mRNA_C-australica_Contig_10308.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A350PD98_9BACT (Four helix bundle protein n=3 Tax=Bacteria TaxID=2 RepID=A0A350PD98_9BACT)

HSP 1 Score: 155 bits (391), Expect = 1.960e-46
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = 1

Query:    1 MANRK-YDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNSEELEWLLKECNELISIFNSSIKTAKKNL 357
            M N+  ++L++R+I FS+ I+ + E LPK+Y G HFAKQ+ RSGTSPAFQY EA AAESRKDFIHKLKIG KELRETFVCL IIK  PL +SE LE  L EC+ELI+IF+ SI TAKKNL
Sbjct:    1 MKNKNSFNLQDRIINFSLLIMKIVEGLPKSYTGQHFAKQLVRSGTSPAFQYGEAQAAESRKDFIHKLKIGQKELRETFVCLTIIKKHPLSSSELLEIALTECDELIAIFHKSIGTAKKNL 120

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A3D1G8B9_9BACT (Four helix bundle protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G8B9_9BACT)

HSP 1 Score: 151 bits (381), Expect = 6.130e-45
Identity = 73/119 (61.34%), Postives = 94/119 (78.99%), Query Frame = 1

Query:    1 MANRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNSEELEWLLKECNELISIFNSSIKTAKKNL 357
            M NR +DL++RLI FS+ I+ + + LPKTY G HFAKQ+ RSGTSPAFQY EA +AESRKDFIHK+KIG KEL E+++CL+IIK  PL+ SE L+  + EC+EL +IF+ SI TA+ NL
Sbjct:    1 MKNRNFDLQDRLIKFSLLIMKVVDNLPKTYAGQHFAKQLVRSGTSPAFQYGEAKSAESRKDFIHKVKIGKKELGESYICLQIIKQHPLLESEILDGAINECDELSAIFHKSIATARNNL 119

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: UPI000CD7F64E (four helix bundle protein n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD7F64E)

HSP 1 Score: 151 bits (381), Expect = 6.730e-45
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 1

Query:    4 ANRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNSEELEWLLKECNELISIFNSSIKTAKKNL 357
              R YDLE+RLI FSI II+L E+LPK+Y G +FA Q+ RSGTSPAF Y+EA +AESRKDF+HK KI LKELRE+  C+KIIK KPL+  + L+ LL EC ELISIF  SI TAK+N+
Sbjct:    6 TKRVYDLEDRLIRFSINIISLIEKLPKSYTGKYFANQLVRSGTSPAFHYSEAKSAESRKDFVHKFKIALKELRESSTCMKIIKRKPLLKDQLLDDLLAECEELISIFVKSISTAKQNM 123

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A2D9FZ42_9BACT (Four helix bundle protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FZ42_9BACT)

HSP 1 Score: 150 bits (380), Expect = 9.270e-45
Identity = 73/119 (61.34%), Postives = 93/119 (78.15%), Query Frame = 1

Query:    1 MANRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNSEELEWLLKECNELISIFNSSIKTAKKNL 357
            M N+KYDL+ RLI F+I I+ + E LPK Y G HF  Q+ RSGT+PAF Y EA AAESRKDF+HK+KIGLKELRE+F+ L IIK KPL+  ++ +  L+EC+ELISIF +SI TAK+N+
Sbjct:    1 MKNQKYDLQNRLIKFAILIMEVVEMLPKNYTGRHFKNQLVRSGTAPAFHYGEAQAAESRKDFVHKMKIGLKELRESFIALTIIKEKPLLEDQKADLALRECDELISIFFTSIDTAKRNM 119

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A521FGS9_9BACT (Four helix bundle protein n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521FGS9_9BACT)

HSP 1 Score: 143 bits (360), Expect = 9.330e-42
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1

Query:    1 MANRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNSEELEWLLKECNELISIFNSSIKTAKKNL 357
            M  +K+DLEERLI F++  + +SE+LPKTY+G H ++Q+ R GTSPAF Y+EA +AESRKDF+HKLKIGLKELRE+   +KII+ KPL+    L   LKEC ELISIF  SI+T K N+
Sbjct:    1 MNYKKFDLEERLIQFALNTLEVSEKLPKTYIGKHLSQQLVRCGTSPAFHYSEAKSAESRKDFVHKLKIGLKELRESSTNMKIIQRKPLLTDPILNKTLKECEELISIFVKSIQTTKGNM 119

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A3F3I3V0_9BACT (Four helix bundle protein n=7 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3F3I3V0_9BACT)

