mRNA_C-australica_Contig_10289.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: UPI000CDDB40D (ATP-binding protein n=1 Tax=Roseovarius confluentis TaxID=1852027 RepID=UPI000CDDB40D) HSP 1 Score: 312 bits (800), Expect = 9.710e-107 Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 1 Query: 1 LESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 +ESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYA GDGNATLEVEDD Sbjct: 1 MESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYACGDGNATLEVEDD 162
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A318SYN7_9RHOB (Two-component sensor histidine kinase n=1 Tax=Pseudoroseicyclus aestuarii TaxID=1795041 RepID=A0A318SYN7_9RHOB) HSP 1 Score: 105 bits (263), Expect = 2.190e-25 Identity = 59/156 (37.82%), Postives = 91/156 (58.33%), Query Frame = 1 Query: 19 IGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 + T D + Q + L E EHRH N +QI+S L+R + A E REA + ++L+ + L L+ + + G +D L S+++QW+ IC+ I I++ ++Q++ +V L+AQELV NAIKHAFP+ R G + V + D A L VEDD Sbjct: 5 LATKDPTDAQGDMRLREIEHRHSNLMQIVSGLLRSRERMADHDETREAFRYATDLLHAVSTLNRLSAKESGGSVSDHLNSLSKQWRAICDDRIAIILRCGNLGPLSQSEKVVVGLLAQELVFNAIKHAFPDGRRGDIKVFVSCQEDQTALLIVEDD 160
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: UPI001FA7E35C (hypothetical protein n=1 Tax=Caulobacter sp. CCUG 60055 TaxID=2100090 RepID=UPI001FA7E35C) HSP 1 Score: 82.4 bits (202), Expect = 1.570e-16 Identity = 54/141 (38.30%), Postives = 73/141 (51.77%), Query Frame = 1 Query: 67 EAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQR-ICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 E HR N LQ+L++L R L + AEAR + W+ E LG L GD + L MA W+R I +RI +EAEP + + +N + + +I ELV NAI HAF + R G + V+L G A L V DD Sbjct: 10 ELRHRLSNVLQLLTTLGRMRLSRTQDAEARRQVGWLLEATGALGVLHHRIGAAEAGDFSAFLTEMAPVWRRRIGRRPVRIEIEAEPVV-VRENSASALAVIVNELVSNAIVHAFADGRPGCITVKLRGAGRDAAELAVSDD 149
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A2D8WX02_PARSX (Histidine kinase n=1 Tax=Paracoccus sp. TaxID=267 RepID=A0A2D8WX02_PARSX) HSP 1 Score: 80.5 bits (197), Expect = 7.740e-15 Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1 Query: 55 LLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADL---LGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAG-GDGNATLEVEDD 486 +L E +HR N+LQ L+SLVR + + A+ E EALS + ++ + RL G DL + ++ I H+R+ V+A+ L ++ Q V + E V N+ KHAFP+ RHG VHV G GDG L DD Sbjct: 169 MLRKEVDHRVKNSLQSLASLVRLAARRARHRETAEALSTLQSRIDAVARLHEELYRSDGGRIVDLGRYMANLTGHLAEIAPSHVRLQVKAD-NLAVSSEQAVAVGTLVNEFVQNSFKHAFPDGRHGMVHVTAERGSGDGKVQLTCRDD 315
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: UPI001F43EACC (CHASE3 domain-containing protein n=1 Tax=Devosia sp. SL43 TaxID=2806348 RepID=UPI001F43EACC) HSP 1 Score: 75.9 bits (185), Expect = 4.550e-13 Identity = 55/156 (35.26%), Postives = 76/156 (48.72%), Query Frame = 1 Query: 31 DRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTA---DLLGSMARQWQRICNGHIRIVVEAE-PGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 +RE E+ LL ++ HR GN+L +SSL+ L +K+ E R+AL V + R G +TA D L ++ G + + E + + T V ++ ELV NA+KHAFPE R GTV VRL DG TL V DD Sbjct: 241 ERERERVEALLQDSSHRIGNSLATVSSLLGLQLIRSKSDEVRQALEAARSRVHAIASAHRRLRLGDDLETASADDFLDAVLEDLASTVTGTKAVTLTGEIDPIVIGARDATTVGILVGELVTNALKHAFPEDRSGTVTVRLRRDADGVPTLTVTDD 396
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A1B1AGW7_9PROT (Histidine kinase n=1 Tax=Candidatus Viadribacter manganicus TaxID=1759059 RepID=A0A1B1AGW7_9PROT) HSP 1 Score: 73.9 bits (180), Expect = 6.920e-13 Identity = 48/150 (32.00%), Postives = 82/150 (54.67%), Query Frame = 1 Query: 55 LLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQ-GLTREGAQGDTADL---LGSMARQWQRICNGH--IRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 L+L E +HR N+LQ+++SL+ + A A R L + V+T+ R+ L A D DL + +M Q + G ++I+V A P +K A + + L EL++NA++HAFP++R+G+V + + A +G ++V DD Sbjct: 45 LMLREGDHRIKNSLQVVASLLGMQARRASNASTRNVLHAAAARVQTVARIHDALQLNNASNDVVDLGALVENMCASLQEMTGGSDAVQIIVHASP-IKTALDLAQPIVLAVNELIINALRHAFPQERNGSVTITV-AESNGQLKIQVADD 192
