mRNA_C-australica_Contig_10307.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: UPI0003B65BBF (AsmA family protein n=1 Tax=Oceanicaulis alexandrii TaxID=153233 RepID=UPI0003B65BBF)

HSP 1 Score: 381 bits (978), Expect = 1.220e-126
Identity = 203/207 (98.07%), Postives = 207/207 (100.00%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFG+APFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGD+ADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVY+EDGSQSR+IEALDLSVELPSVDDPVRLRGSFEADGRPMTF
Sbjct:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGDAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDAADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYFEDGSQSRQIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 207

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A3UDH5_9PROT (Putative AsmA protein n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UDH5_9PROT)

HSP 1 Score: 319 bits (818), Expect = 1.100e-102
Identity = 165/207 (79.71%), Postives = 186/207 (89.86%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            MRRL+IALLVL ILVIGVAVLAPAL+P DLIRERT+TAA + LGREV L GDIRLQ+LPQLQVRA +A IANA GFGE PFAEMQEMRV+VALIPLL RQ+EIEEFVLV+PVIRLQSNARGNNWTFGD+ +  AQA+  +GF+RQPGALPFEASFGDVRIENGAV ++DG Q+RR +AL+LS++LPSVD PVRLRGSFEADGRPM F
Sbjct:    1 MRRLLIALLVLVILVIGVAVLAPALVPTDLIRERTETAAQEALGREVTLAGDIRLQVLPQLQVRANDARIANAEGFGEEPFAEMQEMRVAVALIPLLQRQIEIEEFVLVDPVIRLQSNARGNNWTFGDNTEAVAQATPEEGFQRQPGALPFEASFGDVRIENGAVTFDDGVQTRRFDALNLSIDLPSVDQPVRLRGSFEADGRPMNF 207

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: UPI001EDD4298 (AsmA family protein n=1 Tax=Shewanella sp. ER-Te-42B-Light TaxID=2872342 RepID=UPI001EDD4298)

HSP 1 Score: 243 bits (620), Expect = 4.560e-73
Identity = 125/208 (60.10%), Postives = 161/208 (77.40%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFG-DSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            MR L++ L+ L  L+ G  +  PAL  +D +RER    A + + REVRL+GD+ LQ+LP++QVRAQ+A IANAPGFG+ P A+M E+R S+AL+PLLSR++EIEEFVLV+PVIRL++ A GNNWT G  +AD+    ++ +GF R+PGALPFEA+FGDVRIENG+V+Y D  Q+RRIE LDL+V LPSVD PV L GSF ADGRPM F
Sbjct:    1 MRTLLVILISLAALIAGAVLALPALFSSDWLRERVSAEAGEMINREVRLSGDVSLQVLPRIQVRAQDASIANAPGFGDEPLAQMGELRASLALMPLLSRRIEIEEFVLVDPVIRLEARADGNNWTLGAPAADEAPAPAAGEGFVRRPGALPFEAAFGDVRIENGSVFYSDPGQTRRIEDLDLTVGLPSVDGPVSLSGSFSADGRPMQF 208

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A5M6ZHJ3_9PROT (AsmA family protein n=2 Tax=Alkalicaulis satelles TaxID=2609175 RepID=A0A5M6ZHJ3_9PROT)

HSP 1 Score: 239 bits (609), Expect = 3.000e-71
Identity = 127/208 (61.06%), Postives = 161/208 (77.40%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSS-DGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            MR L I LL++  L++G A+  PALI +D +R+R    AS  + REVRL G ++L++ P+LQVRA++A IANAPGFG+ P A+M+E+R S+A  PLLS++VEIEEFVLVEPVIRL++ A GNNWT G   +  A AS+S +GF R+PGALPFEA+FGDVRIENG+V+Y D  Q+RRIE LDLSV+LPSVD PVRL GS  AD RPM F
Sbjct:   34 MRTLFILLLLIAALIVGAALALPALISSDWLRDRVSQEASAAINREVRLDGAVQLRVFPRLQVRAEDASIANAPGFGDEPLAQMRELRASLAWGPLLSQRVEIEEFVLVEPVIRLEARADGNNWTLGAPREDAAPASASGEGFVRRPGALPFEAAFGDVRIENGSVFYRDPGQTRRIENLDLSVDLPSVDAPVRLSGSLSADDRPMRF 241

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A2D5FU13_9PROT (Uncharacterized protein n=2 Tax=Oceanicaulis sp. TaxID=1924941 RepID=A0A2D5FU13_9PROT)