HSP 1 Score: 143 bits (360), Expect = 9.620e-42
Identity = 76/118 (64.41%), Postives = 93/118 (78.81%), Query Frame = 1

Query:    1 MANRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNSEELEWLLKECNELISIFNSSIKTAKKN 354
            M  R+Y+L+ RLI FSI II +SE+LPK YVG HF+KQ+ RSGTSPAFQ AEA +AES KDFIHKLKIG+KELRET V L+II  K L +   ++  LKEC+EL++IF SSI+TAK N
Sbjct:    1 MKARQYNLQNRLIEFSISIIEVSEKLPKNYVGQHFSKQLIRSGTSPAFQQAEAQSAESSKDFIHKLKIGIKELRETKVNLEIISRKFLPSEVIVQNTLKECDELVAIFYSSIRTAKAN 118

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A1F3DRZ6_9BACT (Four helix bundle protein n=1 Tax=Bacteroidetes bacterium GWA2_30_7 TaxID=1797313 RepID=A0A1F3DRZ6_9BACT)

HSP 1 Score: 142 bits (357), Expect = 2.750e-41
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 1

Query:   13 KYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVN-SEELEWLLKECNELISIFNSSIKTAKKN 354
            KYDLEERLI F+I ++ +SE LP T  G H A Q+ RSGTSPAF Y EA AAES KDFIHK+ + LKELRET +CLKII  KPL+N S++++  LKECNELI+IF  SIKTAK N
Sbjct:    4 KYDLEERLIRFAIRMLEVSELLPNTKAGNHIAGQLVRSGTSPAFNYGEAQAAESAKDFIHKMGVVLKELRETGICLKIIILKPLINPSDKIKSDLKECNELIAIFTKSIKTAKTN 118

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A0B0ECL1_9BACT (Uncharacterized protein n=2 Tax=Candidatus Brocadiales TaxID=1127829 RepID=A0A0B0ECL1_9BACT)

HSP 1 Score: 142 bits (357), Expect = 3.110e-41
Identity = 73/121 (60.33%), Postives = 93/121 (76.86%), Query Frame = 1

Query:   10 RKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVN-SEELEWLLKECNELISIFNSSIKTAKKNLSSIK 369
            +KYDLE+RLI F+I II L EELPKT  G H A Q+ R GTSPA  Y E  ++ES+KDFIHK+KI LKELRET +CLKII+ KPL+  S+  + ++KECNELISIF SS++TA+K+   +K
Sbjct:    5 KKYDLEDRLIEFAIRIIELVEELPKTRAGNHIAGQLIRCGTSPALNYGEVQSSESQKDFIHKMKIILKELRETNICLKIIERKPLIKQSQRRDKIIKECNELISIFVSSVRTAQKSKERVK 125

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: A0A1F3IN57_9BACT (Four helix bundle protein n=1 Tax=Bacteroidetes bacterium GWF2_33_16 TaxID=1797341 RepID=A0A1F3IN57_9BACT)

HSP 1 Score: 140 bits (354), Expect = 8.890e-41
Identity = 76/118 (64.41%), Postives = 91/118 (77.12%), Query Frame = 1

Query:    4 ANRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNS-EELEWLLKECNELISIFNSSIKTAKKN 354
            +NRKYDLEERLI FS+ II L E LP T VG H   Q+ RSGTSPAF Y EA +AES  DFIHK+K+ LKELRET + +KIIK KPL+NS E ++  LKEC+ELI+IF  SI+TA+KN
Sbjct:    5 SNRKYDLEERLIEFSLLIIRLVEMLPDTRVGSHIGGQLLRSGTSPAFNYGEAQSAESINDFIHKMKVCLKELRETKISMKIIKRKPLLNSIEVIDNSLKECDELIAIFVKSIETAQKN 122

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BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Match: UPI001BC5A397 (Four helix bundle protein n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=UPI001BC5A397)

HSP 1 Score: 140 bits (353), Expect = 1.150e-40
Identity = 79/117 (67.52%), Postives = 88/117 (75.21%), Query Frame = 1

Query:    7 NRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQYAEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNS-EELEWLLKECNELISIFNSSIKTAKKN 354
            NR YDLEERLI F++ II+L E+LP   +G H   QI RSGTSPA  Y EA AAES+ DFIHK+KI LKELRET V LKII  KPLVN+  E E LLKEC+ELISIF  SI TAKKN
Sbjct:    6 NRIYDLEERLIQFALGIISLVEKLPDNKIGNHIGGQILRSGTSPALNYGEAQAAESKTDFIHKMKICLKELRETRVSLKIIIRKPLVNNITEAETLLKECSELISIFAKSIDTAKKN 122

