mRNA_C-australica_Contig_10284.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: E4PIJ9_MARAH (Methyl-accepting chemotaxis sensory transducer n=25 Tax=Marinobacter TaxID=2742 RepID=E4PIJ9_MARAH) HSP 1 Score: 407 bits (1045), Expect = 1.490e-135 Identity = 274/276 (99.28%), Postives = 274/276 (99.28%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAEQDTETVRG 828 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAEQDTET RG Sbjct: 198 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAEQDTETGRG 473
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: A0A1I6I4I3_9GAMM (Methyl-accepting chemotaxis protein n=1 Tax=Marinobacter gudaonensis TaxID=375760 RepID=A0A1I6I4I3_9GAMM) HSP 1 Score: 350 bits (897), Expect = 2.520e-113 Identity = 186/219 (84.93%), Postives = 206/219 (94.06%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVN 657 RAKSYGI+ALVEGQVGYALSETLNEIYDQLTNR+SLL+PAL++AS+ASPAL +AG+A+ +VDESLMVVRD LD NVITPMRLEMPWTEYD LMS QL +YD++K AAF VV++NLR RL+SEINQR LI+VAL+AVLLVVVYLYIGFFMSVRTAINRFS+AAR+VAAGDMTTHI LRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVN Sbjct: 198 RAKSYGIYALVEGQVGYALSETLNEIYDQLTNRSSLLTPALSVASDASPALVAKAGDALNKVDESLMVVRDELDQNVITPMRLEMPWTEYDSLMSAQLGYYDELKQAAFEVVETNLRGRLDSEINQRTLILVALVAVLLVVVYLYIGFFMSVRTAINRFSQAARSVAAGDMTTHIHLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVN 416
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: A0A346S664_9GAMM (Methyl-accepting chemotaxis protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A346S664_9GAMM) HSP 1 Score: 348 bits (894), Expect = 7.090e-113 Identity = 212/276 (76.81%), Postives = 235/276 (85.14%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAEQDTETVRG 828 RAKSYGIFALV+GQVGYALSETLNEIYDQLTNR+SLL+PAL++ +E+SPAL ++G AI+RVDESLM+VRD LD NVITPMRLEMPW EYD+LMS QLAHYD VK AAF VV++NLR+RL+SE++QRRLI++AL+A+LLVVVYLYIGFFMSVRTAINRFSEAAR VAAGDMTTHI L NRDELGELT EFNNMTDRIAELIRSVSRTTADVDQQATRVND XXXXXXXXXXXXXXXXXXXX NAE+DTET RG Sbjct: 198 RAKSYGIFALVDGQVGYALSETLNEIYDQLTNRSSLLTPALSVVTESSPALVEKSGGAIRRVDESLMIVRDQLDQNVITPMRLEMPWQEYDELMSEQLAHYDRVKAAAFEVVNANLRSRLDSEMSQRRLIIIALVAILLVVVYLYIGFFMSVRTAINRFSEAARGVAAGDMTTHIMLHNRDELGELTAEFNNMTDRIAELIRSVSRTTADVDQQATRVNDTAAANSEAVARQMDESGQINEAMXXXXXXXXXXXXXXXXXXXXAGNAERDTETGRG 473
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: A0A2G1VAM4_9GAMM (Methyl-accepting chemotaxis protein n=1 Tax=Marinobacter guineae TaxID=432303 RepID=A0A2G1VAM4_9GAMM) HSP 1 Score: 345 bits (886), Expect = 1.120e-111 Identity = 227/276 (82.25%), Postives = 250/276 (90.58%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAEQDTETVRG 828 RAKSYG+FALVEGQVGYALSETLNE+YDQLTNR+SLLSPAL++ SE+SP L +QAG+AI RVDESL VVRD LD NVITPMRLEMPW +YD+L+S QLA +D K AAF VV++NLR+RLESE+NQR LI++AL+A+LLVVVYLY+GFFMSVRTAINRFS+AARNVAAGDMTTHI LRNRDELGELTTEFNNMTDRIAELIRSV RTTADVDQQATRVND XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NAE+DTET RG Sbjct: 198 RAKSYGMFALVEGQVGYALSETLNEVYDQLTNRSSLLSPALSVVSESSPDLVSQAGDAIARVDESLTVVRDQLDQNVITPMRLEMPWQDYDELISAQLAPFDQFKAAAFDVVEANLRSRLESEVNQRSLIIIALVAILLVVVYLYVGFFMSVRTAINRFSQAARNVAAGDMTTHIMLRNRDELGELTTEFNNMTDRIAELIRSVGRTTADVDQQATRVNDTAAANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGNAERDTETGRG 473