HSP 1 Score: 222 bits (565), Expect = 5.230e-65
Identity = 120/208 (57.69%), Postives = 147/208 (70.67%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGD-SADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            M+RL + LLVL  LV+G A + PA+IPA   R+R + AA   L R V L GD+ L ILP++QV A++  IANA GF   PFA+M EMRV + LIPLLSR+VEI EFVLV+PVIRL+  A GNNWTF D  A     A + DGF RQPGALP ++SFGDVRIEN +++Y DGSQSR I  LDL++ LPS+D P  + GS  ADG  MTF
Sbjct:    1 MKRLGLILLVLVALVVGAAFILPAVIPASAYRDRVEAAAGDALNRPVALAGDVSLTILPRVQVVARDVTIANAEGFSNEPFAQMGEMRVGLELIPLLSRRVEITEFVLVDPVIRLEQRAGGNNWTFADPDAAPAPAAPAGDGFVRQPGALPIDSSFGDVRIENASIFYSDGSQSREITGLDLAIALPSLDAPTAIDGSLSADGEAMTF 208

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A1Q8FJR5_9PROT (Uncharacterized protein n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FJR5_9PROT)

HSP 1 Score: 220 bits (560), Expect = 2.420e-64
Identity = 122/209 (58.37%), Postives = 147/209 (70.33%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTF--GDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            M+RL +AL ++ +L +    + P++IPA   RE  +TAA   L REV L GDI LQ+ P+L++RA +  IANA GFG+  FAEM+EMRV V LIPLLSR+VEI EFVLVEP IRL  N  GNNWTF   DSA  T  A S DGF R+ GALP EASFGDVRIENGA+Y+ DG+QSR I  LDLSV LPS+D   RL G+  ADG  + F
Sbjct:    1 MKRLAVALGLVVVLAVAAIFILPSVIPASTYREPVETAARDALNREVSLAGDISLQVFPRLEIRASDVSIANAEGFGDDAFAEMREMRVGVRLIPLLSRRVEITEFVLVEPTIRLAQNRSGNNWTFTPADSATPTP-APSGDGFVRREGALPIEASFGDVRIENGAIYFADGNQSRAITGLDLSVALPSLDTETRLTGALNADGESLDF 208

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: UPI0013751940 (AsmA family protein n=1 Tax=Hyphobacterium indicum TaxID=2162714 RepID=UPI0013751940)

HSP 1 Score: 219 bits (558), Expect = 4.720e-64
Identity = 111/206 (53.88%), Postives = 145/206 (70.39%), Query Frame = 1

Query:    4 RRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            RRL+  L+ L ++V+  A++ P LIP  + R+R Q AAS+ LGREV L GD+RL +LP +Q++A N  IAN  GFG+ PFAEM EMRV V L PLLSR V IEEF+L++PVIRL+     NNW+FG      AQA +  GF R+PGALPFEAS GD+RIENG + + DG+Q+R IE LDL + +P +DDP+ + G+  ADG  MT 
Sbjct:    3 RRLLTFLIGLILVVVIAAIIIPFLIPESVYRDRAQIAASENLGREVTLAGDVRLSLLPNVQIQAHNVSIANEDGFGDVPFAEMAEMRVGVQLWPLLSRTVVIEEFILIDPVIRLEQRGNRNNWSFGPDDGTAAQAPADAGFVRRPGALPFEASLGDIRIENGFISFADGTQTREIEGLDLDIHMPGLDDPLDITGALTADGENMTL 208

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A2M7GW74_9RHOB (Uncharacterized protein (Fragment) n=1 Tax=Rhodobacterales bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_59_13 TaxID=1974086 RepID=A0A2M7GW74_9RHOB)

HSP 1 Score: 213 bits (542), Expect = 4.130e-62
Identity = 108/206 (52.43%), Postives = 146/206 (70.87%), Query Frame = 1

Query:    4 RRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            RRL+  L+ L ++V+  A++ P LIP  + R+R Q AAS+ LGREV L GD+ L++LP +Q++A+N  IAN  GFG+  FAEM EMRV V L PLLSR + I+EFVLV+PVIRL+     NNW+ G      A ASS++GF R+PGALPFEAS GD+RIENG + Y +G+++R IE LDL + +P +DDP+ + G+  ADG  MT 
Sbjct:    9 RRLLTFLVGLILIVVIAAIIIPFLIPESVYRDRAQIAASENLGREVSLAGDVSLRLLPSVQIQARNVSIANEEGFGDTAFAEMAEMRVGVQLWPLLSRNIVIDEFVLVDPVIRLEQRGNRNNWSLGPDTGVDAPASSTEGFVRRPGALPFEASLGDIRIENGFISYINGAEAREIEGLDLDIHMPGLDDPLDITGALRADGETMTI 214