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10308.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A350PD98_9BACT	1.960e-46	67.50	Four helix bundle protein n=3 Tax=Bacteria TaxID=2...	[more]
A0A3D1G8B9_9BACT	6.130e-45	61.34	Four helix bundle protein n=1 Tax=Balneolaceae bac...	[more]
UPI000CD7F64E	6.730e-45	64.41	four helix bundle protein n=1 Tax=Gracilimonas amy...	[more]
A0A2D9FZ42_9BACT	9.270e-45	61.34	Four helix bundle protein n=2 Tax=Balneolaceae Tax...	[more]
A0A521FGS9_9BACT	9.330e-42	59.66	Four helix bundle protein n=1 Tax=Gracilimonas men...	[more]
A0A3F3I3V0_9BACT	9.620e-42	64.41	Four helix bundle protein n=7 Tax=Bacteroidetes/Ch...	[more]
A0A1F3DRZ6_9BACT	2.750e-41	65.22	Four helix bundle protein n=1 Tax=Bacteroidetes ba...	[more]
A0A0B0ECL1_9BACT	3.110e-41	60.33	Uncharacterized protein n=2 Tax=Candidatus Brocadi...	[more]
A0A1F3IN57_9BACT	8.890e-41	64.41	Four helix bundle protein n=1 Tax=Bacteroidetes ba...	[more]
UPI001BC5A397	1.150e-40	67.52	Four helix bundle protein n=1 Tax=Ignavibacteriale...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10308:133..507+
coding sequence from alignment at C-australica_Contig_10308:133..507+

protein sequence of mRNA_C-australica_Contig_10308.1.1

>prot_C-australica_Contig_10308.1.1 ID=prot_C-australica_Contig_10308.1.1|Name=mRNA_C-australica_Contig_10308.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=125bp
MANRKYDLEERLITFSIEIINLSEELPKTYVGIHFAKQITRSGTSPAFQY
AEASAAESRKDFIHKLKIGLKELRETFVCLKIIKSKPLVNSEELEWLLKE
CNELISIFNSSIKTAKKNLSSIKS*

mRNA from alignment at C-australica_Contig_10308:133..507+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10308.1.1 ID=mRNA_C-australica_Contig_10308.1.1|Name=mRNA_C-australica_Contig_10308.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=375bp|location=Sequence derived from alignment at C-australica_Contig_10308:133..507+ (Chrysoparadoxa australica CS_1217)
ATGGCAAATAGAAAATATGATCTAGAAGAGCGATTAATAACATTTTCGAT
TGAAATAATAAATTTAAGTGAAGAGTTACCGAAAACTTATGTGGGTATTC
ATTTTGCGAAACAAATCACAAGAAGTGGAACCTCTCCGGCATTCCAGTAT
GCAGAAGCATCAGCTGCGGAATCTAGAAAGGATTTTATTCATAAGCTGAA
AATAGGTTTAAAGGAATTAAGAGAAACATTTGTATGTCTGAAGATTATTA
AAAGCAAACCACTTGTAAACTCTGAAGAATTAGAGTGGCTTCTAAAAGAG
TGCAATGAATTGATTTCAATTTTTAACTCAAGTATTAAAACAGCGAAGAA
AAATCTTTCTTCAATAAAATCATGA

Coding sequence (CDS) from alignment at C-australica_Contig_10308:133..507+

>mRNA_C-australica_Contig_10308.1.1 ID=mRNA_C-australica_Contig_10308.1.1|Name=mRNA_C-australica_Contig_10308.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=375bp|location=Sequence derived from alignment at C-australica_Contig_10308:133..507+ (Chrysoparadoxa australica CS_1217)
ATGGCAAATAGAAAATATGATCTAGAAGAGCGATTAATAACATTTTCGAT
TGAAATAATAAATTTAAGTGAAGAGTTACCGAAAACTTATGTGGGTATTC
ATTTTGCGAAACAAATCACAAGAAGTGGAACCTCTCCGGCATTCCAGTAT
GCAGAAGCATCAGCTGCGGAATCTAGAAAGGATTTTATTCATAAGCTGAA
AATAGGTTTAAAGGAATTAAGAGAAACATTTGTATGTCTGAAGATTATTA
AAAGCAAACCACTTGTAAACTCTGAAGAATTAGAGTGGCTTCTAAAAGAG
TGCAATGAATTGATTTCAATTTTTAACTCAAGTATTAAAACAGCGAAGAA
AAATCTTTCTTCAATAAAATCATGA