mRNA_C-australica_Contig_10292.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10292.1.1
Unique NamemRNA_C-australica_Contig_10292.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI001472A34E (SDR family oxidoreductase n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI001472A34E)

HSP 1 Score: 317 bits (812), Expect = 2.440e-106
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 2
Query:  323 MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826
            MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV
Sbjct:    1 MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 168          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI0011AEE16A (ABC transporter ATP-binding protein n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI0011AEE16A)

HSP 1 Score: 184 bits (468), Expect = 4.020e-54
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1
Query:    1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 297
            SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH
Sbjct:  150 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 248          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI0015631D49 (ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sediminum TaxID=1849104 RepID=UPI0015631D49)

HSP 1 Score: 163 bits (413), Expect = 4.780e-46
Identity = 84/99 (84.85%), Postives = 96/99 (96.97%), Query Frame = 1
Query:    1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 297
            SGGEQQQVAIGRALMT+PKV+MMDEPSAGLSP++VDTLIDTIR+LG+ GLTVLLVEQNVGVAV+VA+EA+VL+AG IA+HRPA ELLRDKS+LAAYLGH
Sbjct:  136 SGGEQQQVAIGRALMTNPKVVMMDEPSAGLSPALVDTLIDTIRKLGEDGLTVLLVEQNVGVAVHVASEAVVLKAGAIALHRPANELLRDKSLLAAYLGH 234          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI0016630613 (SDR family oxidoreductase n=1 Tax=Azorhizobium oxalatiphilum TaxID=980631 RepID=UPI0016630613)

HSP 1 Score: 152 bits (384), Expect = 1.540e-41
Identity = 93/171 (54.39%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  323 MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFG---AVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826
            +RVAISGA G +G A+A  FAA GA LVL+DRD   L       G   A   VCDQ+     AR    IG VDVFVNNAG+++RK LL+  DD+I  VLNVN+ G+  MA+GMAR MR+    R GVI N+++  AF GG GRGIY+ SKA +VQFT+ AGAE A  GIRV
Sbjct:   10 LRVAISGAAGAIGAATARVFAARGASLVLIDRDEAALSGLRHALGEAVAQVVVCDQAAGEETARALREIGVVDVFVNNAGVLLRKPLLETDDDDIAHVLNVNVVGATRMAIGMARAMRA--AGRPGVILNVSSHQAFVGGMGRGIYSMSKAALVQFTRTAGAEWAPHGIRV 178          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A225MRP0_9BURK (ABC transporter ATP-binding protein n=1 Tax=Candidimonas nitroreducens TaxID=683354 RepID=A0A225MRP0_9BURK)

HSP 1 Score: 150 bits (379), Expect = 5.810e-41
Identity = 78/99 (78.79%), Postives = 92/99 (92.93%), Query Frame = 1
Query:    1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 297
            SGGEQQQVAIGRALM+DPKV+MMDEPSAGLSP+MVDTLIDTIR LG++GLTVLLVEQNVGVA++ A +AIVL+AG IA+ RPA+EL  D+++LAAYLGH
Sbjct:  136 SGGEQQQVAIGRALMSDPKVVMMDEPSAGLSPNMVDTLIDTIRTLGERGLTVLLVEQNVGVAMHSATDAIVLKAGVIAVSRPASELFSDRALLAAYLGH 234          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A1T4JKA3_9HYPH (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4JKA3_9HYPH)

HSP 1 Score: 116 bits (290), Expect = 1.230e-27
Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 2
Query:  305 EANYSGMRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFG-AVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSI-LMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826
            + ++   R+ I+GA    G A A  F AAGA+LVL D + + L   A+R G A  HV DQ+D ++V    EA GAVD+ +NNAG++V K LLD   +E+  V++V+L G++ LM L  A  +R    RR GVI ++ +Q AF+GG  R IYA +KA I Q TKAA  E    G+RV
Sbjct:    6 DLDFHSRRILITGAANGFGAAMAGLFHAAGADLVLADIEDQPLAEVAQRCGNAEVHVYDQADPASVGSLAEAAGAVDILINNAGVLVAKPLLDTGLEEMRRVIDVDLIGAVRLMQLVGAGMVR----RRQGVILSIGSQTAFSGGENRAIYAAAKAAISQVTKAAAVEWGPHGVRV 177          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A2E5PPA1_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PPA1_9PROT)

