mRNA_C-australica_Contig_1027.5.4 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1027.5.4
Unique NamemRNA_C-australica_Contig_1027.5.4
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1027.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1027contigC-australica_Contig_1027:13054..16874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2067
Hectar predicted targeting categorysignal peptide
Exons14
Cds size1431
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1027.5.4prot_C-australica_Contig_1027.5.4Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1027 13490..16674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586763.7219176-UTR-C-australica_Contig_1027:13053..134891682586763.7219176-UTR-C-australica_Contig_1027:13053..13489Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1027 13054..13489 -
1682586763.894526-UTR-C-australica_Contig_1027:16674..168741682586763.894526-UTR-C-australica_Contig_1027:16674..16874Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1027 16675..16874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586763.7305183-CDS-C-australica_Contig_1027:13489..136351682586763.7305183-CDS-C-australica_Contig_1027:13489..13635Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 13490..13635 -
1682586763.7386193-CDS-C-australica_Contig_1027:13887..139631682586763.7386193-CDS-C-australica_Contig_1027:13887..13963Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 13888..13963 -
1682586763.7514453-CDS-C-australica_Contig_1027:14106..143611682586763.7514453-CDS-C-australica_Contig_1027:14106..14361Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 14107..14361 -
1682586763.765188-CDS-C-australica_Contig_1027:14488..145871682586763.765188-CDS-C-australica_Contig_1027:14488..14587Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 14489..14587 -
1682586763.7748237-CDS-C-australica_Contig_1027:14724..147901682586763.7748237-CDS-C-australica_Contig_1027:14724..14790Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 14725..14790 -
1682586763.794144-CDS-C-australica_Contig_1027:14923..149811682586763.794144-CDS-C-australica_Contig_1027:14923..14981Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 14924..14981 -
1682586763.80855-CDS-C-australica_Contig_1027:15067..151761682586763.80855-CDS-C-australica_Contig_1027:15067..15176Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 15068..15176 -
1682586763.8201175-CDS-C-australica_Contig_1027:15382..154611682586763.8201175-CDS-C-australica_Contig_1027:15382..15461Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 15383..15461 -
1682586763.8305764-CDS-C-australica_Contig_1027:15635..157351682586763.8305764-CDS-C-australica_Contig_1027:15635..15735Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 15636..15735 -
