mRNA_C-australica_Contig_1030.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1030.4.1
Unique NamemRNA_C-australica_Contig_1030.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1030.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1030contigC-australica_Contig_1030:4640..5372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size647
Hectar predicted targeting categoryother localisation
Exons2
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586767.9408708-UTR-C-australica_Contig_1030:4639..47821682586767.9408708-UTR-C-australica_Contig_1030:4639..4782Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1030 4640..4782 +
1682586767.9506338-UTR-C-australica_Contig_1030:4868..48771682586767.9506338-UTR-C-australica_Contig_1030:4868..4877Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1030 4869..4877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586767.9589803-CDS-C-australica_Contig_1030:4877..53721682586767.9589803-CDS-C-australica_Contig_1030:4877..5372Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1030 4878..5372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1030.4.1prot_C-australica_Contig_1030.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1030 4878..5372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1030.4.1

>prot_C-australica_Contig_1030.4.1 ID=prot_C-australica_Contig_1030.4.1|Name=mRNA_C-australica_Contig_1030.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=165bp
MPQGSPPHAPPEEAEESGSESSVRSHPEESPPPQPYGSLEETLNGPSFEP
SSPTTSRGLLPHSPLSLEDSVGSEEEEEVKKPQMSEDPCQSRLCSRQWGS
PLQWLHVKFDAAGEAFYQELARWVVSHKAYTLLLAIAFAGCCSLGFMTFH
IVTAADELWTPQDSK
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mRNA from alignment at C-australica_Contig_1030:4640..5372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1030.4.1 ID=mRNA_C-australica_Contig_1030.4.1|Name=mRNA_C-australica_Contig_1030.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=733bp|location=Sequence derived from alignment at C-australica_Contig_1030:4640..5372+ (Chrysoparadoxa australica CS_1217)
GTAATCGACCCAAACACCCTGACACATTCCCCTGCCTTCTCCATTCCATT
CATCACTAGTGTCGGTCTAAAACCTCGGAGGGGAACTTCCTAGCTTTGGA
TCCTCTTTCGAGCAAGAGTTTTGGGCCCAAGGCCGCGGAAGAGGTAAGGA
GGGGCTAGGTCTTCTTAGTCAGCCAGCCCTTCCCTTTCCTCATTTTAGGT
TCCCTTTTTCTTACCCCCACACTTGGTAGGTGAACGGGATGCCTCAAGGC
TCCCCTCCACATGCTCCGCCTGAAGAAGCCGAAGAGTCGGGTTCAGAGAG
CTCAGTTCGCTCTCACCCAGAGGAATCACCCCCCCCTCAGCCATATGGAT
CTTTGGAGGAAACCCTTAACGGCCCTTCCTTTGAACCCTCATCTCCGACG
ACTAGTCGGGGGCTGCTGCCACACTCGCCGCTTTCACTGGAAGATTCGGT
AGGCAGTGAGGAGGAGGAGGAGGTAAAGAAGCCACAAATGAGTGAAGATC
CATGTCAATCACGGCTCTGCTCCAGGCAATGGGGTTCACCTCTGCAGTGG
CTGCATGTGAAGTTTGACGCGGCAGGCGAGGCTTTCTACCAAGAACTTGC
GCGCTGGGTGGTGTCCCATAAGGCGTATACACTACTTCTAGCAATAGCTT
TCGCTGGATGCTGTTCTCTAGGTTTCATGACCTTTCATATCGTGACCGCT
GCGGATGAGCTTTGGACACCTCAAGATAGCAAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1030:4640..5372+

>mRNA_C-australica_Contig_1030.4.1 ID=mRNA_C-australica_Contig_1030.4.1|Name=mRNA_C-australica_Contig_1030.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=495bp|location=Sequence derived from alignment at C-australica_Contig_1030:4640..5372+ (Chrysoparadoxa australica CS_1217)
ATGCCTCAAGGCTCCCCTCCACATGCTCCGCCTGAAGAAGCCGAAGAGTC
GGGTTCAGAGAGCTCAGTTCGCTCTCACCCAGAGGAATCACCCCCCCCTC
AGCCATATGGATCTTTGGAGGAAACCCTTAACGGCCCTTCCTTTGAACCC
TCATCTCCGACGACTAGTCGGGGGCTGCTGCCACACTCGCCGCTTTCACT
GGAAGATTCGGTAGGCAGTGAGGAGGAGGAGGAGGTAAAGAAGCCACAAA
TGAGTGAAGATCCATGTCAATCACGGCTCTGCTCCAGGCAATGGGGTTCA
CCTCTGCAGTGGCTGCATGTGAAGTTTGACGCGGCAGGCGAGGCTTTCTA
CCAAGAACTTGCGCGCTGGGTGGTGTCCCATAAGGCGTATACACTACTTC
TAGCAATAGCTTTCGCTGGATGCTGTTCTCTAGGTTTCATGACCTTTCAT
ATCGTGACCGCTGCGGATGAGCTTTGGACACCTCAAGATAGCAAG
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