mRNA_C-australica_Contig_10307.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: UPI0003B65BBF (AsmA family protein n=1 Tax=Oceanicaulis alexandrii TaxID=153233 RepID=UPI0003B65BBF) HSP 1 Score: 381 bits (978), Expect = 1.220e-126 Identity = 203/207 (98.07%), Postives = 207/207 (100.00%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFG+APFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGD+ADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVY+EDGSQSR+IEALDLSVELPSVDDPVRLRGSFEADGRPMTF Sbjct: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGDAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDAADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYFEDGSQSRQIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 207
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A3UDH5_9PROT (Putative AsmA protein n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UDH5_9PROT) HSP 1 Score: 319 bits (818), Expect = 1.100e-102 Identity = 165/207 (79.71%), Postives = 186/207 (89.86%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 MRRL+IALLVL ILVIGVAVLAPAL+P DLIRERT+TAA + LGREV L GDIRLQ+LPQLQVRA +A IANA GFGE PFAEMQEMRV+VALIPLL RQ+EIEEFVLV+PVIRLQSNARGNNWTFGD+ + AQA+ +GF+RQPGALPFEASFGDVRIENGAV ++DG Q+RR +AL+LS++LPSVD PVRLRGSFEADGRPM F Sbjct: 1 MRRLLIALLVLVILVIGVAVLAPALVPTDLIRERTETAAQEALGREVTLAGDIRLQVLPQLQVRANDARIANAEGFGEEPFAEMQEMRVAVALIPLLQRQIEIEEFVLVDPVIRLQSNARGNNWTFGDNTEAVAQATPEEGFQRQPGALPFEASFGDVRIENGAVTFDDGVQTRRFDALNLSIDLPSVDQPVRLRGSFEADGRPMNF 207
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: UPI001EDD4298 (AsmA family protein n=1 Tax=Shewanella sp. ER-Te-42B-Light TaxID=2872342 RepID=UPI001EDD4298) HSP 1 Score: 243 bits (620), Expect = 4.560e-73 Identity = 125/208 (60.10%), Postives = 161/208 (77.40%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFG-DSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 MR L++ L+ L L+ G + PAL +D +RER A + + REVRL+GD+ LQ+LP++QVRAQ+A IANAPGFG+ P A+M E+R S+AL+PLLSR++EIEEFVLV+PVIRL++ A GNNWT G +AD+ ++ +GF R+PGALPFEA+FGDVRIENG+V+Y D Q+RRIE LDL+V LPSVD PV L GSF ADGRPM F Sbjct: 1 MRTLLVILISLAALIAGAVLALPALFSSDWLRERVSAEAGEMINREVRLSGDVSLQVLPRIQVRAQDASIANAPGFGDEPLAQMGELRASLALMPLLSRRIEIEEFVLVDPVIRLEARADGNNWTLGAPAADEAPAPAAGEGFVRRPGALPFEAAFGDVRIENGSVFYSDPGQTRRIEDLDLTVGLPSVDGPVSLSGSFSADGRPMQF 208
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A5M6ZHJ3_9PROT (AsmA family protein n=2 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6ZHJ3_9PROT) HSP 1 Score: 239 bits (609), Expect = 3.000e-71 Identity = 127/208 (61.06%), Postives = 161/208 (77.40%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSS-DGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 MR L I LL++ L++G A+ PALI +D +R+R AS + REVRL G ++L++ P+LQVRA++A IANAPGFG+ P A+M+E+R S+A PLLS++VEIEEFVLVEPVIRL++ A GNNWT G + A AS+S +GF R+PGALPFEA+FGDVRIENG+V+Y D Q+RRIE LDLSV+LPSVD PVRL GS AD RPM F Sbjct: 34 MRTLFILLLLIAALIVGAALALPALISSDWLRDRVSQEASAAINREVRLDGAVQLRVFPRLQVRAEDASIANAPGFGDEPLAQMRELRASLAWGPLLSQRVEIEEFVLVEPVIRLEARADGNNWTLGAPREDAAPASASGEGFVRRPGALPFEAAFGDVRIENGSVFYRDPGQTRRIENLDLSVDLPSVDAPVRLSGSLSADDRPMRF 241