1682586763.8404098-CDS-C-australica_Contig_1027:15872..159371682586763.8404098-CDS-C-australica_Contig_1027:15872..15937Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 15873..15937 -
1682586763.8504744-CDS-C-australica_Contig_1027:16063..161901682586763.8504744-CDS-C-australica_Contig_1027:16063..16190Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 16064..16190 -
1682586763.8602352-CDS-C-australica_Contig_1027:16289..163541682586763.8602352-CDS-C-australica_Contig_1027:16289..16354Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 16290..16354 -
1682586763.869814-CDS-C-australica_Contig_1027:16422..165161682586763.869814-CDS-C-australica_Contig_1027:16422..16516Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 16423..16516 -
1682586763.8794858-CDS-C-australica_Contig_1027:16582..166741682586763.8794858-CDS-C-australica_Contig_1027:16582..16674Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1027 16583..16674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1027.5.4

>prot_C-australica_Contig_1027.5.4 ID=prot_C-australica_Contig_1027.5.4|Name=mRNA_C-australica_Contig_1027.5.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=477bp
MKALARLISLAAMELGLLSAFISLATQFWLRRAAVPYLVRSPHLTLMTSM
ASKSLIIAIIVQTMLGWEDVHVSGRVPLYVSYALTPMIMYPYLMRVVRFI
TITSETLRQKFSFLLSWDACWLVLLVVEVFFLAVAAVMDVANWHHCYRSA
DDQGTCVMWLEWQIWLVLVSTFFIPGAFLVKVLLRRKDKFYVYLELTICG
VVCLSTFALYQIVNVSMVQHRLIAVPANTHYILFPALLVMAFMPLSMPRL
VQWWEEHPLRGGKAEPASKDGKEWWEHRPPRRDAKVVPASQDNQIWRKTY
GSTETIMGQPEIAALYAKVIERNLCWESWEFIESVISSVESPPYKSCDCK
LLTCQANAYKTKVPQRTAEASHEDLARILHKFVAPGALFQINIACKMARK
LLKNKDKQVFMELTTEQQGDILSAPRQEMLQLLDMNVVQQLHKHPDFVNA
CVKVAEEEEWRKRDEEDERMSRHLTL*
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mRNA from alignment at C-australica_Contig_1027:13054..16874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1027.5.4 ID=mRNA_C-australica_Contig_1027.5.4|Name=mRNA_C-australica_Contig_1027.5.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3821bp|location=Sequence derived from alignment at C-australica_Contig_1027:13054..16874- (Chrysoparadoxa australica CS_1217)
GGGGAAGCACAAAAGCGGTTCGAAGACCATTTAACACAACCCTCCTCCAA
TAGGTGCCCGGGGCAATTGATTAGCTAAGGGAGAGGCGCAAAGAGCAGGC
AAAAAGCCGTTTCTAGTGGGGAGCATTAATTGCCGCCGAACTCCCCTAGG
GATGAGAGGATAGAGTGTAGGTCTATGCTACTTCCTAGACGAAGAGGGGG
ATGAAAGCGCTCGCTAGATTAATTAGCTTGGCCGCGATGGAGTTGGGACT
CCTCTCGGCTTTCATCTCATTGGCAACGCAATTTTGGCTAAGGTAGAGCA
GAGCCAACCCCGTTAAACAGTAACAGTATAACATACCACCACTCTCCCTC
CTAAACAGACGTGCGGCGGTGCCTTACTTGGTGCGATCCCCTCACCTGAC
ATTAATGACTTCCATGGCATCAAAGTCATTAATCATAGCCATTATAGTTC
AGGTAACAATCTCCTCTTACGCTAGACGGGCTCCTTTCCCATTCCTTAGC
