTCGGTCCTTCATGTCTGCCCAT
TACCCACCCAAACCTATTTCTATTCTTATACCTCAGCCTTAGCTGCAACA
TATATCAGGCTTGAGCAGCTGGTACCTTAGACCTTGATTACGAACGCATC
ATCAGCCTTGTCACAAGCTGCTTCCCTTGCAGCACTTTGGACTGGGGTGA
GCACAGATATGGGCCATATCACAGCACTTCATCTAGCCAATTTGGGTGCT
GAAGGTGGCTTGGCTCTATAATTCTGCCAGAATGACTCAAGCAGCCCAGC
CAGACGCTACTCATTCCAGCTGTGCATTAATTGTTGGCTTTCTCTTAGGA
AAGGTGAAGGGACTGGAGCCTTTACTGCACCTGATATCCCTGGATCTGTC
TTGGAACCAGGTCCATGAGATACCCATGGCTATTGCCATGCTGAAAAGAT
TGGAGATACTCAAAGTGAGGAGGCATCTTGACCTCTCTCAGTGCCCATCC
ATGATCAGCACCGCATCACCCCATTGGCATCAACGCCTAGGACTTAGCTG
CCGCATAGTTGCTTCACCTTTCTATCCAAGCAACTTGAGAGGATCTGTGC
TTGCTAACCCTCAACTCTCCGCCTTTGCTCACCTTAAACAACTGCGCAAC
GCATCTAACAATCTTACGACCTTACCGTTCATTGCAGCCTCAAGACTCTA
TTCATTGCTCCCTCTCATCAGATTTCAGCAGCGGGTATGAGGGGACCATT
GCCAAAAAGCTTACCCATCTCTCTGAGAGAATTAGACCTGCGTCATAATA
GCCTGGAGGGCGAAATACCTGAAGCCATACTCAAGTGCAAGAAGCTCAGC
GTGCTGAATCTGGGACAGAACTGCTTCACAGGTGGATAAAGATGTATTGC
TTGGGTGGTTAAAGCTGTGGTTGGGTGAAGGGGTTGAGGGAAGTAACAAG
GTGCTTGGTCAGGGCTGGAAGTCATTTTTCATTACGCTAGACTACACAGC
GTCTCACTAGAACTCCAGGCCTGAATGCTATCCCAATCCTTTTTACTCAC
CCCCCCGTTGGCCTTGCTGCAAAGGGGGGATACCGGGGGCGATTGGCCAG
TTAGTGAGTTTGAGGTATGTATGTGCGTGAAGTGGGTGGTGTGGTCTTCA
GCCAACTTTTTAACCTACTTGTCCTGCATCGTCATCGAGCGACAAGATCA
CAACATGACTAATTGAACTAGTTGGACTCATTGTGATGCATCACCCCTGT
CAAAATGTGTCAAAATGTATTTTGGTAGCCACCTTTGCCAGATGTTCCAT
GTGGCTCAGCTCCAGCTTGCACCGCCTAAACCGCCACTGAAATCATCCCA
TCTTCTGCATATTGTTTGGAAGGGAGCTAAGGCTATCATGCAACCTTCTC
ACTGGAGCGATACCTCCTCTACCACTTAACCTGCAGGTAGCGGCTCAGCT
TCAGCCTCAACTCTAAAGGCTCACCTGGCTTTAACCTTGTCCTCAGTCCT
TACTAATCCATTGCCTCGGCCTCAGCAGATTCTAGACTTAAGCAGGAACA
AGCTTGATGGAAGCTTCCCCAAGGCAAATATCGCTAAAAGCTGATACGGC
ACAGTATTTCCGGCTGGTGTAGACGCTACTTGTGTAGCCAGGATCTGTAT
TACGTATTACATTAGCATAACATGCATATTTTACTCACTCTCACTGAGTA
TCACACATGCAGGTGGGAGAATTAGCTAAGTTGAGAGAGTTACGAATGAG
CAACAATCAGCTGACAGGAACTCTCACCGGTGTTGGACTTGGTACTACTT
AAAGCCCCCACGCTTTAGGAATGCATATCACTCTGATTGCACTAACTTTC
TACTTTCTGCTACCCCCCTCACATCACCACAGGAGAGCTTACAACACTAG
TGATGCTGTATGCTGCCGATAACAGACTTAGAGGTACCGCAGCTCCCCTC
CACATGCCTCATTGCCTCTCCTTCCTTTCACATCCCATCATCTGCTTTTG
