mRNA_C-australica_Contig_103.13.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Stop	1
Start	1
Model size	1735
Hectar predicted targeting category	signal anchor
Exons	10
Cds size	1281

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_103.13.1	prot_C-australica_Contig_103.13.1	Chrysoparadoxa australica CS_1217	polypeptide	C-australica_Contig_103 51088..53519 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586765.5443325-UTR-C-australica_Contig_103:50864..50975	1682586765.5443325-UTR-C-australica_Contig_103:50864..50975	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_103 50865..50975 +
1682586765.5529375-UTR-C-australica_Contig_103:51081..51087	1682586765.5529375-UTR-C-australica_Contig_103:51081..51087	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_103 51082..51087 +
1682586765.6545446-UTR-C-australica_Contig_103:53519..53856	1682586765.6545446-UTR-C-australica_Contig_103:53519..53856	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_103 53520..53856 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682586765.5672004-CDS-C-australica_Contig_103:51087..51155	1682586765.5672004-CDS-C-australica_Contig_103:51087..51155	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 51088..51155 +
1682586765.5773253-CDS-C-australica_Contig_103:51235..51308	1682586765.5773253-CDS-C-australica_Contig_103:51235..51308	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 51236..51308 +
1682586765.586112-CDS-C-australica_Contig_103:51401..51476	1682586765.586112-CDS-C-australica_Contig_103:51401..51476	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 51402..51476 +
1682586765.595659-CDS-C-australica_Contig_103:51625..51703	1682586765.595659-CDS-C-australica_Contig_103:51625..51703	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 51626..51703 +
1682586765.6053185-CDS-C-australica_Contig_103:51899..52046	1682586765.6053185-CDS-C-australica_Contig_103:51899..52046	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 51900..52046 +
1682586765.6151826-CDS-C-australica_Contig_103:52189..52249	1682586765.6151826-CDS-C-australica_Contig_103:52189..52249	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 52190..52249 +
1682586765.6251874-CDS-C-australica_Contig_103:52373..52435	1682586765.6251874-CDS-C-australica_Contig_103:52373..52435	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 52374..52435 +
1682586765.6351562-CDS-C-australica_Contig_103:52682..52833	1682586765.6351562-CDS-C-australica_Contig_103:52682..52833	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 52683..52833 +
1682586765.6447873-CDS-C-australica_Contig_103:52952..53519	1682586765.6447873-CDS-C-australica_Contig_103:52952..53519	Chrysoparadoxa australica CS_1217	CDS	C-australica_Contig_103 52953..53519 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_103:50865..53856+
coding sequence from alignment at C-australica_Contig_103:50865..53856+

protein sequence of mRNA_C-australica_Contig_103.13.1

>prot_C-australica_Contig_103.13.1 ID=prot_C-australica_Contig_103.13.1|Name=mRNA_C-australica_Contig_103.13.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=427bp
MKADWADMLPWERKWFCMMLVVSISDVVGLSLSVIALSASVTLLQQLVWG
VLGAGCAMSAAISANLAYEIVQNRSNNHRSLPYYRSLMAFRDAASFVQAL
FSGFLWLSGSPSPTFIIFLLAVSKGFLVVSVEQYQISLVDNSQTKTQRRM
RFRHRQHAPNEVAAIIKVQARVRMILATTRIHRMNEFRCWEQHCGKTQRT
MKVLFVLFLLIFSTATMFVNLAYCIVFDANTTRAWLLTVTTSVLLEIFLK
QPVKLAVQHIAATTLRRIKGGSRKEVRRSTAHGGDAKSASQRSTGNEAAT
VMAPAHSGGVKKDSSSIRPAAQRITVITPTHRGPEDQGQVEGRGSSANRG
TARGRIMSNEEHWHGGSDGLGQWQDKERGGAEGEMDKRSRRRREGGSAPP
SRERRGRNRRVREAGRGERSLPELGF*

