mRNA_C-australica_Contig_10288.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10288.1.1
Unique NamemRNA_C-australica_Contig_10288.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: UPI0003B77772 (GDYXXLXY domain-containing protein n=1 Tax=Oceanicaulis alexandrii TaxID=153233 RepID=UPI0003B77772)

HSP 1 Score: 432 bits (1112), Expect = 2.170e-152
Identity = 217/245 (88.57%), Postives = 227/245 (92.65%), Query Frame = 1
Query:    1 MIKVTFLARAAIGLAVILLGLGWMALTHDTGRSAGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAVFATLEEATATGAPILKAELVEAYAPEGEEPEVFRIRFDLPGQYFADPETAIALQTDFQTANTMQGRRDRWETCRNLQQTAPDQFEQSWMCEDFDPADEPRADIHEYGVILSVSDRGEAVIKGLYLDGQRLYDSLTGPRLTLERDA 735
            MIKV+FLARAAIGLAVIL GLGWM LTH+T RS+GREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVS+P +DPR FQ GETVYVALNPS+LFA PGAVFAT E A A GAP LKAELVEAYAPEGEEPEVF +RFDLP QYFADPETAIALQTDFQTAN MQGRRDRWETCR+LQQTAPD+FEQSWMCEDFD ADEPRADI EYGVILSVS+ GEAVIKGLYLDGQRLYDSLTGPRLTLERDA
Sbjct:    1 MIKVSFLARAAIGLAVILGGLGWMTLTHETARSSGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSVPRRDPRDFQTGETVYVALNPSELFAMPGAVFATREAAAAAGAPFLKAELVEAYAPEGEEPEVFWVRFDLPSQYFADPETAIALQTDFQTANAMQGRRDRWETCRDLQQTAPDRFEQSWMCEDFDLADEPRADIPEYGVILSVSETGEAVIKGLYLDGQRLYDSLTGPRLTLERDA 245          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: A3UHX3_9PROT (Uncharacterized protein n=2 Tax=unclassified Oceanicaulis TaxID=2632123 RepID=A3UHX3_9PROT)

HSP 1 Score: 317 bits (811), Expect = 1.460e-106
Identity = 158/244 (64.75%), Postives = 187/244 (76.64%), Query Frame = 1
Query:    1 MIKVTFLARAAIGLAVILLGLGWMALTHDTGRSAGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAVFATLEEATATGAPILKAELVEAYAPEGEEPEVFRIRFDLPGQYFADPETAIALQTDFQTANTMQGRRDRWETCRNLQQTAPDQFEQSWMCEDFDPADEPRADIHEYGVILSVSDRGEAVIKGLYLDGQRLYDSLTGPRLTLERD 732
            MI +++LARA +GLAVIL  LGWM + H+  RS+G EV+LQT P+DPRDVFFGHYA+L+YRDFG  DV L W   +G + G+TVY AL P+  F  PG  FA+ EEA + G P+LKA L   Y PEGE P+V+  RFDLP QYFADPETA+ALQ DFQTA  MQG+RD WE CR+LQQ+ P+ FEQ+W C D D ADEP ADI EYGVILSVSD GEAVIKGLYLDG+R+ D+LTGPRL  ERD
Sbjct:    1 MIGMSYLARAGLGLAVILAFLGWMTVRHEQARSSGIEVVLQTYPIDPRDVFFGHYAVLSYRDFGTSDVPLGWPLEQGLEPGDTVYFALTPAGEFHQPGEAFASPEEALSQGGPVLKAYLHTPYVPEGETPDVYFARFDLPRQYFADPETALALQDDFQTATQMQGQRDNWEHCRDLQQSDPEGFEQAWRCGDIDLADEPTADIPEYGVILSVSDTGEAVIKGLYLDGERVIDTLTGPRLVRERD 244          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: A0A8J6LXV0_9PROT (GDYXXLXY domain-containing protein n=2 Tax=Euryhalocaulis TaxID=1712422 RepID=A0A8J6LXV0_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 2.280e-14
Identity = 54/161 (33.54%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   16 FLARAAIGLAVILLGLGWMALTHDT---GRSAGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAVFATLEEATATGAPILKAELVEAYAPEGEEPE-------VFRIRFDLPGQYFADPETAIALQTD 468
            FL  A I + V     G++A+T       R+ G E++L+  PVDPRD+  GHY  L+Y      D+S    D   F++G+++++ L P D  A P A++ +       G  IL+   + A     ++PE           RFDLP +Y+AD ETA+AL+T+
Sbjct:    4 FLRSALIAILVT----GFLAVTAGRQIMARNGGEELVLEAAPVDPRDILLGHYVALSYA-IERLDLSALEGDD-AFESGDSLFLELTPEDGAARPAAIYKSWP--AQPGGVILEGRAITAARASTQDPEGVPGSGRFLIARFDLPRRYYADAETALALETE 156          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: A0A166UL27_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya valderiana BDU 20041 TaxID=322866 RepID=A0A166UL27_9CYAN)

