mRNA_C-australica_Contig_10289.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10289.1.1
Unique NamemRNA_C-australica_Contig_10289.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: UPI000CDDB40D (ATP-binding protein n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI000CDDB40D)

HSP 1 Score: 312 bits (800), Expect = 9.710e-107
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 1
Query:    1 LESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            +ESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYA GDGNATLEVEDD
Sbjct:    1 MESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYACGDGNATLEVEDD 162          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A318SYN7_9RHOB (Two-component sensor histidine kinase n=1 Tax=Pseudoroseicyclus aestuarii TaxID=1795041 RepID=A0A318SYN7_9RHOB)

HSP 1 Score: 105 bits (263), Expect = 2.190e-25
Identity = 59/156 (37.82%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   19 IGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            + T D  + Q  + L E EHRH N +QI+S L+R   + A   E REA  + ++L+  +  L  L+ + + G  +D L S+++QW+ IC+  I I++       ++Q++  +V L+AQELV NAIKHAFP+ R G + V +    D  A L VEDD
Sbjct:    5 LATKDPTDAQGDMRLREIEHRHSNLMQIVSGLLRSRERMADHDETREAFRYATDLLHAVSTLNRLSAKESGGSVSDHLNSLSKQWRAICDDRIAIILRCGNLGPLSQSEKVVVGLLAQELVFNAIKHAFPDGRRGDIKVFVSCQEDQTALLIVEDD 160          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: UPI001FA7E35C (hypothetical protein n=1 Tax=Caulobacter sp. CCUG 60055 TaxID=2100090 RepID=UPI001FA7E35C)

HSP 1 Score: 82.4 bits (202), Expect = 1.570e-16
Identity = 54/141 (38.30%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   67 EAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQR-ICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            E  HR  N LQ+L++L R  L   + AEAR  + W+ E    LG L         GD +  L  MA  W+R I    +RI +EAEP + + +N  + + +I  ELV NAI HAF + R G + V+L   G   A L V DD
Sbjct:   10 ELRHRLSNVLQLLTTLGRMRLSRTQDAEARRQVGWLLEATGALGVLHHRIGAAEAGDFSAFLTEMAPVWRRRIGRRPVRIEIEAEPVV-VRENSASALAVIVNELVSNAIVHAFADGRPGCITVKLRGAGRDAAELAVSDD 149          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A2D8WX02_PARSX (Histidine kinase n=1 Tax=Paracoccus sp. TaxID=267 RepID=A0A2D8WX02_PARSX)

HSP 1 Score: 80.5 bits (197), Expect = 7.740e-15
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   55 LLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADL---LGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAG-GDGNATLEVEDD 486
            +L  E +HR  N+LQ L+SLVR + + A+  E  EALS +   ++ + RL         G   DL   + ++      I   H+R+ V+A+  L ++  Q   V  +  E V N+ KHAFP+ RHG VHV    G GDG   L   DD
Sbjct:  169 MLRKEVDHRVKNSLQSLASLVRLAARRARHRETAEALSTLQSRIDAVARLHEELYRSDGGRIVDLGRYMANLTGHLAEIAPSHVRLQVKAD-NLAVSSEQAVAVGTLVNEFVQNSFKHAFPDGRHGMVHVTAERGSGDGKVQLTCRDD 315          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: UPI001F43EACC (CHASE3 domain-containing protein n=1 Tax=Devosia sp. SL43 TaxID=2806348 RepID=UPI001F43EACC)

HSP 1 Score: 75.9 bits (185), Expect = 4.550e-13
Identity = 55/156 (35.26%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   31 DRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTA---DLLGSMARQWQRICNGHIRIVVEAE-PGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            +RE E+   LL ++ HR GN+L  +SSL+   L  +K+ E R+AL      V  +       R G   +TA   D L ++         G   + +  E   + +     T V ++  ELV NA+KHAFPE R GTV VRL    DG  TL V DD
Sbjct:  241 ERERERVEALLQDSSHRIGNSLATVSSLLGLQLIRSKSDEVRQALEAARSRVHAIASAHRRLRLGDDLETASADDFLDAVLEDLASTVTGTKAVTLTGEIDPIVIGARDATTVGILVGELVTNALKHAFPEDRSGTVTVRLRRDADGVPTLTVTDD 396          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A1B1AGW7_9PROT (Histidine kinase n=1 Tax=Candidatus Viadribacter manganicus TaxID=1759059 RepID=A0A1B1AGW7_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 6.920e-13
Identity = 48/150 (32.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:   55 LLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQ-GLTREGAQGDTADL---LGSMARQWQRICNGH--IRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            L+L E +HR  N+LQ+++SL+    + A  A  R  L   +  V+T+ R+   L    A  D  DL   + +M    Q +  G   ++I+V A P +K A +    + L   EL++NA++HAFP++R+G+V + + A  +G   ++V DD
Sbjct:   45 LMLREGDHRIKNSLQVVASLLGMQARRASNASTRNVLHAAAARVQTVARIHDALQLNNASNDVVDLGALVENMCASLQEMTGGSDAVQIIVHASP-IKTALDLAQPIVLAVNELIINALRHAFPQERNGSVTITV-AESNGQLKIQVADD 192          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A127MEX4_9SPHN (HATPase_c domain-containing protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MEX4_9SPHN)