mRNA from alignment at C-australica_Contig_103:50865..53856+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_103.13.1 ID=mRNA_C-australica_Contig_103.13.1|Name=mRNA_C-australica_Contig_103.13.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2992bp|location=Sequence derived from alignment at C-australica_Contig_103:50865..53856+ (Chrysoparadoxa australica CS_1217)
CCAGCTACTCTGATCTTCCCCAAGCTTCTGGCAATAGCATCTGTCCCACC
AGCTTCTGCTACCCTTAAGCGACAATGGCGGGCAACACGCAGCATTGAAA
GTGCATCAAAGGTATTCTGAACAGCGCTAGTTCCAGCGGCCTAGAGTGGT
TGGTATGAGTGATCTCGAGCAATGCTTCAAAACAGCTCAAGCTCACTAGT
TGCGCTGCCCCTCTAAGGCTTCAATGAAGGCGGACTGGGCTGATATGCTC
CCATGGGAAAGGAAATGGTTCTGCATGATGCTGGTTGTTAGGTAAGATTC
ATTGCAGCTGCCCGTCTTCGTCCTGCTTATTTATTTGTCTCATCGCCATC
ATGCGGTGCTCTTATCGTCAGCATATCAGATGTGGTTGGGCTCAGCCTTT
CAGTAATTGCGCTGTCTGCCTCAGTAACTTTGCTCCAGCAACTGGTGAGA
TTACTGAACAGTAGCCTATGCTATCTTGAGAAAGTCCTAGTAGTAGCTGC
AACAGCTGGAGGCCGCCTGACACAACTCCCATCTTAGGTATGGGGTGTCC
TTGGTGCAGGATGTGCCATGAGCGCTGCAATATCTGCAAACCTCGCTTAT
GAAATTGTTCAGGTAGCGAATACTGCCTGCCAGCGATCCATACCCAATCT
TGCTTGTGCTAATACCATCTTCAGGGTCACCTAATGTGCACCTCTACAGC
ACCACACAATTGCCATTCTGCCTATCCCAACCAGTGCTAATATCCTTCTT
GCTTCATGCAGAACCGCAGCAACAACCACCGCAGCTTGCCGTACTATCGC
AGCTTAATGGCTTTCCGTGACGCAGCCTCTTTCGTACAGGCAAATAACAC
AGCGCAGGCCCCCTAATCCCGACCTGATCCTCTATGCTCTGTGACCATGT
AGCCAGCTAGTAGCTCAATCGCGTCACTCTCAAGGCTATAATATAGCTGC
TGCTTTCAATAGCCCTGTCCTAGTGCCCCACCCCTTTTTGCTTCACCTCT
CAAGCCTCACATGCTAAACCTCTACTTCAACATAGGCACTGTTCTCTGGC
TTCCTGTGGCTGAGTGGTTCTCCCTCGCCAACTTTCATCATCTTCTTGTT
AGCTGTCAGTAAGGGATTCTTGGTTGTTTCCGTTGAGCAATACCAGATTT
CCCTCGTCGACAACTCCCAAACGAAGACACAGGTCACTCGAATCAAGACC
TGATGCTCACCAGCCTCCCAAGCTAGGTTTTGGCCTAGGAGTCTGTCTCA
CTGATCCCAGTGTTTGCCAACTTGACTCCCTGACAGTCTCTTTGTTCTGC
CCTCTTGTTCTTGACAATGCACTAGCGACGCATGCGGTTCCGCCATCGGC
AACACGCTCCCAATGAGGTGGCAGCCATCATTAAGGTGAAAGCAGCTATT
TCATTTTGTGATTGCTCATTAAAGCTACAGCAGACTATAGCTATACAGCA
ATGGCAGCAGAGACGGGGCCGTCGAGTCTTTAATAATGATGCCTTTTCAT
CCTGAGCAGGTCCAAGCCAGAGTCAGAATGATACTTGCAACCACAAGGAT
CCACCGCATGAATGAGTTCAGGTGACCTCTCTCAAATGCCTAACAGTGCT
TAGACGCAGTTGCTGATCTAGTATGAGGCTATGCTATTTGTGCAGCACAA
CATGCTTTGATGCCATGCCATTCCATGCAACCCGCAATGCTCAGTGAGAT
GACGTGACATGGCTTGAAACAAACTTGTGGTGTGCAGCTAAGCGAAACGG
CGTTTCTGTGCTTCTCTCATACCACTCTGCTGACAAAGCTTGCCTTTACT
GCCTGCTGGGATTTTCAGATGCTGGGAGCAGCATTGTGGCAAGACTCAAC
GGACGATGAAGGTGCTGTTTGTTCTCTTCCTCCTCATCTTTTCAACGGCA
ACCATGTTTGTGAACCTGGCATATTGCATCGTCTTCGATGCCAATACAAC
AAGAGCATGGCTTCTTACGGTGAGTGAGACTGTCTCTGGTGTTTATTCTA
CACACAATGCGGGCATGGCTTAGTAGGCTGTGACCTCATTCCAGCTATCT
TGAAGCATTGTTAATGATCAGCTTCTCTCCCCTTTCAGGTTACAACATCT
GTACTGCTGGAAATATTCTTGAAACAACCTGTCAAACTTGCCGTGCAACA
TATAGCAGCTACTACCCTACGAAGAATCAAGGGAGGTTCCAGGAAGGAGG
TTCGGAGAAGTACAGCCCATGGTGGAGACGCCAAATCTGCATCTCAGAGA
AGTACCGGAAATGAAGCAGCCACTGTCATGGCTCCAGCACATAGTGGAGG
CGTCAAGAAGGACAGCAGCTCTATCAGACCTGCAGCTCAGAGAATTACTG
TGATCACTCCAACACATCGTGGTCCAGAGGATCAAGGACAAGTTGAAGGC
AGAGGGAGCTCTGCAAACAGAGGCACAGCAAGAGGTCGAATCATGAGCAA
CGAAGAGCATTGGCATGGTGGGAGCGACGGGCTGGGCCAGTGGCAAGACA
AGGAGAGAGGTGGTGCAGAGGGAGAGATGGACAAAAGATCAAGGAGACGG
CGAGAGGGTGGCTCCGCTCCCCCCTCCAGAGAAAGAAGAGGCAGGAATAG
AAGGGTCAGAGAGGCCGGAAGAGGAGAAAGGAGCCTGCCTGAGCTGGGGT
TTTAACCAGCAGCTGAAAATCCTTTGACCGCAGTGCAATAGTGCAACTGT
TCTTCATTTTGTTTTCGTGTTCAATTTTCAATCGCAAGGATATTATAATT
AGTGCGAATGGTTCTCAGAAGAGCGAACCAGACAGTCAGGTGTCAAACTC
CCGCTCACTTTGCACTTACTGTAGCCCTGCAACCAAGGGAGTGGGATGTG
CATGTCAGCAGAGGATGTGTCACCAGGGGCATCAAACAGCTGCAGCTTTT
TATGAGTCGTTGCCCCGGTTTGTCCCTGTCCGTGTGTTGCTAGTTACAGC
GCTGTCCTGGCTTCCTTTAGAGTTTAAAAGGGCACCCAATTC