HSP 1 Score: 61.6 bits (148), Expect = 6.210e-8
Identity = 50/169 (29.59%), Postives = 80/169 (47.34%), Query Frame = 1
Query:   19 LARAAIGLAVILLGLGWMALTHDTGRSAGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAVFATLEEATATGAPILK--------------AELVEAYAP-------EGEEPEVFRIRFDLPGQYFADPETAIALQ 462
            L   A+ + V+L G   M   H   R+ G+E++L+  PVDPRD+  GHY I++         +L   D  G++ G  V+VAL         GA+ AT         P ++              AE +E  +P       EG + +V R+R++L  +Y+A P+ A+AL+
Sbjct:    7 LCAVALAMTVVLAG---MVGLHAANRAGGQEILLEMEPVDPRDLLLGHYVIIDTSLHRLDTAALAGPDT-GWRRGRPVFVALEAGG----DGAMHATGAFRAPPEPPFIRGRIAHVSTQFDHAPAEPLEDGSPGLRRDPVEGSQRDVLRVRYNLE-RYYASPDQALALE 166          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: UPI000845D5C5 (GDYXXLXY domain-containing protein n=1 Tax=Neptunicoccus sediminis TaxID=1892596 RepID=UPI000845D5C5)

HSP 1 Score: 60.5 bits (145), Expect = 1.210e-7
Identity = 60/210 (28.57%), Postives = 83/210 (39.52%), Query Frame = 1
Query:   88 TGRSAGREVILQTNPVDPRDVFFGHYAILNY------RDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAVFATLEEATATGAPILKAELVEAYAPEGEEPEVFRIRFDLPGQYFADPETAIALQTDFQTANTMQGRRDRWETCRNLQQTAPDQFEQSWMCEDFDPADEPRADIHEYGVILSVSDRGEAVIKGLYLDGQRLYDS 699
            T   +GREV+L+T  +DPRD+F GHY  LN       RD         W DP        VY AL+ +  FA   ++  T  E      P+L      A           RI F    ++FA  + A+ L                 E+ R  Q                           + GVILSV+D G A+IKGL ++GQ++YD+
Sbjct:   30 TALQSGREVLLETGFIDPRDLFRGHYTALNLNISQIPRDSVTLHGRFTWNDP--------VYAALDTTGPFAQVQSLHDTYPEDF--NGPVLAGR---AQFQSSASDNTLRIAFPFD-RFFAPKDRALEL-----------------ESLRREQ---------------------------KLGVILSVADDGSALIKGLTIEGQKIYDA 181          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: A0A0X3U3U3_9GAMM (Uncharacterized protein n=1 Tax=Microbulbifer sp. ZGT114 TaxID=1685377 RepID=A0A0X3U3U3_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 1.480e-7
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   19 LARAAIGLAVILLGLGWMALTHDTGRSAGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPSD--LFATPGAVFATLEEATATGAPILKAELV-EAYAPEGEEPEVFRIRFDLPGQYFADPETAIALQTD 468
            LA A +   ++L+G   M +T       G+E+ ++T PVDPR +F G+YA L Y  F + D  +  QD R  +NGE VYV+L P    L+   GA     E+        L+  +  + +  EG    V+RIR+ +   +FA  E A+AL+++
Sbjct:   12 LAAALLFQFLVLIG---MVVTAQVPLWTGQEIRIETIPVDPRSLFRGNYARLQYA-FSELDTGVFGQD-RPLRNGEVVYVSLTPDKQGLYRFAGASLQEPEDGV-----FLRGRVSGQWWRREGN---VYRIRYGIEA-FFAPKERALALESE 150          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: UPI00166CA819 (GDYXXLXY domain-containing protein n=1 Tax=Amylibacter cionae TaxID=2035344 RepID=UPI00166CA819)