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: UPI001E5EFACC (methyl-accepting chemotaxis protein n=1 Tax=Marinobacter sp. F3R08 TaxID=2841559 RepID=UPI001E5EFACC) HSP 1 Score: 327 bits (837), Expect = 1.580e-104 Identity = 180/215 (83.72%), Postives = 190/215 (88.37%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQA 645 RAKSYG FALVE QVGYALSETLNEIYDQLTNR+SLLSPALALASEASPA + QAGNAIQRVDESLMVVRD LD NVITPMRLEMPW EYDDLMS QLA+YD +K AF V+D+NLR RLESE +QR LIVVA VYLYIGFFMSVRTAINRFS+AAR+VAAGDMTT ISL NRDELGELTTEFNNMTDRIAELIRSVSRTTA+VDQQA Sbjct: 182 RAKSYGTFALVESQVGYALSETLNEIYDQLTNRSSLLSPALALASEASPAFSQQAGNAIQRVDESLMVVRDQLDHNVITPMRLEMPWAEYDDLMSAQLAYYDQLKMVAFGVLDANLRTRLESEKSQRLLIVVAXXXXXXXXVYLYIGFFMSVRTAINRFSKAARSVAAGDMTTRISLPNRDELGELTTEFNNMTDRIAELIRSVSRTTAEVDQQA 396
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: UPI001C5E3FCC (methyl-accepting chemotaxis protein n=3 Tax=unclassified Marinobacter TaxID=83889 RepID=UPI001C5E3FCC) HSP 1 Score: 314 bits (805), Expect = 1.410e-99 Identity = 167/216 (77.31%), Postives = 191/216 (88.43%), Query Frame = 1 Query: 4 AKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATR 651 A++YG FALVEGQVGYALS+ LN IYD LTNR+SLL+PAL++A+EAS L+++AGN I RV+ESL +VRD LDLNV+TPMRLEMPW EYD L+ QL HYD++ A F VV+ NL RLE E+NQRRLIVVAL+A+LLVVVYLYIGFFMSVRTAINRF+EAARNVAAGDMTTHI+LRNRDELGELT+EFNNMTDRIAELIRSVS TTADVDQQA R Sbjct: 199 ARAYGTFALVEGQVGYALSDGLNAIYDGLTNRSSLLAPALSVAAEASDQLSDEAGNTITRVNESLTLVRDALDLNVVTPMRLEMPWQEYDALIRAQLEHYDELTAAIFDVVEGNLSTRLEQEVNQRRLIVVALVAILLVVVYLYIGFFMSVRTAINRFTEAARNVAAGDMTTHINLRNRDELGELTSEFNNMTDRIAELIRSVSGTTADVDQQAAR 414
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: A0A1D9GKH6_9GAMM (Methyl-accepting chemotaxis protein n=1 Tax=Marinobacter salinus TaxID=1874317 RepID=A0A1D9GKH6_9GAMM) HSP 1 Score: 310 bits (795), Expect = 4.370e-98 Identity = 162/210 (77.14%), Postives = 186/210 (88.57%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTAD 630 RA++YGIFALVEGQVGYALSETLN +YDQLTNR S+LSPAL++AS+ASP LA +A I+R++ESL+VVRD LDLNVITPMRLEMPW EYD L+ QL HYD ++T F V +NL +RLE E+NQRRLIV+AL+AVLLVVVYLY+GFFMSVRTAINRF+EAARNVAAGDMTTHI L NRDELGELT+EFNNMTDRIAEL+RSVSRTT D Sbjct: 198 RARAYGIFALVEGQVGYALSETLNGLYDQLTNRDSMLSPALSVASDASPRLAGEASGTIERINESLVVVRDALDLNVITPMRLEMPWKEYDGLIKAQLEHYDALQTVIFDTVSANLSSRLEREVNQRRLIVIALVAVLLVVVYLYVGFFMSVRTAINRFTEAARNVAAGDMTTHIRLSNRDELGELTSEFNNMTDRIAELVRSVSRTTGD 407
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: A0A0J7J7T8_9GAMM (Methyl-accepting chemotaxis protein n=1 Tax=Marinobacter subterrani TaxID=1658765 RepID=A0A0J7J7T8_9GAMM) HSP 1 Score: 309 bits (792), Expect = 1.220e-97 Identity = 163/211 (77.25%), Postives = 190/211 (90.05%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADV 633 RAKSYG+FALVEGQVGYALS+ LNEIYDQLTNR+SLLSPAL++ SE+SP L +AG AI+ VD+SL+ VRD LD NVITPMRL+MPW EYD L++ QL HY+ K+AAF VV++NLR+RL+S+INQR LI++ALIA+LLVVVYLYIGFF+SVRTAI RFS+AAR+VAAGDMT HI LRNRDELG+LTTEFNNMTDRIAELIRSVSRTTADV Sbjct: 198 RAKSYGMFALVEGQVGYALSDALNEIYDQLTNRSSLLSPALSVVSESSPGLVEKAGEAIRGVDQSLVHVRDVLDQNVITPMRLDMPWQEYDQLVAEQLGHYEQTKSAAFDVVEANLRSRLDSKINQRSLIIIALIAILLVVVYLYIGFFLSVRTAIKRFSQAARSVAAGDMTAHIHLRNRDELGQLTTEFNNMTDRIAELIRSVSRTTADV 408