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A2D5FU13_9PROT (Uncharacterized protein n=2 Tax=Oceanicaulis sp. TaxID=1924941 RepID=A0A2D5FU13_9PROT) HSP 1 Score: 222 bits (565), Expect = 5.230e-65 Identity = 120/208 (57.69%), Postives = 147/208 (70.67%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGD-SADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 M+RL + LLVL LV+G A + PA+IPA R+R + AA L R V L GD+ L ILP++QV A++ IANA GF PFA+M EMRV + LIPLLSR+VEI EFVLV+PVIRL+ A GNNWTF D A A + DGF RQPGALP ++SFGDVRIEN +++Y DGSQSR I LDL++ LPS+D P + GS ADG MTF Sbjct: 1 MKRLGLILLVLVALVVGAAFILPAVIPASAYRDRVEAAAGDALNRPVALAGDVSLTILPRVQVVARDVTIANAEGFSNEPFAQMGEMRVGLELIPLLSRRVEITEFVLVDPVIRLEQRAGGNNWTFADPDAAPAPAAPAGDGFVRQPGALPIDSSFGDVRIENASIFYSDGSQSREITGLDLAIALPSLDAPTAIDGSLSADGEAMTF 208
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A1Q8FJR5_9PROT (Uncharacterized protein n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FJR5_9PROT) HSP 1 Score: 220 bits (560), Expect = 2.420e-64 Identity = 122/209 (58.37%), Postives = 147/209 (70.33%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTF--GDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 M+RL +AL ++ +L + + P++IPA RE +TAA L REV L GDI LQ+ P+L++RA + IANA GFG+ FAEM+EMRV V LIPLLSR+VEI EFVLVEP IRL N GNNWTF DSA T A S DGF R+ GALP EASFGDVRIENGA+Y+ DG+QSR I LDLSV LPS+D RL G+ ADG + F Sbjct: 1 MKRLAVALGLVVVLAVAAIFILPSVIPASTYREPVETAARDALNREVSLAGDISLQVFPRLEIRASDVSIANAEGFGDDAFAEMREMRVGVRLIPLLSRRVEITEFVLVEPTIRLAQNRSGNNWTFTPADSATPTP-APSGDGFVRREGALPIEASFGDVRIENGAIYFADGNQSRAITGLDLSVALPSLDTETRLTGALNADGESLDF 208
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: UPI0013751940 (AsmA family protein n=1 Tax=Hyphobacterium indicum TaxID=2162714 RepID=UPI0013751940) HSP 1 Score: 219 bits (558), Expect = 4.720e-64 Identity = 111/206 (53.88%), Postives = 145/206 (70.39%), Query Frame = 1 Query: 4 RRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 RRL+ L+ L ++V+ A++ P LIP + R+R Q AAS+ LGREV L GD+RL +LP +Q++A N IAN GFG+ PFAEM EMRV V L PLLSR V IEEF+L++PVIRL+ NNW+FG AQA + GF R+PGALPFEAS GD+RIENG + + DG+Q+R IE LDL + +P +DDP+ + G+ ADG MT Sbjct: 3 RRLLTFLIGLILVVVIAAIIIPFLIPESVYRDRAQIAASENLGREVTLAGDVRLSLLPNVQIQAHNVSIANEDGFGDVPFAEMAEMRVGVQLWPLLSRTVVIEEFILIDPVIRLEQRGNRNNWSFGPDDGTAAQAPADAGFVRRPGALPFEASLGDIRIENGFISFADGTQTREIEGLDLDIHMPGLDDPLDITGALTADGENMTL 208
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A2M7GW74_9RHOB (Uncharacterized protein (Fragment) n=1 Tax=Rhodobacterales bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_59_13 TaxID=1974086 RepID=A0A2M7GW74_9RHOB) HSP 1 Score: 213 bits (542), Expect = 4.130e-62 Identity = 108/206 (52.43%), Postives = 146/206 (70.87%), Query Frame = 1 Query: 4 RRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 RRL+ L+ L ++V+ A++ P LIP + R+R Q AAS+ LGREV L GD+ L++LP +Q++A+N IAN GFG+ FAEM EMRV V L PLLSR + I+EFVLV+PVIRL+ NNW+ G A ASS++GF R+PGALPFEAS GD+RIENG + Y +G+++R IE LDL + +P +DDP+ + G+ ADG MT Sbjct: 9 RRLLTFLVGLILIVVIAAIIIPFLIPESVYRDRAQIAASENLGREVSLAGDVSLRLLPSVQIQARNVSIANEEGFGDTAFAEMAEMRVGVQLWPLLSRNIVIDEFVLVDPVIRLEQRGNRNNWSLGPDTGVDAPASSTEGFVRRPGALPFEASLGDIRIENGFISYINGAEAREIEGLDLDIHMPGLDDPLDITGALRADGETMTI 214