HSP 1 Score: 59.7 bits (143), Expect = 2.290e-7
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 1
Query:   88 TGRSAGREVILQTNPVDPRDVFFGHYAILNY------RDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAVFATLEEATATGAPILKAELVEAYAPEGEEPEVFRIRFDLPGQYFADPETAIALQ 462
            T   +G+EV+L+T  +DPRD+F GHYA+LN       R+    + S  W DP        VYVAL+ S  FA P ++  T    T    P++K     A    G + +  RI F    ++FA  E A+ L+
Sbjct:   30 TTLQSGQEVLLETGFIDPRDLFRGHYAVLNLQISRIDRNSVSVNGSFTWNDP--------VYVALDTSGPFAQPVSLHDTYP--TDFDGPVIKGN---ALFTSGSDSQTLRIDFPFD-RFFAPQERALELE 146          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: A0A0E3P404_9EURY (Uncharacterized protein n=3 Tax=Methanosarcina siciliae TaxID=38027 RepID=A0A0E3P404_9EURY)

HSP 1 Score: 55.1 bits (131), Expect = 1.120e-5
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 1
Query:  103 GREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAVFAT 309
            G+E++L+T PVDPRD+F G Y ILNY +    D+     + R F+  + VY+AL   D +  P  +++T
Sbjct:   32 GKEILLKTEPVDPRDLFRGDYVILNY-EISILDLEKIPAEDRHFEYNDRVYLALAVEDGYGVPKKIYST 99          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: A0A4Q2LX91_9BACL (Uncharacterized protein n=1 Tax=Paenibacillaceae bacterium TaxID=2003592 RepID=A0A4Q2LX91_9BACL)

HSP 1 Score: 54.3 bits (129), Expect = 1.670e-5
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   46 VILLGLGWMALTHDTGRSAGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLP---WQDPRGFQNGETVYVALNPSD 276
            ++LLGL   AL++      G+E+ L+T PVDPRD+F+G Y +L+Y         LP   WQD R    GE VYV L  ++
Sbjct:   20 IVLLGL---ALSNTAIERFGKEIRLETAPVDPRDLFYGDYVVLHYA-----ISQLPREMWQDDRLPVEGERVYVRLRAAE 91          
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Match: UPI001CD360C4 (GDYXXLXY domain-containing protein n=2 Tax=unclassified Alkalihalobacillus TaxID=2675276 RepID=UPI001CD360C4)

HSP 1 Score: 53.9 bits (128), Expect = 2.060e-5
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 1
Query:   40 LAVILLGLGWMALTHDTGRSAGREVILQTNPVDPRDVFFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPS 273
            +A+ +L L  +A TH      G +VIL+T P+DPRD+F+G Y  LNY D     + L   D  G    E VYV L+ S
Sbjct:   10 IALQVLSLIGIAATHYMTLKFGEQVILKTEPIDPRDIFYGDYVTLNY-DISTLSLDLLHDD--GIDERERVYVILHKS 84          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10288.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
UPI0003B777722.170e-15288.57GDYXXLXY domain-containing protein n=1 Tax=Oceanic... [more]
A3UHX3_9PROT1.460e-10664.75Uncharacterized protein n=2 Tax=unclassified Ocean... [more]
A0A8J6LXV0_9PROT2.280e-1433.54GDYXXLXY domain-containing protein n=2 Tax=Euryhal... [more]
A0A166UL27_9CYAN6.210e-829.59Uncharacterized protein n=1 Tax=Leptolyngbya valde... [more]
UPI000845D5C51.210e-728.57GDYXXLXY domain-containing protein n=1 Tax=Neptuni... [more]
A0A0X3U3U3_9GAMM1.480e-733.33Uncharacterized protein n=1 Tax=Microbulbifer sp. ... [more]
UPI00166CA8192.290e-734.35GDYXXLXY domain-containing protein n=1 Tax=Amyliba... [more]
A0A0E3P404_9EURY1.120e-539.13Uncharacterized protein n=3 Tax=Methanosarcina sic... [more]
A0A4Q2LX91_9BACL1.670e-541.25Uncharacterized protein n=1 Tax=Paenibacillaceae b... [more]
UPI001CD360C42.060e-541.03GDYXXLXY domain-containing protein n=2 Tax=unclass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10288contigC-australica_Contig_10288:91..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122613.ATUP01000001_gene1214
PFAMsGDYXXLXY
Model size738
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.56e-153
EggNOG OGsCOG4929@1|root,COG4929@2|Bacteria,1Q2A1@1224|Proteobacteria,2V9PT@28211|Alphaproteobacteria,440DD@69657|Hyphomonadaceae
DescriptionGDYXXLXY protein
Cds size738
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586764.7529476-CDS-C-australica_Contig_10288:90..8281682586764.7529476-CDS-C-australica_Contig_10288:90..828Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10288 91..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10288.1.1prot_C-australica_Contig_10288.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10288 91..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10288.1.1