AAGGGCCCCTCCCCCCCGAGCTGTTTAGTCTCAAGGAACTGAGGTAAGAG
AGACCCCCTCAATTACACCCTCTAAACTGTTTTTCTCACCTGCAAATGCG
CACAGGTTCTTAAACCTTCAAAGGAATCACCTGGAAGGGGCAGTTCCAGG
TCAGCAGCTAACCATGAACTTACAGTGTAGCACCGCCAACTCATGCCTGG
TATTTGCTGCCCATTTCTGCCACTACCTGGTCTGTCTCAGCAACTATAGG
CAACTTGGACAAGCTTGTAGCTTTAGTTTTATGTGGCAACAAGTTGGTGA
GCCCGCTGCCATCGACGCTGGCTCGGTTGAGTAAACTTTCGGACATGGCA
ATACTAAGTGGCACACCATCCAGAATGGCTGGAGTCAAAAGGGGGTTCAC
CAAGCACGGTACATAAGAAATCTAGCGCTGGAACGAGCACAACTGACAAC
TGCTGTGAGACCGAGAACCCAATTCATGACTAGCCACATCACTTTGATGA
GGAGGTGTGCTTCTTCCTCATACCTCATTGCCTTAGCTGACCTCTCCTGC
ACTCTCTCCGCC back to topCoding sequence (CDS) from alignment at C-australica_Contig_1031:119..3080+ >mRNA_C-australica_Contig_1031.1.3 ID=mRNA_C-australica_Contig_1031.1.3|Name=mRNA_C-australica_Contig_1031.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=996bp|location=Sequence derived from alignment at C-australica_Contig_1031:119..3080+ (Chrysoparadoxa australica CS_1217)
ATGTTGTTTGAAGGCCTTGCAGGGCCCAGGTGGAAGGAGAAGAAGGGGTG
GCTTGGGAGAGCAGGAACACCTAACCAGCGTGGAGTGGAACCATTCTCTT
GCCATCCTTCACTTTGGACTGGGGTGAGCACAGATATGGGCCATATCACA
GCACTTCATCTAGCCAATTTGGGTGCTGAAGGAAAGGTGAAGGGACTGGA
GCCTTTACTGCACCTGATATCCCTGGATCTGTCTTGGAACCAGGTCCATG
AGATACCCATGGCTATTGCCATGCTGAAAAGATTGGAGATACTCAAAATT
TCAGCAGCGGGTATGAGGGGACCATTGCCAAAAAGCTTACCCATCTCTCT
GAGAGAATTAGACCTGCGTCATAATAGCCTGGAGGGCGAAATACCTGAAG
CCATACTCAAGTGCAAGAAGCTCAGCGTGCTGAATCTGGGACAGAACTGC
TTCACAGGGGGGATACCGGGGGCGATTGGCCAGTTAGTGAGTTTGAGGGA
GCTAAGGCTATCATGCAACCTTCTCACTGGAGCGATACCTCCTCTACCAC
TTAACCTGCAGATTCTAGACTTAAGCAGGAACAAGCTTGATGGAAGCTTC
CCCAAGGTGGGAGAATTAGCTAAGTTGAGAGAGTTACGAATGAGCAACAA
TCAGCTGACAGGAACTCTCACCGGTGTTGGACTTGGAGAGCTTACAACAC
TAGTGATGCTGTATGCTGCCGATAACAGACTTAGAGGGCCCCTCCCCCCC
GAGCTGTTTAGTCTCAAGGAACTGAGGTTCTTAAACCTTCAAAGGAATCA
CCTGGAAGGGGCAGTTCCAGCAACTATAGGCAACTTGGACAAGCTTGTAG
CTTTAGTTTTATGTGGCAACAAGTTGGTGAGCCCGCTGCCATCGACGCTG
GCTCGGTTGAGTAAACTTTCGGACATGGCAATACTAAGTGGCACACCATC
CAGAATGGCTGGAGTCAAAAGGGGGTTCACCAAGCACGGTACATAA back to top
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