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: Q0ANJ4_MARMM (AsmA family protein n=1 Tax=Maricaulis maris (strain MCS10) TaxID=394221 RepID=Q0ANJ4_MARMM) HSP 1 Score: 214 bits (544), Expect = 5.690e-62 Identity = 118/209 (56.46%), Postives = 148/209 (70.81%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTF-GDSADQTAQASSSDG-FRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 M+RL +AL ++ +L+I A + P++IP R+ +TAA L R+V L GDI LQILPQLQ+RA IAN GFG+ FAEM+EMRV + LIPLLSR+VEI EFVLVEP IRL N RGNNWTF AD A A ++DG F R GALP EASFGDVRIENGA+++ DGS++R I LDL++ LPS+D RL G+ ADG ++F Sbjct: 1 MKRLGLALGLIIVLLIAAAFILPSVIPTSTYRDPVETAARDALNRDVTLGGDISLQILPQLQIRASEVSIANVDGFGDEAFAEMREMRVGLRLIPLLSRRVEITEFVLVEPTIRLAQNRRGNNWTFTAPDADMAAPAPAADGGFVRGDGALPIEASFGDVRIENGALHFTDGSETRSITGLDLNIALPSLDTETRLTGALNADGESLSF 209
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A1G9U7T0_9PROT (AsmA protein n=1 Tax=Maricaulis salignorans TaxID=144026 RepID=A0A1G9U7T0_9PROT) HSP 1 Score: 211 bits (538), Expect = 4.440e-61 Identity = 109/207 (52.66%), Postives = 147/207 (71.01%), Query Frame = 1 Query: 1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621 M RL+ + VL +LVIG A++ P ++P +ER + AAS+ L R+V L G++ L++LP++++RA N IANA GFG+A FAEM EMRV+V L PLLSR++EI EFVL++PVIRLQ NNWT ++ D A+ DG R+PGALP EASFGDVRIENG + Y DG QS I LDL++ LPS+D P++L G+ A+G M+F Sbjct: 1 MTRLLQVIFVLIVLVIGAAIIIPFVLPPSFYQERVRLAASEALHRDVTLDGELELRLLPRIEIRASNVSIANAEGFGDASFAEMGEMRVAVKLEPLLSRRIEIAEFVLIDPVIRLQQRGGRNNWTMAEAGDTPPAATGGDGGFRRPGALPLEASFGDVRIENGTISYSDGDQSHDITGLDLAMGLPSLDGPMQLDGALSANGERMSF 207 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10307.1.1 >prot_C-australica_Contig_10307.1.1 ID=prot_C-australica_Contig_10307.1.1|Name=mRNA_C-australica_Contig_10307.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=207bp MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTback to top mRNA from alignment at C-australica_Contig_10307:205..825+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10307.1.1 ID=mRNA_C-australica_Contig_10307.1.1|Name=mRNA_C-australica_Contig_10307.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=621bp|location=Sequence derived from alignment at C-australica_Contig_10307:205..825+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10307:205..825+ >mRNA_C-australica_Contig_10307.1.1 ID=mRNA_C-australica_Contig_10307.1.1|Name=mRNA_C-australica_Contig_10307.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=621bp|location=Sequence derived from alignment at C-australica_Contig_10307:205..825+ (Chrysoparadoxa australica CS_1217)back to top |