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: A1TZ83_MARN8 (Methyl-accepting chemotaxis sensory transducer n=20 Tax=Marinobacteraceae TaxID=2887365 RepID=A1TZ83_MARN8) HSP 1 Score: 308 bits (788), Expect = 4.810e-97 Identity = 165/219 (75.34%), Postives = 184/219 (84.02%), Query Frame = 1 Query: 4 AKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVND 660 A+SYGIFALVEGQVGYALSETLNEIYDQLTNR+SLLSPAL++A EASP LA A A+ R +ESLM VRD LDLNVITPMRLE+PW E+D+ +S Q+ +YD + F VV NL RL + QR LI+VALIAV+LVVVYLY+GFFMSVR AINRFSEAARNVAAGDMTTHI L NRDELGELT+EFNNMTDRIAEL+RSV TTADVDQQA RVND Sbjct: 199 ARSYGIFALVEGQVGYALSETLNEIYDQLTNRSSLLSPALSVAVEASPQLAESASGALTRTEESLMTVRDELDLNVITPMRLELPWQEFDETVSAQMGYYDTLSDRIFDVVAGNLEDRLARQTGQRTLILVALIAVMLVVVYLYVGFFMSVRIAINRFSEAARNVAAGDMTTHIRLNNRDELGELTSEFNNMTDRIAELVRSVGSTTADVDQQAVRVND 417
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Match: A0A072NHX8_9GAMM (Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) n=1 Tax=Marinobacter nitratireducens TaxID=1137280 RepID=A0A072NHX8_9GAMM) HSP 1 Score: 305 bits (782), Expect = 3.680e-96 Identity = 165/219 (75.34%), Postives = 186/219 (84.93%), Query Frame = 1 Query: 1 RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPALANQAGNAIQRVDESLMVVRDHLDLNVITPMRLEMPWTEYDDLMSGQLAHYDDVKTAAFSVVDSNLRARLESEINQRRLIVVALIAVLLVVVYLYIGFFMSVRTAINRFSEAARNVAAGDMTTHISLRNRDELGELTTEFNNMTDRIAELIRSVSRTTADVDQQATRVN 657 +A+SYG FALV GQVGYALSE LN+ YDQLTN+ S LS AL++A +ASPALA +AG + RV ESL VVRD LDLN+ITPMRLEMPW+EY +L+ GQL HYD + F +V++NL A+LE NQR LIVVALIAVLLVVVYLY+GFFMSVRTAINRFSEAAR VAAGDMTT I LRN+DELGELT EFNNMTDRIAELIRSVSRTTADVDQQA+RVN Sbjct: 197 QARSYGTFALVNGQVGYALSEILNQTYDQLTNQASRLSSALSVAKDASPALAQRAGGTMDRVGESLTVVRDVLDLNIITPMRLEMPWSEYSELIRGQLDHYDKLNNTIFDLVEANLAAKLEQARNQRMLIVVALIAVLLVVVYLYVGFFMSVRTAINRFSEAARGVAAGDMTTRIQLRNKDELGELTAEFNNMTDRIAELIRSVSRTTADVDQQASRVN 415 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10284.1.1 >prot_C-australica_Contig_10284.1.1 ID=prot_C-australica_Contig_10284.1.1|Name=mRNA_C-australica_Contig_10284.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=276bp RAKSYGIFALVEGQVGYALSETLNEIYDQLTNRTSLLSPALALASEASPAback to top mRNA from alignment at C-australica_Contig_10284:1..828+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10284.1.1 ID=mRNA_C-australica_Contig_10284.1.1|Name=mRNA_C-australica_Contig_10284.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10284:1..828+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10284:1..828+ >mRNA_C-australica_Contig_10284.1.1 ID=mRNA_C-australica_Contig_10284.1.1|Name=mRNA_C-australica_Contig_10284.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10284:1..828+ (Chrysoparadoxa australica CS_1217)back to top |