HSP 1 Score: 116 bits (290), Expect = 1.250e-27
Identity = 78/174 (44.83%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  311 NYSGMRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFG--AVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826
            N+SG R+ I+GA G +G A A AFAA G E++L D     L   A+  G  A     DQSD +++A    A G VD+F NNAG+M     L+ + + I  ++ V+L G IL+A  +   M +   R  GVI N A+Q AF G   R  YAT+KAGIVQFTK+A AELA  G+RV
Sbjct:    8 NFSGRRILITGAAGGIGSAMAAAFAAHGGEVILADIATENLAEQADVLGNGASFLRYDQSDSASIATLATAAGPVDIFCNNAGMMQAGAFLEQSPEIIARMITVDLTGPILLARYIGEGMVA---RGSGVIVNTASQLAFHGAAYRTAYATAKAGIVQFTKSAAAELAPHGVRV 178          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A2E6G8U9_9GAMM (ABC transporter ATP-binding protein n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2E6G8U9_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 6.830e-27
Identity = 58/98 (59.18%), Postives = 77/98 (78.57%), Query Frame = 1
Query:    1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLG 294
            SGGEQQ VA+ RA++  PK+++MDEPS GL+P +VD +I TI+ L D+GLT+L+VEQNVGVA  VA EA VL+ G I  H PAAEL++++ VL +YLG
Sbjct:  136 SGGEQQMVAVARAMIARPKLLLMDEPSVGLAPKIVDEIIATIKTLRDRGLTILIVEQNVGVAAAVAEEAFVLKDGAIGHHGPAAELMQNEEVLKSYLG 233          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A1W1XMZ2_9DELT (Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) n=1 Tax=Desulfacinum hydrothermale DSM 13146 TaxID=1121390 RepID=A0A1W1XMZ2_9DELT)

HSP 1 Score: 112 bits (279), Expect = 4.050e-26
Identity = 55/98 (56.12%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLG 294
            SGGEQQ VAIGRALM++PKV+M+DEPS GL+P +VD ++DT+RRL ++G+T+LLVEQNV  A+++A  A V+Q+G++ +    A+LL +  V +AYLG
Sbjct:  140 SGGEQQMVAIGRALMSEPKVLMLDEPSLGLAPKLVDEVLDTVRRLKNEGVTILLVEQNVREALDLADRAYVIQSGRVVLEGTGADLLENPEVKSAYLG 237          
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A383AI16_9ZZZZ (ABC transporter domain-containing protein (Fragment) n=5 Tax=root TaxID=1 RepID=A0A383AI16_9ZZZZ)

HSP 1 Score: 111 bits (277), Expect = 4.590e-26
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLG 294
            SGGEQQQVA+GRALM  PK+++MDEPS GLSP +V  +I+TIR+L   GLT+L+VEQNVGVA  VA +A VL+ G IA    A +L+ D  VLA+YLG
Sbjct:  117 SGGEQQQVALGRALMAKPKLLLMDEPSVGLSPLIVAAVIETIRQLHASGLTILIVEQNVGVAAAVAEDAYVLKDGAIAYSGSAPDLINDPEVLASYLG 214          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001472A34E2.440e-106100.00SDR family oxidoreductase n=1 Tax=Roseovarius conf... [more]
UPI0011AEE16A4.020e-54100.00ABC transporter ATP-binding protein n=1 Tax=Roseov... [more]
UPI0015631D494.780e-4684.85ABC transporter ATP-binding protein n=1 Tax=Mesorh... [more]
UPI00166306131.540e-4154.39SDR family oxidoreductase n=1 Tax=Azorhizobium oxa... [more]
A0A225MRP0_9BURK5.810e-4178.79ABC transporter ATP-binding protein n=1 Tax=Candid... [more]
A0A1T4JKA3_9HYPH1.230e-2744.322-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Enhydr... [more]
A0A2E5PPA1_9PROT1.250e-2744.83Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2E6G8U9_9GAMM6.830e-2759.18ABC transporter ATP-binding protein n=1 Tax=Portic... [more]
A0A1W1XMZ2_9DELT4.050e-2656.12Amino acid/amide ABC transporter ATP-binding prote... [more]
A0A383AI16_9ZZZZ4.590e-2661.22ABC transporter domain-containing protein (Fragmen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10292contigC-australica_Contig_10292:2..827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog702113.PP1Y_AT29189
PFAMsadh_short_C2
Model size826
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.71e-25
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MXWI@1224|Proteobacteria,2TQQ6@28211|Alphaproteobacteria,2K4DP@204457|Sphingomonadales
DescriptionKR domain
Cds size636
COG categoryIQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.303276-UTR-C-australica_Contig_10292:1..1911682586765.303276-UTR-C-australica_Contig_10292:1..191Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10292 2..191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.3139615-CDS-C-australica_Contig_10292:191..8271682586765.3139615-CDS-C-australica_Contig_10292:191..827Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10292 192..827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10292.1.1prot_C-australica_Contig_10292.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10292 192..827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10292.1.1

