mRNA_C-australica_Contig_10292.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI001472A34E (SDR family oxidoreductase n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI001472A34E) HSP 1 Score: 317 bits (812), Expect = 2.440e-106 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 2 Query: 323 MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826 MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV Sbjct: 1 MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFGAVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 168
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI0011AEE16A (ABC transporter ATP-binding protein n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI0011AEE16A) HSP 1 Score: 184 bits (468), Expect = 4.020e-54 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 Query: 1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 297 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH Sbjct: 150 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 248
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI0015631D49 (ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sediminum TaxID=1849104 RepID=UPI0015631D49) HSP 1 Score: 163 bits (413), Expect = 4.780e-46 Identity = 84/99 (84.85%), Postives = 96/99 (96.97%), Query Frame = 1 Query: 1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 297 SGGEQQQVAIGRALMT+PKV+MMDEPSAGLSP++VDTLIDTIR+LG+ GLTVLLVEQNVGVAV+VA+EA+VL+AG IA+HRPA ELLRDKS+LAAYLGH Sbjct: 136 SGGEQQQVAIGRALMTNPKVVMMDEPSAGLSPALVDTLIDTIRKLGEDGLTVLLVEQNVGVAVHVASEAVVLKAGAIALHRPANELLRDKSLLAAYLGH 234
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: UPI0016630613 (SDR family oxidoreductase n=1 Tax=Azorhizobium oxalatiphilum TaxID=980631 RepID=UPI0016630613) HSP 1 Score: 152 bits (384), Expect = 1.540e-41 Identity = 93/171 (54.39%), Postives = 113/171 (66.08%), Query Frame = 2 Query: 323 MRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFG---AVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826 +RVAISGA G +G A+A FAA GA LVL+DRD L G A VCDQ+ AR IG VDVFVNNAG+++RK LL+ DD+I VLNVN+ G+ MA+GMAR MR+ R GVI N+++ AF GG GRGIY+ SKA +VQFT+ AGAE A GIRV Sbjct: 10 LRVAISGAAGAIGAATARVFAARGASLVLIDRDEAALSGLRHALGEAVAQVVVCDQAAGEETARALREIGVVDVFVNNAGVLLRKPLLETDDDDIAHVLNVNVVGATRMAIGMARAMRA--AGRPGVILNVSSHQAFVGGMGRGIYSMSKAALVQFTRTAGAEWAPHGIRV 178
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A225MRP0_9BURK (ABC transporter ATP-binding protein n=1 Tax=Candidimonas nitroreducens TaxID=683354 RepID=A0A225MRP0_9BURK) HSP 1 Score: 150 bits (379), Expect = 5.810e-41 Identity = 78/99 (78.79%), Postives = 92/99 (92.93%), Query Frame = 1 Query: 1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLGH 297 SGGEQQQVAIGRALM+DPKV+MMDEPSAGLSP+MVDTLIDTIR LG++GLTVLLVEQNVGVA++ A +AIVL+AG IA+ RPA+EL D+++LAAYLGH Sbjct: 136 SGGEQQQVAIGRALMSDPKVVMMDEPSAGLSPNMVDTLIDTIRTLGERGLTVLLVEQNVGVAMHSATDAIVLKAGVIAVSRPASELFSDRALLAAYLGH 234
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A1T4JKA3_9HYPH (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4JKA3_9HYPH) HSP 1 Score: 116 bits (290), Expect = 1.230e-27 Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 2 Query: 305 EANYSGMRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFG-AVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSI-LMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826 + ++ R+ I+GA G A A F AAGA+LVL D + + L A+R G A HV DQ+D ++V EA GAVD+ +NNAG++V K LLD +E+ V++V+L G++ LM L A +R RR GVI ++ +Q AF+GG R IYA +KA I Q TKAA E G+RV Sbjct: 6 DLDFHSRRILITGAANGFGAAMAGLFHAAGADLVLADIEDQPLAEVAQRCGNAEVHVYDQADPASVGSLAEAAGAVDILINNAGVLVAKPLLDTGLEEMRRVIDVDLIGAVRLMQLVGAGMVR----RRQGVILSIGSQTAFSGGENRAIYAAAKAAISQVTKAAAVEWGPHGVRV 177