GTGCTTTGCTTTCCTACCAGACCATGTTGGGGTGGGAGGACGTCCATGTT
TCTGGCAGAGTACCTTTGTATGTGTCTTATGCACTGTAAGTGGCGACAGC
CGTTCCTACCTCTTGCCCTCCCAACATACATAACAAAGGCTACTAAATAA
CTCGCTGTAACAACAAACCACCTGCTGCTCCCAGGACCCCGATGATAATG
TACCCCTACCTCATGAGAGTGGTACGATTCATAACCATCACTTCAGAAAC
GCTTCGGCAGAAATTTTCGTTTCTTCTCTCCTGGGATGCTTGCTGGCTTG
TACTTCTTGTGGTAGGCAAGGCGAAAGCTGGGTTATGCCACATCTTTGAT
TCCAACCATGATGATTCATTACTAACGACCAAACGCTGACAACAAATGCC
GGTCCAATGATCAATCCTGCCTGACTGTACTTGAAAGGTTGAGGTGTTTT
TTCTAGCAGTGGCTGCCGTTATGGACGTGGCAAACTGGCACCACTGCTAT
CGGTATGCCAGCCAATCATCCAGTAGAAACATTAGAGTAACCTGTACCCA
CCTCACCAAAACTTGTAGGGATATGTAAGTGGGGCGACAGAGTTCACGAT
CGCCTACTTTCTGCTTGACTGCCAGTCCGTATACCACAGGTCAGCTGATG
ACCAGGGGACCTGCGTGATGTGGCTGGAGTGGCAAATATGGCTTGTTTTG
GTAAGCACGTTTTTCATTCCGGGCGCATTTTTAGTCAAGGTATGTAATGT
AATGTAACGTAACTACGTTCGCATGTGCTCTGACTTGCTCCATATTTTAC
CTGCCCAGTTCCAGTTCACCACAAGCTCTCCATCACACAGGGATTCTGCC
GTCTGCCCCTGCAAACTAACTAGTCCTGAGGTATTGCTTGATCGCTCTCC
CCACTTCACTCAGGTGCTGCTCAGAAGAAAAGATAAATTCTATGTGTATT
TGGAGCTTACCATTTGCGGAGTTGTGTGCCTTTCGACATTCGGTACGCCT
TCTTCCTCCCTTCACACCTTGCTTAGCTTAAGCTTCCTACTCCCTCAAGC
ACTTGTTGCATCACCTACTCACCTACTCGAGCACGGCATCACGAACACAC
ACTTTGGTCGGTCAAGCATGGCGGCTCCTTTCCTTTCCCTCTCTCTCTGC
CCCGCTCACTGCAAACTGACGACACGTTCCCCGCATACCCTCAAACAGCG
TTGTATCAGATTGTCAATGTGAGCATGGTGCAGCATCGTCTCATTGCAGT
TCCTGCCAACACCCATTACATTCTGTTCCCCGCGCTGCTGGTCATGGCGT
TCATGCCGTAAGTGTACCCGTCTCCCAAAGCCATCTCACCGCGTACGTAC
ATCCCACCCCGCAAGGAGCTGACTCTGATCCCATGGTTTGAAGGCTCTCC
ATGCCGAGGCTTGTGCAATGGTGGGAAGAGCATCCACTGAGGGGAGGAAA
GGTGGGAAGGCCCGCCGGGCTAATAAGAAGAGCATCCAGCATGCTCATGC
ACAGCTGCTGCTGTTTATTAGTCAGCCCCATCGGGTACATGCATGTCCTG
CCTCTGACGTGATTTCTTGTCCTTACCCCCCTAGGCTGAGCCAGCTAGCA
AGGATGGCAAGGAGTGGTGGGAGCATCGCCCTCCTAGGAGAGATGCAAAG
GTGTCACATCCTGCTGACCTAATTCCACCCAGTGTCTTCACTCCTTAGAG
CTGTTAGCTAGCCGACTGATCAGTTATCAGTTGCATGCACAACACTGCCT
CTGAAGCAGCATATTTACTTACCATTGCAAACCCCAGGTTGTCCCTGCTT
CTCAAGATAATCAGATTTGGAGAAAAACATATGGGTCAACAGAGACCATA
ATGGGTCAGCCAGAGATAGCCGCGTTGTATGCAAAGGTATATGAGATGAT
AGGTGAATCGCGTCGAGAAAGCTGGAGGCAGGTCTTGACGCCTTCAACAC
CATCGACCATGGCCTGCACCTACTGATACCTCATCTCTCCCTCTTCCATG
ACTTATAACTTAGGTTATTGAGCGGAACTTGTGCTGGGAGTCTTGGGAAT
TCATTGAATCGGTAATAAGCAGCGTAGAATCCCCCCCTTACAAGTCATGT
GACTGCAAGCTTTTGACATGTCAGGCAAACGCCTACAAGACTAAGGTGCC
CCAGCGCACAGCGGAAGCAAGCCATGAGGACCTCGCGAGGATCCTCCACA
AGTTTGTCGCTCCCGGGGCTCTCTTCCAGATCAACATTGCCTGCAAGATG
GCGCGCAAGCTGCTCAAGGCAACGCAAACCCTGCAGATTGGTGACCTCTG
ATGCGCAGGCAGCTTCAGTGCTGCTCAGCCAAGCTGTTGCTTGACTTGCT
CCTCTAGCCGCACAGTTTCCTTCCTTCTCGATTCTTATTCCTTCCTCTTC
ACCCCCCACAGAACAAGGACAAGCAGGTCTTCATGGAGTTGACCACGGAG
CAACAGGGTGACATACTCAGCGCGCCAAGACAAGAAAGTAAGGCTGTAGG
TAGCACTTAGGCTACCACTTTTAGCTAAGTAGGTGTGACGAGTGGCCAAT
GGCCAGTGACGAGAAAGGTGTCATGAGTAGGATGCGAGCGGAAGCAAGGC
