mRNA_C-australica_Contig_103.12.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_103.12.1
Unique NamemRNA_C-australica_Contig_103.12.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_103.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_103contigC-australica_Contig_103:47884..50984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1016
Hectar predicted targeting categoryother localisation
Exons12
Cds size1014
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_103.12.1prot_C-australica_Contig_103.12.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_103 47884..50984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586767.021394-CDS-C-australica_Contig_103:47883..479631682586767.021394-CDS-C-australica_Contig_103:47883..47963Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 47884..47963 +
1682586767.0323305-CDS-C-australica_Contig_103:48167..482461682586767.0323305-CDS-C-australica_Contig_103:48167..48246Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 48168..48246 +
1682586767.0527515-CDS-C-australica_Contig_103:48490..485721682586767.0527515-CDS-C-australica_Contig_103:48490..48572Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 48491..48572 +
1682586767.0630565-CDS-C-australica_Contig_103:48690..487991682586767.0630565-CDS-C-australica_Contig_103:48690..48799Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 48691..48799 +
1682586767.073626-CDS-C-australica_Contig_103:48956..490491682586767.073626-CDS-C-australica_Contig_103:48956..49049Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 48957..49049 +
1682586767.0851026-CDS-C-australica_Contig_103:49253..493731682586767.0851026-CDS-C-australica_Contig_103:49253..49373Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 49254..49373 +
1682586767.097726-CDS-C-australica_Contig_103:49478..495371682586767.097726-CDS-C-australica_Contig_103:49478..49537Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 49479..49537 +
1682586767.110558-CDS-C-australica_Contig_103:49735..498271682586767.110558-CDS-C-australica_Contig_103:49735..49827Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 49736..49827 +
1682586767.1254222-CDS-C-australica_Contig_103:50013..500821682586767.1254222-CDS-C-australica_Contig_103:50013..50082Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 50014..50082 +
1682586767.1393654-CDS-C-australica_Contig_103:50282..503281682586767.1393654-CDS-C-australica_Contig_103:50282..50328Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 50283..50328 +
1682586767.1538122-CDS-C-australica_Contig_103:50557..506261682586767.1538122-CDS-C-australica_Contig_103:50557..50626Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 50558..50626 +
1682586767.163045-CDS-C-australica_Contig_103:50868..509841682586767.163045-CDS-C-australica_Contig_103:50868..50984Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 50869..50984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_103.12.1