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-12
Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   55 LLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTR--EGAQGDTADLLGSMARQ--WQRIC---------NGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            +LL E +HR  N L ILSSL+    Q ++ +E + AL   +      GR+  L++  E  + D  D +  +  Q    R+C         +G I+++V AEP  ++++++   V L+  ELV NA+KHAF ++  GT+ V L A  DG A LEV DD
Sbjct:  148 MLLAEVDHRVKNNLAILSSLLALQQQKSENSEVKSALGRAA------GRVHSLSKAYESLRYDNLDNIAIVDMQDFLNRLCGSLREALTLDGRIKLIVAAEP-CQLSRDRAGAVGLLVNELVTNAVKHAFVDRDKGTIRVELRAVSDG-AVLEVRDD 296          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A839PU33_9HYPH (Two-component sensor histidine kinase n=1 Tax=Mesorhizobium sp. RMAD-H1 TaxID=2587065 RepID=A0A839PU33_9HYPH)

HSP 1 Score: 73.6 bits (179), Expect = 2.900e-12
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   31 DRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTA---DLLGSMARQWQRICNGHIRI-VVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            +RE ++   LL ++ HR GN+L  +SSL+   L+ A   +AR  L    + V+T+       R G   +T    + L ++    +       RI  + A   L +     T + +I  ELV NA+KHAFP+ R GTVHVR   G DG   L V DD
Sbjct:  240 ERERQRVEALLQDSNHRIGNSLATVSSLLGLQLRQATNEDARRVLIAARDRVQTISTAHRRLRLGEDLETVRVDEFLQAVIDDIRVSLTSGDRINFITAFAPLNLNARDVTTIGIILGELVTNAVKHAFPDNRRGTVHVRFDRGEDGVLALTVADD 395          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A506UBS0_9HYPH (PAS domain-containing protein n=2 Tax=Pararhizobium mangrovi TaxID=2590452 RepID=A0A506UBS0_9HYPH)

HSP 1 Score: 72.8 bits (177), Expect = 4.310e-12
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   43 EQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREG---AQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVED 483
            EQ+ LLL+E +HR  N LQ++S+++R   + +K A A+EAL      VETLG +     E    A  D ++ +   A++     +  I +V+E  P +++     + ++L+  E++ NA++HAF E   GT+ VR    G+ N  L +ED
Sbjct:  160 EQKTLLLHEVDHRVKNNLQMISAMIRSQARFSKDAAAKEALRTTLSRVETLGIVHRRLYESSDVASFDLSEFIRETAKELVDSRDSGIELVLELVP-VEVPARAASPLSLLLNEIITNAMQHAFAEDAGGTIAVRTSQDGE-NCILAIED 307          
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A1E4GHB7_9HYPH (Histidine kinase domain-containing protein n=1 Tax=Pelagibacterium sp. SCN 64-44 TaxID=1660125 RepID=A0A1E4GHB7_9HYPH)