>prot_C-australica_Contig_10288.1.1 ID=prot_C-australica_Contig_10288.1.1|Name=mRNA_C-australica_Contig_10288.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=246bp
MIKVTFLARAAIGLAVILLGLGWMALTHDTGRSAGREVILQTNPVDPRDV
FFGHYAILNYRDFGDRDVSLPWQDPRGFQNGETVYVALNPSDLFATPGAV
FATLEEATATGAPILKAELVEAYAPEGEEPEVFRIRFDLPGQYFADPETA
IALQTDFQTANTMQGRRDRWETCRNLQQTAPDQFEQSWMCEDFDPADEPR
ADIHEYGVILSVSDRGEAVIKGLYLDGQRLYDSLTGPRLTLERDA*
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mRNA from alignment at C-australica_Contig_10288:91..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10288.1.1 ID=mRNA_C-australica_Contig_10288.1.1|Name=mRNA_C-australica_Contig_10288.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=738bp|location=Sequence derived from alignment at C-australica_Contig_10288:91..828- (Chrysoparadoxa australica CS_1217)
ATGATCAAGGTCACTTTCCTGGCGCGCGCCGCGATCGGTCTGGCTGTGAT CCTGCTTGGGCTGGGCTGGATGGCGCTCACTCATGATACGGGCCGGTCCG CAGGGCGAGAAGTGATCCTGCAGACCAATCCGGTGGATCCGCGCGACGTG TTCTTCGGCCATTACGCCATCTTGAACTATCGCGACTTTGGCGACCGGGA CGTGTCCCTGCCCTGGCAAGATCCGCGTGGCTTTCAAAACGGCGAGACCG TGTATGTGGCGCTCAATCCCTCAGATCTGTTCGCGACACCCGGCGCAGTC TTCGCAACTCTTGAAGAGGCGACAGCAACAGGCGCCCCGATCCTGAAAGC GGAACTGGTCGAAGCCTACGCCCCTGAAGGCGAAGAGCCTGAGGTCTTCC GGATCCGGTTTGACCTGCCCGGCCAGTATTTCGCCGACCCTGAAACCGCG ATTGCCCTGCAAACCGATTTTCAAACGGCGAACACCATGCAAGGACGGCG TGATCGGTGGGAGACCTGCCGTAATCTTCAGCAAACCGCGCCGGATCAGT TCGAACAGTCCTGGATGTGCGAGGATTTTGACCCAGCCGATGAACCTCGG GCGGACATCCATGAATACGGGGTGATCCTGTCGGTCTCGGATCGGGGGGA GGCTGTGATCAAGGGGCTCTATCTGGATGGTCAGCGTCTCTATGACAGCC TGACAGGTCCCAGACTGACGCTAGAGCGCGATGCGTAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10288:91..828-

>mRNA_C-australica_Contig_10288.1.1 ID=mRNA_C-australica_Contig_10288.1.1|Name=mRNA_C-australica_Contig_10288.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=738bp|location=Sequence derived from alignment at C-australica_Contig_10288:91..828- (Chrysoparadoxa australica CS_1217)
ATGATCAAGGTCACTTTCCTGGCGCGCGCCGCGATCGGTCTGGCTGTGAT
CCTGCTTGGGCTGGGCTGGATGGCGCTCACTCATGATACGGGCCGGTCCG
CAGGGCGAGAAGTGATCCTGCAGACCAATCCGGTGGATCCGCGCGACGTG
TTCTTCGGCCATTACGCCATCTTGAACTATCGCGACTTTGGCGACCGGGA
CGTGTCCCTGCCCTGGCAAGATCCGCGTGGCTTTCAAAACGGCGAGACCG
TGTATGTGGCGCTCAATCCCTCAGATCTGTTCGCGACACCCGGCGCAGTC
TTCGCAACTCTTGAAGAGGCGACAGCAACAGGCGCCCCGATCCTGAAAGC
GGAACTGGTCGAAGCCTACGCCCCTGAAGGCGAAGAGCCTGAGGTCTTCC
GGATCCGGTTTGACCTGCCCGGCCAGTATTTCGCCGACCCTGAAACCGCG
ATTGCCCTGCAAACCGATTTTCAAACGGCGAACACCATGCAAGGACGGCG
TGATCGGTGGGAGACCTGCCGTAATCTTCAGCAAACCGCGCCGGATCAGT
TCGAACAGTCCTGGATGTGCGAGGATTTTGACCCAGCCGATGAACCTCGG
GCGGACATCCATGAATACGGGGTGATCCTGTCGGTCTCGGATCGGGGGGA
GGCTGTGATCAAGGGGCTCTATCTGGATGGTCAGCGTCTCTATGACAGCC
TGACAGGTCCCAGACTGACGCTAGAGCGCGATGCGTAG
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