>prot_C-australica_Contig_103.12.1 ID=prot_C-australica_Contig_103.12.1|Name=mRNA_C-australica_Contig_103.12.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=338bp
AAVQAGGGSLTLPSDISEQIRRHRRLRNLEGDETAGLVLTHVNLPPETSA
LSGVVTAEIIIEGEKMSRFSSPLAVRVPISDGLGAEGVGCLSADGSSWVG
TGMVTSRVAADSITCSSWHLSDFAAFSLNLSVGKSRPATSNEAIIRQRFK
EDPVLALGALFGFLAVNVVFYLLMMVKERWSGAQKRRRDGMLKVYLATGK
ATSRDYTDEVHKAEQLPMPRGTMGNLIQLSTAVLKKHWVYALGHPQGGAL
LHSSQEQILLIVCHFLLLAAAQAIFYGTTSTSLEQRVAITLASTVIALPA
TLIFPKLLAIASVPPASATLKRQWRATRSIESASKVF*
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mRNA from alignment at C-australica_Contig_103:47884..50984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_103.12.1 ID=mRNA_C-australica_Contig_103.12.1|Name=mRNA_C-australica_Contig_103.12.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3101bp|location=Sequence derived from alignment at C-australica_Contig_103:47884..50984+ (Chrysoparadoxa australica CS_1217)
GCAGCGGTGCAAGCTGGGGGTGGGTCGCTTACACTGCCTAGCGATATATC
AGAGCAAATCAGAAGGCACCGCAGGCTGAGGTGGAGTGTTCAAATCTGCT
TGCGAACCTAACTTTATCTGAAAGCAAAAAAGCAAGAGTGGCAGACTGGC
AGGCAGTCTGACCTGATTGGCTCAACTACTCAACCCGAATGACATGGTTA
GCACTCTGCAGAATCCTGTAACCTTGCACCAACTAGCCCCAAGACGATGC
TCATGGCGCATGACCTGACCAATTGATGACTCAGGAACCTGGAGGGAGAC
GAGACTGCTGGTCTAGTACTAACACATGTCAATCTTCCTCCTGAGACTTC
CGCTCTCTCTGGGGTGGGTGTATTCACAGATACCAGCTTGATGCGGTTCA
GATCTTGCAGTTATATGTTGTAGTTATAAGCATTTAGCTTTAGCCAAGTA
CTGGGCATGCCCCAGTAGAATGGCACTCTGTAGCTGGCATCCCTTGACGA
TGCAAGTAGGGGCATAGATGCTTGTAGTCAGGCTCTATGTGTGGCTCTGC
CTTTTGCTTGATCTGCCAACTTAGACATGAGGCCACTCCTGCTCCGTACA
TATGCAGGTGGTCACAGCAGAGATAATCATAGAAGGGGAGAAAATGAGCA
GATTCTCATCACCTCTAGCAGTCAGGGTGCCAATCTCAGGTGCTCTCCAA
GGCGTCCAGTGCACATATCCTACCTTGGCTTACTTCAGCATCCCTGCTTC
ACTGCCAATGCATCGCGAAGCTGATATGACCAGGAGTAACTTCCCCTTTT
TTTGCAGATGGTTTGGGAGCTGAAGGTGTGGGATGTTTGTCTGCAGATGG
TAGCAGCTGGGTAGGCACTGGGATGGTGACCTCCAGAGTTGCCGCAGACT
CTATCACTTGCTCCAGGTCCAGTTACTAGAATAATATATGGCCAGGCACC
TCACTGAGAGACCTCACGTAACTGGCCAGAAAACATCTGCGCAACTTCCT
TCTCGCAATTAAGGCCAGAGCTCAGCAGAATTATGGAAGCAGCTCTAACA
TGACCTGCCCATCAATGTAACAGCTGGCACCTCAGTGACTTTGCAGCATT
TTCGCTGAATCTTTCCGTGGGTAAAAGCCGCCCAGCTACCTCCAATGAAG
CCATCATCAGACAGAGGTTTGTTGACTCATGCCAATCCTAACCCACCCAG
TCATATAATCCTAACCCACCCACTCATAAACGCTGAGTTAGTTTGCCGAT
CTAGATAACTATACCAACTGTTTTGATTTCCTTTGGGGAGGTTGGGACAT
GTTTAACTCGCATCCAGGCCTGGATTGGCTAACCAAGCAGCATCGCCATA
ACACGTTTCCACATTATAAGGTTCAAAGAAGACCCAGTTCTTGCCCTTGG
GGCATTATTTGGATTCCTTGCAGTAAATGTGGTGTTTTACTTACTCATGA
TGGTGAAAGAGCGTTGGTCAGGTGCTCAGAAAAGGAGAAGGTAGAAAGCT
CACTCATCCCATGCTCAGTGCAGTAAGCACATGATTCTACCCAGGGGTGG
TGGCTTGCCTGAACCAAACTGGCCCTTACTTCTCCGTTGCAACAGGGACG
GGATGCTAAAGGTATACCTGGCTACGGGCAAGGCTACCTCTAGAGATTAT
ACCGGTAAGACAAGAGAAAATGGCCAATGGGGTATGACCTTCGCAGCGAG
GGATCTTAGTATTATCTTCGAAGCAGACGAACTAGCTATTATCCCCTGGC
AAATCTTTTATAGTTCATTGCCCAAACTCCACTCCACATAAGGTTTGCCA