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A127MEX4_9SPHN (HATPase_c domain-containing protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MEX4_9SPHN) HSP 1 Score: 73.6 bits (179), Expect = 2.100e-12 Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 1 Query: 55 LLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTR--EGAQGDTADLLGSMARQ--WQRIC---------NGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 +LL E +HR N L ILSSL+ Q ++ +E + AL + GR+ L++ E + D D + + Q R+C +G I+++V AEP ++++++ V L+ ELV NA+KHAF ++ GT+ V L A DG A LEV DD Sbjct: 148 MLLAEVDHRVKNNLAILSSLLALQQQKSENSEVKSALGRAA------GRVHSLSKAYESLRYDNLDNIAIVDMQDFLNRLCGSLREALTLDGRIKLIVAAEP-CQLSRDRAGAVGLLVNELVTNAVKHAFVDRDKGTIRVELRAVSDG-AVLEVRDD 296
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A839PU33_9HYPH (Two-component sensor histidine kinase n=1 Tax=Mesorhizobium sp. RMAD-H1 TaxID=2587065 RepID=A0A839PU33_9HYPH) HSP 1 Score: 73.6 bits (179), Expect = 2.900e-12 Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 1 Query: 31 DRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTA---DLLGSMARQWQRICNGHIRI-VVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 +RE ++ LL ++ HR GN+L +SSL+ L+ A +AR L + V+T+ R G +T + L ++ + RI + A L + T + +I ELV NA+KHAFP+ R GTVHVR G DG L V DD Sbjct: 240 ERERQRVEALLQDSNHRIGNSLATVSSLLGLQLRQATNEDARRVLIAARDRVQTISTAHRRLRLGEDLETVRVDEFLQAVIDDIRVSLTSGDRINFITAFAPLNLNARDVTTIGIILGELVTNAVKHAFPDNRRGTVHVRFDRGEDGVLALTVADD 395
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A506UBS0_9HYPH (PAS domain-containing protein n=2 Tax=Pararhizobium mangrovi TaxID=2590452 RepID=A0A506UBS0_9HYPH) HSP 1 Score: 72.8 bits (177), Expect = 4.310e-12 Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 1 Query: 43 EQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREG---AQGDTADLLGSMARQWQRICNGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVED 483 EQ+ LLL+E +HR N LQ++S+++R + +K A A+EAL VETLG + E A D ++ + A++ + I +V+E P +++ + ++L+ E++ NA++HAF E GT+ VR G+ N L +ED Sbjct: 160 EQKTLLLHEVDHRVKNNLQMISAMIRSQARFSKDAAAKEALRTTLSRVETLGIVHRRLYESSDVASFDLSEFIRETAKELVDSRDSGIELVLELVP-VEVPARAASPLSLLLNEIITNAMQHAFAEDAGGTIAVRTSQDGE-NCILAIED 307
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Match: A0A1E4GHB7_9HYPH (Histidine kinase domain-containing protein n=1 Tax=Pelagibacterium sp. SCN 64-44 TaxID=1660125 RepID=A0A1E4GHB7_9HYPH) HSP 1 Score: 72.4 bits (176), Expect = 7.410e-12 Identity = 49/157 (31.21%), Postives = 79/157 (50.32%), Query Frame = 1 Query: 31 DRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEAREALSWVSELVETLGRLQGLTREGAQGDTADLLGSMARQWQRIC-----NGHIRIVVEAEPGLKMAQNQHTIVTLIAQELVLNAIKHAFPEQRHGTVHVRLYAGGDGNATLEVEDD 486 +RE ++ LL + HR GN+L +SSL+ + + + E ++AL V + R G ++A ++ + I G IR+ + P + ++ T + ++ ELV NA+KHAFPE R G++HVRL+ G LEVEDD Sbjct: 242 ERERQRVETLLQDTNHRVGNSLATVSSLLALQVMRSHSTEVQQALEAARLRVHAIASAHRRLRLGDDLESASADEFLSAVIEDIAATQTDGGRIRLSGDIAP-IDVSARDATTLGILVGELVTNALKHAFPEGRSGSIHVRLFRDAGGTPVLEVEDD 397 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10289.1.1 >prot_C-australica_Contig_10289.1.1 ID=prot_C-australica_Contig_10289.1.1|Name=mRNA_C-australica_Contig_10289.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=162bp LESNTSIGTGDRENEQELLLLNEAEHRHGNTLQILSSLVRRSLQDAKTAEback to top mRNA from alignment at C-australica_Contig_10289:344..829+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10289.1.1 ID=mRNA_C-australica_Contig_10289.1.1|Name=mRNA_C-australica_Contig_10289.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=486bp|location=Sequence derived from alignment at C-australica_Contig_10289:344..829+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10289:344..829+ >mRNA_C-australica_Contig_10289.1.1 ID=mRNA_C-australica_Contig_10289.1.1|Name=mRNA_C-australica_Contig_10289.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=486bp|location=Sequence derived from alignment at C-australica_Contig_10289:344..829+ (Chrysoparadoxa australica CS_1217)back to top |