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: Q0ANJ4_MARMM (AsmA family protein n=1 Tax=Maricaulis maris (strain MCS10) TaxID=394221 RepID=Q0ANJ4_MARMM)

HSP 1 Score: 214 bits (544), Expect = 5.690e-62
Identity = 118/209 (56.46%), Postives = 148/209 (70.81%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTF-GDSADQTAQASSSDG-FRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            M+RL +AL ++ +L+I  A + P++IP    R+  +TAA   L R+V L GDI LQILPQLQ+RA    IAN  GFG+  FAEM+EMRV + LIPLLSR+VEI EFVLVEP IRL  N RGNNWTF    AD  A A ++DG F R  GALP EASFGDVRIENGA+++ DGS++R I  LDL++ LPS+D   RL G+  ADG  ++F
Sbjct:    1 MKRLGLALGLIIVLLIAAAFILPSVIPTSTYRDPVETAARDALNRDVTLGGDISLQILPQLQIRASEVSIANVDGFGDEAFAEMREMRVGLRLIPLLSRRVEITEFVLVEPTIRLAQNRRGNNWTFTAPDADMAAPAPAADGGFVRGDGALPIEASFGDVRIENGALHFTDGSETRSITGLDLNIALPSLDTETRLTGALNADGESLSF 209

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BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Match: A0A1G9U7T0_9PROT (AsmA protein n=1 Tax=Maricaulis salignorans TaxID=144026 RepID=A0A1G9U7T0_9PROT)

HSP 1 Score: 211 bits (538), Expect = 4.440e-61
Identity = 109/207 (52.66%), Postives = 147/207 (71.01%), Query Frame = 1

Query:    1 MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLTGDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQVEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALPFEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEADGRPMTF 621
            M RL+  + VL +LVIG A++ P ++P    +ER + AAS+ L R+V L G++ L++LP++++RA N  IANA GFG+A FAEM EMRV+V L PLLSR++EI EFVL++PVIRLQ     NNWT  ++ D    A+  DG  R+PGALP EASFGDVRIENG + Y DG QS  I  LDL++ LPS+D P++L G+  A+G  M+F
Sbjct:    1 MTRLLQVIFVLIVLVIGAAIIIPFVLPPSFYQERVRLAASEALHRDVTLDGELELRLLPRIEIRASNVSIANAEGFGDASFAEMGEMRVAVKLEPLLSRRIEIAEFVLIDPVIRLQQRGGRNNWTMAEAGDTPPAATGGDGGFRRPGALPLEASFGDVRIENGTISYSDGDQSHDITGLDLAMGLPSLDGPMQLDGALSANGERMSF 207

The following BLAST results are available for this feature:

BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot

BLAST of mRNA_C-australica_Contig_10307.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
UPI0003B65BBF	1.220e-126	98.07	AsmA family protein n=1 Tax=Oceanicaulis alexandri...	[more]
A3UDH5_9PROT	1.100e-102	79.71	Putative AsmA protein n=2 Tax=unclassified Oceanic...	[more]
UPI001EDD4298	4.560e-73	60.10	AsmA family protein n=1 Tax=Shewanella sp. ER-Te-4...	[more]
A0A5M6ZHJ3_9PROT	3.000e-71	61.06	AsmA family protein n=2 Tax=Alkalicaulis satelles ...	[more]
A0A2D5FU13_9PROT	5.230e-65	57.69	Uncharacterized protein n=2 Tax=Oceanicaulis sp. T...	[more]
A0A1Q8FJR5_9PROT	2.420e-64	58.37	Uncharacterized protein n=2 Tax=Maricaulis TaxID=7...	[more]
UPI0013751940	4.720e-64	53.88	AsmA family protein n=1 Tax=Hyphobacterium indicum...	[more]
A0A2M7GW74_9RHOB	4.130e-62	52.43	Uncharacterized protein (Fragment) n=1 Tax=Rhodoba...	[more]
Q0ANJ4_MARMM	5.690e-62	56.46	AsmA family protein n=1 Tax=Maricaulis maris (stra...	[more]
A0A1G9U7T0_9PROT	4.440e-61	52.66	AsmA protein n=1 Tax=Maricaulis salignorans TaxID=...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_10307:205..825+
coding sequence from alignment at C-australica_Contig_10307:205..825+