CTCACCAACGCATAACAAAGAAGTCTTGGTGTATCTCTTGTGCTCACGCT
AGATGAGGTTCACAAGGCGGAGCAATTGCCAATGCCCAGAGGCACGATGG
GGAACCTCATACAGCTGAGTACGGCTGTCTTGAAGAAACATTGGGTAAGA
GCTACCTGCCGATTGCCCTTGCATCATAACCTCTGATGCCACCATGAGCT
TTGGAAAAAGAATTGCAACATTTTAAGCTGTTCTATTCCTACTCAATCCT
GTCTCAAGCTACAGCATTCTGCCTTCCATCACTCCTCGGACACGTTCCGT
TGCTTGCTTCTCTATGCATGGCCATAACAGGTTTATGCACTAGGGCATCC
CCAGGGAGGAGCTCTACTGCACTCAAGCCAAGAGCAAATCTTGCTCATTG
TGCGTGTGAAATAAAGAATCCAACAGCATTCACACTGCTTCACATTCCCT
ATATTACTGCTGGCCTGACTGACCAATAGTTTGGCCATGGTTGGTCTGGT
CTTGAAGTCAGGGATGGGATAGCATACTCGAAAAGCACTATATCCTCCTC
TCAAACAGCAGCAGCACACCTCATTTCTTCTGCGCTTTCTTTTTCCTAGG
TGTGCCATTTCCTGCTTCTCGCAGCAGCGCAAGCCATATTCTATGGTAAG
CAGTGCAGCATGGAACTACTTGAAATCATGAAAATGATTTCAATCCCCTC
ACACATCTCCTAGACTCCATTGGATCAGCCTTACCTGATGCAATAGGTCA
GAGATGGTTGAGGGGCCTATAGCTAAATGGTGCCAGTCATGTTAGCTGCT
TCAGTATTGATCACGTTATAGCGTGGCCCGTAATGGCTGAGGTTTAACTG
AGCAGTATCTCTTACACCCGTCAGGCACCACAAGCACAAGTCTGGAACAG
AGGGTAGCCATTACGCTAGCATCAACCGTTATTGCACTCCCAGGTACTTT
TGCGGTGTGTTTTGGAAGGAGTACATGCGTATGAAGGCGCTGTGCTACCA
TTCGCTTAGCCCCTTGGTATCAATGGAGTGTACAAGAGTGCGCGTGGATG
TAATGAAGGAATTCATGTGTCATGTTTCTCCGAATTAGCACGGTATTGGG
TTAGCTGGGCGAAGAGTGGCTAGGTGGCCTGTGTTACAGCACTCTACTCA
GATTCCTTACTCTTCTTCTACCTTGCTGCCACCAGCTACTCTGATCTTCC
CCAAGCTTCTGGCAATAGCATCTGTCCCACCAGCTTCTGCTACCCTTAAG
CGACAATGGCGGGCAACACGCAGCATTGAAAGTGCATCAAAGGTATTCTG
A
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Coding sequence (CDS) from alignment at C-australica_Contig_103:47884..50984+

>mRNA_C-australica_Contig_103.12.1 ID=mRNA_C-australica_Contig_103.12.1|Name=mRNA_C-australica_Contig_103.12.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1014bp|location=Sequence derived from alignment at C-australica_Contig_103:47884..50984+ (Chrysoparadoxa australica CS_1217)
GCAGCGGTGCAAGCTGGGGGTGGGTCGCTTACACTGCCTAGCGATATATC
AGAGCAAATCAGAAGGCACCGCAGGCTGAGGAACCTGGAGGGAGACGAGA
CTGCTGGTCTAGTACTAACACATGTCAATCTTCCTCCTGAGACTTCCGCT
CTCTCTGGGGTGGTCACAGCAGAGATAATCATAGAAGGGGAGAAAATGAG
CAGATTCTCATCACCTCTAGCAGTCAGGGTGCCAATCTCAGATGGTTTGG
GAGCTGAAGGTGTGGGATGTTTGTCTGCAGATGGTAGCAGCTGGGTAGGC
ACTGGGATGGTGACCTCCAGAGTTGCCGCAGACTCTATCACTTGCTCCAG
CTGGCACCTCAGTGACTTTGCAGCATTTTCGCTGAATCTTTCCGTGGGTA
AAAGCCGCCCAGCTACCTCCAATGAAGCCATCATCAGACAGAGGTTCAAA
GAAGACCCAGTTCTTGCCCTTGGGGCATTATTTGGATTCCTTGCAGTAAA
TGTGGTGTTTTACTTACTCATGATGGTGAAAGAGCGTTGGTCAGGTGCTC
AGAAAAGGAGAAGGGACGGGATGCTAAAGGTATACCTGGCTACGGGCAAG
GCTACCTCTAGAGATTATACCGATGAGGTTCACAAGGCGGAGCAATTGCC
AATGCCCAGAGGCACGATGGGGAACCTCATACAGCTGAGTACGGCTGTCT
TGAAGAAACATTGGGTTTATGCACTAGGGCATCCCCAGGGAGGAGCTCTA
CTGCACTCAAGCCAAGAGCAAATCTTGCTCATTGTGTGCCATTTCCTGCT
TCTCGCAGCAGCGCAAGCCATATTCTATGGCACCACAAGCACAAGTCTGG
AACAGAGGGTAGCCATTACGCTAGCATCAACCGTTATTGCACTCCCAGCT
ACTCTGATCTTCCCCAAGCTTCTGGCAATAGCATCTGTCCCACCAGCTTC
TGCTACCCTTAAGCGACAATGGCGGGCAACACGCAGCATTGAAAGTGCAT
CAAAGGTATTCTGA
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