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A2E5PPA1_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PPA1_9PROT) HSP 1 Score: 116 bits (290), Expect = 1.250e-27 Identity = 78/174 (44.83%), Postives = 103/174 (59.20%), Query Frame = 2 Query: 311 NYSGMRVAISGAGGDLGQASAEAFAAAGAELVLVDRDPRRLKATAERFG--AVHHVCDQSDRSAVARTCEAIGAVDVFVNNAGIMVRKNLLDHTDDEIDAVLNVNLRGSILMALGMARQMRSNKGRRGGVICNLATQHAFAGGGGRGIYATSKAGIVQFTKAAGAELALEGIRV 826 N+SG R+ I+GA G +G A A AFAA G E++L D L A+ G A DQSD +++A A G VD+F NNAG+M L+ + + I ++ V+L G IL+A + M + R GVI N A+Q AF G R YAT+KAGIVQFTK+A AELA G+RV Sbjct: 8 NFSGRRILITGAAGGIGSAMAAAFAAHGGEVILADIATENLAEQADVLGNGASFLRYDQSDSASIATLATAAGPVDIFCNNAGMMQAGAFLEQSPEIIARMITVDLTGPILLARYIGEGMVA---RGSGVIVNTASQLAFHGAAYRTAYATAKAGIVQFTKSAAAELAPHGVRV 178
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A2E6G8U9_9GAMM (ABC transporter ATP-binding protein n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2E6G8U9_9GAMM) HSP 1 Score: 114 bits (284), Expect = 6.830e-27 Identity = 58/98 (59.18%), Postives = 77/98 (78.57%), Query Frame = 1 Query: 1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLG 294 SGGEQQ VA+ RA++ PK+++MDEPS GL+P +VD +I TI+ L D+GLT+L+VEQNVGVA VA EA VL+ G I H PAAEL++++ VL +YLG Sbjct: 136 SGGEQQMVAVARAMIARPKLLLMDEPSVGLAPKIVDEIIATIKTLRDRGLTILIVEQNVGVAAAVAEEAFVLKDGAIGHHGPAAELMQNEEVLKSYLG 233
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A1W1XMZ2_9DELT (Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-) n=1 Tax=Desulfacinum hydrothermale DSM 13146 TaxID=1121390 RepID=A0A1W1XMZ2_9DELT) HSP 1 Score: 112 bits (279), Expect = 4.050e-26 Identity = 55/98 (56.12%), Postives = 79/98 (80.61%), Query Frame = 1 Query: 1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLG 294 SGGEQQ VAIGRALM++PKV+M+DEPS GL+P +VD ++DT+RRL ++G+T+LLVEQNV A+++A A V+Q+G++ + A+LL + V +AYLG Sbjct: 140 SGGEQQMVAIGRALMSEPKVLMLDEPSLGLAPKLVDEVLDTVRRLKNEGVTILLVEQNVREALDLADRAYVIQSGRVVLEGTGADLLENPEVKSAYLG 237
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Match: A0A383AI16_9ZZZZ (ABC transporter domain-containing protein (Fragment) n=5 Tax=root TaxID=1 RepID=A0A383AI16_9ZZZZ) HSP 1 Score: 111 bits (277), Expect = 4.590e-26 Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 1 Query: 1 SGGEQQQVAIGRALMTDPKVIMMDEPSAGLSPSMVDTLIDTIRRLGDQGLTVLLVEQNVGVAVNVAAEAIVLQAGKIAMHRPAAELLRDKSVLAAYLG 294 SGGEQQQVA+GRALM PK+++MDEPS GLSP +V +I+TIR+L GLT+L+VEQNVGVA VA +A VL+ G IA A +L+ D VLA+YLG Sbjct: 117 SGGEQQQVALGRALMAKPKLLLMDEPSVGLSPLIVAAVIETIRQLHASGLTILIVEQNVGVAAAVAEDAYVLKDGAIAYSGSAPDLINDPEVLASYLG 214 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10292.1.1 >prot_C-australica_Contig_10292.1.1 ID=prot_C-australica_Contig_10292.1.1|Name=mRNA_C-australica_Contig_10292.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=212bp MWRPRPSSCRLARSPCTGRRPNCCAINRCLPPTWGTEMEANYSGMRVAISback to top mRNA from alignment at C-australica_Contig_10292:2..827+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10292.1.1 ID=mRNA_C-australica_Contig_10292.1.1|Name=mRNA_C-australica_Contig_10292.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=826bp|location=Sequence derived from alignment at C-australica_Contig_10292:2..827+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10292:2..827+ >mRNA_C-australica_Contig_10292.1.1 ID=mRNA_C-australica_Contig_10292.1.1|Name=mRNA_C-australica_Contig_10292.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=636bp|location=Sequence derived from alignment at C-australica_Contig_10292:2..827+ (Chrysoparadoxa australica CS_1217)back to top |