>prot_C-australica_Contig_10292.1.1 ID=prot_C-australica_Contig_10292.1.1|Name=mRNA_C-australica_Contig_10292.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=212bp
MWRPRPSSCRLARSPCTGRRPNCCAINRCLPPTWGTEMEANYSGMRVAIS
GAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVHHVCDQSDR
SAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILM
ALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKA
AGAELALEGIRV
back to top

mRNA from alignment at C-australica_Contig_10292:2..827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10292.1.1 ID=mRNA_C-australica_Contig_10292.1.1|Name=mRNA_C-australica_Contig_10292.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=826bp|location=Sequence derived from alignment at C-australica_Contig_10292:2..827+ (Chrysoparadoxa australica CS_1217)
TCTGGCGGAGAGCAGCAGCAGGTCGCGATTGGCCGCGCCCTGATGACCGA TCCCAAAGTGATAATGATGGACGAACCCTCGGCCGGATTGTCGCCTTCCA TGGTCGACACTTTGATCGACACGATCCGCCGCCTCGGAGATCAGGGGCTG ACCGTTCTGTTGGTCGAACAGAATGTGGGCGTTGCGGTGAATGTGGCGGC CGAGGCCATCGTCCTGCAGGCTGGCAAGATCGCCATGCACCGGCCGGCGG CCGAACTGTTGCGCGATAAATCGGTGCTTGCCGCCTACTTGGGGCACTGA GATGGAGGCGAACTATTCAGGCATGCGTGTCGCGATCAGCGGGGCCGGAG GCGATCTCGGTCAGGCATCGGCGGAAGCGTTTGCCGCGGCCGGGGCTGAA CTTGTGCTCGTTGACCGGGATCCGCGTCGCCTCAAGGCGACGGCAGAGAG GTTCGGAGCGGTTCATCACGTGTGCGACCAGTCGGACCGGTCTGCCGTGG CTCGAACCTGTGAGGCCATCGGAGCGGTTGATGTTTTCGTGAACAACGCG GGCATAATGGTGCGGAAAAACCTTCTCGATCACACCGATGACGAGATCGA TGCCGTTCTCAACGTCAATCTTCGCGGGTCGATCCTTATGGCGCTTGGCA TGGCCCGGCAGATGCGCTCAAACAAGGGCCGCCGCGGGGGAGTTATCTGC AACCTCGCCACGCAGCATGCGTTTGCTGGCGGAGGCGGGCGCGGCATTTA CGCCACCTCGAAAGCTGGCATCGTTCAATTCACGAAAGCGGCCGGAGCAG AACTCGCGCTTGAGGGTATTCGCGTC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_10292:2..827+

>mRNA_C-australica_Contig_10292.1.1 ID=mRNA_C-australica_Contig_10292.1.1|Name=mRNA_C-australica_Contig_10292.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=636bp|location=Sequence derived from alignment at C-australica_Contig_10292:2..827+ (Chrysoparadoxa australica CS_1217)
ATGTGGCGGCCGAGGCCATCGTCCTGCAGGCTGGCAAGATCGCCATGCAC
CGGCCGGCGGCCGAACTGTTGCGCGATAAATCGGTGCTTGCCGCCTACTT
GGGGCACTGAGATGGAGGCGAACTATTCAGGCATGCGTGTCGCGATCAGC
GGGGCCGGAGGCGATCTCGGTCAGGCATCGGCGGAAGCGTTTGCCGCGGC
CGGGGCTGAACTTGTGCTCGTTGACCGGGATCCGCGTCGCCTCAAGGCGA
CGGCAGAGAGGTTCGGAGCGGTTCATCACGTGTGCGACCAGTCGGACCGG
TCTGCCGTGGCTCGAACCTGTGAGGCCATCGGAGCGGTTGATGTTTTCGT
GAACAACGCGGGCATAATGGTGCGGAAAAACCTTCTCGATCACACCGATG
ACGAGATCGATGCCGTTCTCAACGTCAATCTTCGCGGGTCGATCCTTATG
GCGCTTGGCATGGCCCGGCAGATGCGCTCAAACAAGGGCCGCCGCGGGGG
AGTTATCTGCAACCTCGCCACGCAGCATGCGTTTGCTGGCGGAGGCGGGC
GCGGCATTTACGCCACCTCGAAAGCTGGCATCGTTCAATTCACGAAAGCG
GCCGGAGCAGAACTCGCGCTTGAGGGTATTCGCGTC
back to top