CCTTCAGTTTGAGGGTGTGTGCAGTGCAGCGTGTTGGGCGGTGAACTGGG
ATGCCTGGCCCTGCAGTTTCCATTGGCGCGATGCAAGGACGGTGGAGGTG
CTCACGACCGTCCCCTGCGCCGGCCCTCTCCTGCCACAGTGCTGCAGCTT
CTGGACATGAACGTGGTCCAGCAGCTGCACAAGCACCCGGACTTTGTCAA
CGCCTGCGTAAAGGTAGCAGAGGAAGAGGAGTGGCGCAAGCGTGACGAGG
AGGACGAAAGAATGAGCCGGCACTTAACCCTCTAGCCTTTCTCCAGTTTT
TTTTTGCCCTCTCTAGCCTTCTAGCTGCCGCGGCATTTCTCTCAATCCTT
AGACATTAACTGCGCCAGTTGGGGTTTGCGATTTGATTTGGCTGGGCGAG
TGAGGGCCCCAACCCTTTCGCTGGCTTGGCATGGGTGCCGTCATGCTGGC
ACCGATGCATCAATGCAACACCCCCACGGCCAGCTTCCCAATAGATTTAC
AGCCACTTTCTGCAAAGTTTATAGTATCACTTAATGATGTGCCCTTCGCT
GGCGAGGCTCATTTGCCACATTACCAAAAGTATTCCGGCCTTTCTCTAAT
GCATTAATAACCCCCCATGTGAAAGAAGAGCACATCATGACACACGCTCC
AGTATATTATGGCCGCCTGATGCAGGTTCACGAAGTAACTTCTCATACTG
GAGACACATAATTAATTGCAG
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Coding sequence (CDS) from alignment at C-australica_Contig_1027:13054..16874-

>mRNA_C-australica_Contig_1027.5.4 ID=mRNA_C-australica_Contig_1027.5.4|Name=mRNA_C-australica_Contig_1027.5.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1431bp|location=Sequence derived from alignment at C-australica_Contig_1027:13054..16874- (Chrysoparadoxa australica CS_1217)
ATGAAAGCGCTCGCTAGATTAATTAGCTTGGCCGCGATGGAGTTGGGACT
CCTCTCGGCTTTCATCTCATTGGCAACGCAATTTTGGCTAAGACGTGCGG
CGGTGCCTTACTTGGTGCGATCCCCTCACCTGACATTAATGACTTCCATG
GCATCAAAGTCATTAATCATAGCCATTATAGTTCAGACCATGTTGGGGTG
GGAGGACGTCCATGTTTCTGGCAGAGTACCTTTGTATGTGTCTTATGCAC
TGACCCCGATGATAATGTACCCCTACCTCATGAGAGTGGTACGATTCATA
ACCATCACTTCAGAAACGCTTCGGCAGAAATTTTCGTTTCTTCTCTCCTG
GGATGCTTGCTGGCTTGTACTTCTTGTGGTTGAGGTGTTTTTTCTAGCAG
TGGCTGCCGTTATGGACGTGGCAAACTGGCACCACTGCTATCGGTCAGCT
GATGACCAGGGGACCTGCGTGATGTGGCTGGAGTGGCAAATATGGCTTGT
TTTGGTAAGCACGTTTTTCATTCCGGGCGCATTTTTAGTCAAGGTGCTGC
TCAGAAGAAAAGATAAATTCTATGTGTATTTGGAGCTTACCATTTGCGGA
GTTGTGTGCCTTTCGACATTCGCGTTGTATCAGATTGTCAATGTGAGCAT
GGTGCAGCATCGTCTCATTGCAGTTCCTGCCAACACCCATTACATTCTGT
TCCCCGCGCTGCTGGTCATGGCGTTCATGCCGCTCTCCATGCCGAGGCTT
GTGCAATGGTGGGAAGAGCATCCACTGAGGGGAGGAAAGGCTGAGCCAGC
TAGCAAGGATGGCAAGGAGTGGTGGGAGCATCGCCCTCCTAGGAGAGATG
CAAAGGTTGTCCCTGCTTCTCAAGATAATCAGATTTGGAGAAAAACATAT
GGGTCAACAGAGACCATAATGGGTCAGCCAGAGATAGCCGCGTTGTATGC
AAAGGTTATTGAGCGGAACTTGTGCTGGGAGTCTTGGGAATTCATTGAAT
CGGTAATAAGCAGCGTAGAATCCCCCCCTTACAAGTCATGTGACTGCAAG
CTTTTGACATGTCAGGCAAACGCCTACAAGACTAAGGTGCCCCAGCGCAC
AGCGGAAGCAAGCCATGAGGACCTCGCGAGGATCCTCCACAAGTTTGTCG
CTCCCGGGGCTCTCTTCCAGATCAACATTGCCTGCAAGATGGCGCGCAAG
CTGCTCAAGAACAAGGACAAGCAGGTCTTCATGGAGTTGACCACGGAGCA
ACAGGGTGACATACTCAGCGCGCCAAGACAAGAAATGCTGCAGCTTCTGG
ACATGAACGTGGTCCAGCAGCTGCACAAGCACCCGGACTTTGTCAACGCC
TGCGTAAAGGTAGCAGAGGAAGAGGAGTGGCGCAAGCGTGACGAGGAGGA
CGAAAGAATGAGCCGGCACTTAACCCTCTAG
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