protein sequence of mRNA_C-australica_Contig_10307.1.1

>prot_C-australica_Contig_10307.1.1 ID=prot_C-australica_Contig_10307.1.1|Name=mRNA_C-australica_Contig_10307.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=207bp
MRRLIIALLVLFILVIGVAVLAPALIPADLIRERTQTAASQTLGREVRLT
GDIRLQILPQLQVRAQNAEIANAPGFGEAPFAEMQEMRVSVALIPLLSRQ
VEIEEFVLVEPVIRLQSNARGNNWTFGDSADQTAQASSSDGFRRQPGALP
FEASFGDVRIENGAVYYEDGSQSRRIEALDLSVELPSVDDPVRLRGSFEA
DGRPMTF

mRNA from alignment at C-australica_Contig_10307:205..825+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_10307.1.1 ID=mRNA_C-australica_Contig_10307.1.1|Name=mRNA_C-australica_Contig_10307.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=621bp|location=Sequence derived from alignment at C-australica_Contig_10307:205..825+ (Chrysoparadoxa australica CS_1217)
ATGCGCCGTCTGATTATCGCCCTGCTCGTTCTGTTCATTCTGGTGATCGG
CGTGGCTGTTCTGGCGCCCGCGCTCATCCCCGCCGACCTCATTCGTGAAC
GCACCCAGACCGCCGCCAGTCAGACCCTGGGGCGCGAGGTGCGGCTGACG
GGCGATATCCGCCTGCAGATCCTGCCTCAGCTTCAGGTGCGCGCCCAGAA
CGCAGAAATCGCCAATGCGCCGGGCTTTGGCGAGGCGCCGTTCGCCGAAA
TGCAGGAAATGCGGGTGTCGGTGGCGCTGATCCCGCTCTTGTCGCGCCAG
GTGGAGATCGAGGAGTTCGTGCTGGTCGAGCCGGTGATCCGGCTTCAGTC
AAACGCCCGCGGTAACAACTGGACCTTCGGCGACTCCGCGGATCAGACAG
CGCAGGCGTCCTCCAGCGACGGCTTCCGGCGCCAGCCCGGCGCCCTGCCC
TTTGAAGCCAGCTTTGGCGATGTGCGTATTGAAAACGGCGCGGTCTATTA
TGAAGACGGCTCCCAAAGCCGCCGGATCGAAGCGCTGGATCTGAGCGTGG
AGCTGCCGTCCGTGGATGATCCCGTGCGCTTGCGCGGATCGTTTGAAGCG
GATGGCCGGCCGATGACGTTC

Coding sequence (CDS) from alignment at C-australica_Contig_10307:205..825+

>mRNA_C-australica_Contig_10307.1.1 ID=mRNA_C-australica_Contig_10307.1.1|Name=mRNA_C-australica_Contig_10307.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=621bp|location=Sequence derived from alignment at C-australica_Contig_10307:205..825+ (Chrysoparadoxa australica CS_1217)
ATGCGCCGTCTGATTATCGCCCTGCTCGTTCTGTTCATTCTGGTGATCGG
CGTGGCTGTTCTGGCGCCCGCGCTCATCCCCGCCGACCTCATTCGTGAAC
GCACCCAGACCGCCGCCAGTCAGACCCTGGGGCGCGAGGTGCGGCTGACG
GGCGATATCCGCCTGCAGATCCTGCCTCAGCTTCAGGTGCGCGCCCAGAA
CGCAGAAATCGCCAATGCGCCGGGCTTTGGCGAGGCGCCGTTCGCCGAAA
TGCAGGAAATGCGGGTGTCGGTGGCGCTGATCCCGCTCTTGTCGCGCCAG
GTGGAGATCGAGGAGTTCGTGCTGGTCGAGCCGGTGATCCGGCTTCAGTC
AAACGCCCGCGGTAACAACTGGACCTTCGGCGACTCCGCGGATCAGACAG
CGCAGGCGTCCTCCAGCGACGGCTTCCGGCGCCAGCCCGGCGCCCTGCCC
TTTGAAGCCAGCTTTGGCGATGTGCGTATTGAAAACGGCGCGGTCTATTA
TGAAGACGGCTCCCAAAGCCGCCGGATCGAAGCGCTGGATCTGAGCGTGG
AGCTGCCGTCCGTGGATGATCCCGTGCGCTTGCGCGGATCGTTTGAAGCG
GATGGCCGGCCGATGACGTTC