Coding sequence (CDS) from alignment at C-australica_Contig_103:50865..53856+

>mRNA_C-australica_Contig_103.13.1 ID=mRNA_C-australica_Contig_103.13.1|Name=mRNA_C-australica_Contig_103.13.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1281bp|location=Sequence derived from alignment at C-australica_Contig_103:50865..53856+ (Chrysoparadoxa australica CS_1217)
ATGAAGGCGGACTGGGCTGATATGCTCCCATGGGAAAGGAAATGGTTCTG
CATGATGCTGGTTGTTAGCATATCAGATGTGGTTGGGCTCAGCCTTTCAG
TAATTGCGCTGTCTGCCTCAGTAACTTTGCTCCAGCAACTGGTATGGGGT
GTCCTTGGTGCAGGATGTGCCATGAGCGCTGCAATATCTGCAAACCTCGC
TTATGAAATTGTTCAGAACCGCAGCAACAACCACCGCAGCTTGCCGTACT
ATCGCAGCTTAATGGCTTTCCGTGACGCAGCCTCTTTCGTACAGGCACTG
TTCTCTGGCTTCCTGTGGCTGAGTGGTTCTCCCTCGCCAACTTTCATCAT
CTTCTTGTTAGCTGTCAGTAAGGGATTCTTGGTTGTTTCCGTTGAGCAAT
ACCAGATTTCCCTCGTCGACAACTCCCAAACGAAGACACAGCGACGCATG
CGGTTCCGCCATCGGCAACACGCTCCCAATGAGGTGGCAGCCATCATTAA
GGTCCAAGCCAGAGTCAGAATGATACTTGCAACCACAAGGATCCACCGCA
TGAATGAGTTCAGATGCTGGGAGCAGCATTGTGGCAAGACTCAACGGACG
ATGAAGGTGCTGTTTGTTCTCTTCCTCCTCATCTTTTCAACGGCAACCAT
GTTTGTGAACCTGGCATATTGCATCGTCTTCGATGCCAATACAACAAGAG
CATGGCTTCTTACGGTTACAACATCTGTACTGCTGGAAATATTCTTGAAA
CAACCTGTCAAACTTGCCGTGCAACATATAGCAGCTACTACCCTACGAAG
AATCAAGGGAGGTTCCAGGAAGGAGGTTCGGAGAAGTACAGCCCATGGTG
GAGACGCCAAATCTGCATCTCAGAGAAGTACCGGAAATGAAGCAGCCACT
GTCATGGCTCCAGCACATAGTGGAGGCGTCAAGAAGGACAGCAGCTCTAT
CAGACCTGCAGCTCAGAGAATTACTGTGATCACTCCAACACATCGTGGTC
CAGAGGATCAAGGACAAGTTGAAGGCAGAGGGAGCTCTGCAAACAGAGGC
ACAGCAAGAGGTCGAATCATGAGCAACGAAGAGCATTGGCATGGTGGGAG
CGACGGGCTGGGCCAGTGGCAAGACAAGGAGAGAGGTGGTGCAGAGGGAG
AGATGGACAAAAGATCAAGGAGACGGCGAGAGGGTGGCTCCGCTCCCCCC
TCCAGAGAAAGAAGAGGCAGGAATAGAAGGGTCAGAGAGGCCGGAAGAGG
AGAAAGGAGCCTGCCTGAGCTGGGGTTTTAA

mRNA_C-australica_Contig_103.13.1 (mRNA) Chrysoparadoxa australica CS_1217

ZOOM

x 1

POSITION

0