HSP 1 Score: 72.4 bits (176), Expect = 7.410e-12
Identity = 49/157 (31.21%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   31 DRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRIC-----NGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486
            +RE ++   LL +  HR GN+L  +SSL+   +  + + E ++AL      V  +       R G   ++A     ++   + I       G IR+  +  P + ++    T + ++  ELV NA+KHAFPE R G++HVRL+    G   LEVEDD
Sbjct:  242 ERERQRVETLLQDTNHRVGNSLATVSSLLALQVMRSHSTEVQQALEAARLRVHAIASAHRRLRLGDDLESASADEFLSAVIEDIAATQTDGGRIRLSGDIAP-IDVSARDATTLGILVGELVTNALKHAFPEGRSGSIHVRLFRDAGGTPVLEVEDD 397          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000CDDB40D9.710e-10798.77ATP-binding protein n=1 Tax=Roseovarius confluenti... [more]
A0A318SYN7_9RHOB2.190e-2537.82Two-component sensor histidine kinase n=1 Tax=Pseu... [more]
UPI001FA7E35C1.570e-1638.30hypothetical protein n=1 Tax=Caulobacter sp. CCUG ... [more]
A0A2D8WX02_PARSX7.740e-1535.14Histidine kinase n=1 Tax=Paracoccus sp. TaxID=267 ... [more]
UPI001F43EACC4.550e-1335.26CHASE3 domain-containing protein n=1 Tax=Devosia s... [more]
A0A1B1AGW7_9PROT6.920e-1332.00Histidine kinase n=1 Tax=Candidatus Viadribacter m... [more]
A0A127MEX4_9SPHN2.100e-1235.03HATPase_c domain-containing protein n=1 Tax=Sphing... [more]
A0A839PU33_9HYPH2.900e-1233.97Two-component sensor histidine kinase n=1 Tax=Meso... [more]
A0A506UBS0_9HYPH4.310e-1232.67PAS domain-containing protein n=2 Tax=Pararhizobiu... [more]
A0A1E4GHB7_9HYPH7.410e-1231.21Histidine kinase domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10289contigC-australica_Contig_10289:344..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123501.KB902313_gene2796
PFAMsHATPase_c_2,HisKA_2
Model size486
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.45e-13
EggNOG OGsCOG3920@1|root,COG3920@2|Bacteria,1NJ3A@1224|Proteobacteria,2UNBX@28211|Alphaproteobacteria
DescriptionHistidine kinase-like ATPase domain
Cds size486
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586764.7847207-CDS-C-australica_Contig_10289:343..8291682586764.7847207-CDS-C-australica_Contig_10289:343..829Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10289 344..829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10289.1.1prot_C-australica_Contig_10289.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10289 344..829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10289.1.1

>prot_C-australica_Contig_10289.1.1 ID=prot_C-australica_Contig_10289.1.1|Name=mRNA_C-australica_Contig_10289.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=162bp
LESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAE
AREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIR
IVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAG
GDGNATLEVEDD
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mRNA from alignment at C-australica_Contig_10289:344..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10289.1.1 ID=mRNA_C-australica_Contig_10289.1.1|Name=mRNA_C-australica_Contig_10289.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=486bp|location=Sequence derived from alignment at C-australica_Contig_10289:344..829+ (Chrysoparadoxa australica CS_1217)
TTGGAGTCCAATACCTCTATCGGCACGGGTGACCGGGAAAACGAGCAGGA GTTGCTGCTGCTCAACGAAGCGGAGCACAGGCATGGCAACACGCTTCAGA TCCTGTCGAGCCTTGTCAGGCGCAGCCTGCAGGACGCCAAGACAGCCGAG GCGCGCGAGGCGCTGAGCTGGGTCAGCGAGTTGGTCGAAACGCTCGGCCG GCTGCAGGGCCTGACGCGCGAAGGCGCGCAGGGCGATACGGCCGACCTGC TTGGCAGCATGGCACGACAGTGGCAGCGCATCTGCAACGGCCATATTCGT ATCGTGGTCGAGGCCGAGCCTGGGCTGAAGATGGCACAAAACCAGCATAC GATCGTCACCCTGATCGCGCAGGAACTGGTGCTCAACGCGATCAAGCACG CCTTCCCGGAACAGCGCCACGGCACGGTTCATGTCCGGCTCTATGCTGGT GGGGACGGAAATGCTACTCTCGAGGTGGAAGATGAC
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Coding sequence (CDS) from alignment at C-australica_Contig_10289:344..829+

>mRNA_C-australica_Contig_10289.1.1 ID=mRNA_C-australica_Contig_10289.1.1|Name=mRNA_C-australica_Contig_10289.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=486bp|location=Sequence derived from alignment at C-australica_Contig_10289:344..829+ (Chrysoparadoxa australica CS_1217)
TTGGAGTCCAATACCTCTATCGGCACGGGTGACCGGGAAAACGAGCAGGA
GTTGCTGCTGCTCAACGAAGCGGAGCACAGGCATGGCAACACGCTTCAGA
TCCTGTCGAGCCTTGTCAGGCGCAGCCTGCAGGACGCCAAGACAGCCGAG
GCGCGCGAGGCGCTGAGCTGGGTCAGCGAGTTGGTCGAAACGCTCGGCCG
GCTGCAGGGCCTGACGCGCGAAGGCGCGCAGGGCGATACGGCCGACCTGC
TTGGCAGCATGGCACGACAGTGGCAGCGCATCTGCAACGGCCATATTCGT
ATCGTGGTCGAGGCCGAGCCTGGGCTGAAGATGGCACAAAACCAGCATAC
GATCGTCACCCTGATCGCGCAGGAACTGGTGCTCAACGCGATCAAGCACG
CCTTCCCGGAACAGCGCCACGGCACGGTTCATGTCCGGCTCTATGCTGGT
GGGGACGGAAATGCTACTCTCGAGGTGGAAGATGAC
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