Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Seed ortholog | 2880.D7G398 |
| PFAMs | GPS,REJ |
| Model size | 349 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Evalue | 3.96e-05 |
| EggNOG OGs | KOG3599@1|root,KOG3599@2759|Eukaryota |
| Description | detection of mechanical stimulus |
| Cds size | 348 |
| COG category | E |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682586766.8586864-CDS-C-australica_Contig_103:42727..42750 | 1682586766.8586864-CDS-C-australica_Contig_103:42727..42750 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_103 42728..42750 + |
| 1682586766.8722477-CDS-C-australica_Contig_103:42834..42895 | 1682586766.8722477-CDS-C-australica_Contig_103:42834..42895 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_103 42835..42895 + |
| 1682586766.885205-CDS-C-australica_Contig_103:43085..43175 | 1682586766.885205-CDS-C-australica_Contig_103:43085..43175 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_103 43086..43175 + |
| 1682586766.894735-CDS-C-australica_Contig_103:43257..43351 | 1682586766.894735-CDS-C-australica_Contig_103:43257..43351 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_103 43258..43351 + |
| 1682586766.9073696-CDS-C-australica_Contig_103:43539..43584 | 1682586766.9073696-CDS-C-australica_Contig_103:43539..43584 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_103 43540..43584 + |
| 1682586766.9224784-CDS-C-australica_Contig_103:43678..43713 | 1682586766.9224784-CDS-C-australica_Contig_103:43678..43713 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_103 43679..43713 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_103.10.1 >prot_C-australica_Contig_103.10.1 ID=prot_C-australica_Contig_103.10.1|Name=mRNA_C-australica_Contig_103.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=116bp
AGGNYIEVVRSRRQVIKAVVTMPTCDGEEPTLASFQTTWAEVTGDEYASL
LSEPLNDLAQGDTIVLPKYSLGPAGSRHKLSVTVSTAAIGGASTTAYVEI
LVKPGALTAVIFGGKT back to topmRNA from alignment at C-australica_Contig_103:42728..43714+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_103.10.1 ID=mRNA_C-australica_Contig_103.10.1|Name=mRNA_C-australica_Contig_103.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=987bp|location=Sequence derived from alignment at C-australica_Contig_103:42728..43714+ (Chrysoparadoxa australica CS_1217)
GCAGGAGGTAATTACATTGAAGTGTAAGTACACCACCTCTTGCTTATGTT
AGCTCTTTTTGACTAGTCAAGCATGTAGCTCAGACGTACACTTAACTGCC
ATCTCAGAGTGAGGAGCAGGCGGCAAGTAATCAAAGCAGTGGTGACTATG
CCAACATGCGATGGCGAGGTACTTAACACCAGCAAAAAGTGTTTGAGAAG
AAACAGAGCAGCTGCACTCAACAATGTCAAGCTAGTATAAAACCTCACAT
CCAGTCACAGCCTTGACCTGCAGAGAGTTCGTCGCTTCAGCCATCCCTAG
GCCACCTTCTTTTCCAATTGAGGATTAATAGAAGCCACCTTCTTTCTCCA
TCAATCAGGAACCTACCCTAGCCAGCTTTCAGACAACATGGGCGGAGGTC
ACTGGTGATGAATACGCTTCACTGCTCAGTGAACCATTGAATGACTTGGT
ATGATTAATATGTCTGCCATTCTGTCCCTAGCTGATATCATAAGAGGGAT
TAAAGTTTCCCTTGTCTTGATCTGAAATAGGCACAAGGCGATACTATTGT
CCTACCGAAGTACAGCCTGGGTCCAGCAGGTAGCCGTCACAAGCTCTCAG
TTACAGTGTCAACAGCAGCTATAGGTTTGTTAATTATAACCTGAGCTCCC
TGCCGTGGCGTCACATGAAGTACCTTTACCTCATAAGATGGTTCAGAGCT
GGAAATCGCTGCACACGATTGTGTGCAAGAGGATCGAATGCACTGGTGGC
TGCTTTTGCCAAGCCCCTAGCATAGTTTGATCTGACATCAATGAACTCTA
ACCGTGTTGAAGGTGGAGCATCTACCACTGCATATGTGGAGATTCTAGTC
AAGCCGGGTAGGTTATGTATGCAATTTCCCCGTAGTGGATTTGACTTGAT
GAAAATTCAGCCTGCCTGCATGAAATTTACAAGATGTGTGTCATGTCCCA
GGGGCTTTGACGGCAGTCATTTTTGGAGGGAAAACAC back to topCoding sequence (CDS) from alignment at C-australica_Contig_103:42728..43714+ >mRNA_C-australica_Contig_103.10.1 ID=mRNA_C-australica_Contig_103.10.1|Name=mRNA_C-australica_Contig_103.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=348bp|location=Sequence derived from alignment at C-australica_Contig_103:42728..43714+ (Chrysoparadoxa australica CS_1217)
GCAGGAGGTAATTACATTGAAGTAGTGAGGAGCAGGCGGCAAGTAATCAA
AGCAGTGGTGACTATGCCAACATGCGATGGCGAGGAACCTACCCTAGCCA
GCTTTCAGACAACATGGGCGGAGGTCACTGGTGATGAATACGCTTCACTG
CTCAGTGAACCATTGAATGACTTGGCACAAGGCGATACTATTGTCCTACC
GAAGTACAGCCTGGGTCCAGCAGGTAGCCGTCACAAGCTCTCAGTTACAG
TGTCAACAGCAGCTATAGGTGGAGCATCTACCACTGCATATGTGGAGATT
CTAGTCAAGCCGGGGGCTTTGACGGCAGTCATTTTTGGAGGGAAAACA back to top
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