mRNA_C-australica_Contig_1027.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A835ZBG2_9STRA (Phosphotyrosine protein phosphatase I superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG2_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.580e-58 Identity = 98/159 (61.64%), Postives = 121/159 (76.10%), Query Frame = 1 Query: 142 KSVLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 K VLFVCLGNICRSP+AEAVF V+++ A + IDSCGTGGG WY GG S+HEG+ +DARMT+AAA+RG+ LTSISRP+ DL++FDLI+GMDGAN++AV+EA+ +WG E LA KLR MT+YC + K +ATVPDPYYGG GFE V Sbjct: 33 KKVLFVCLGNICRSPSAEAVFRSVVEKA-EKADNFVIDSCGTGGGMRGWYRDGGRSYHEGDPADARMTEAAAQRGVHLTSISRPMRPSDLDEFDLIIGMDGANKQAVIEAAHYWGKKE---LAEAKLRNMTSYCTKHK---SATVPDPYYGGPEGFEKV 184
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A061R5H5_9CHLO (Protein-tyrosine phosphatase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5H5_9CHLO) HSP 1 Score: 183 bits (465), Expect = 9.410e-54 Identity = 95/183 (51.91%), Postives = 124/183 (67.76%), Query Frame = 1 Query: 130 APPQKSVLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWG--GDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETVTLT---ACLSVFTSCASL 663 A + SVLFVCLGNICRSPTAEAV T V+++G++ S + +DSCGTGGG+ NWY+ GG S+HEGE +D RMT+ AA+RG+ LTS SRPL DL +FD I+GMD +N ++ A+ +W G ++ RGKL+ MT+YCR KH VPDPYYGG +GFE V AC + C + Sbjct: 80 ADRKTSVLFVCLGNICRSPTAEAVLTAVVKEAGLE-SRFVVDSCGTGGGNPNWYKEGGWSYHEGEDADPRMTEVAARRGVHLTSKSRPLKPDDLNRFDYIIGMDSSNMASIQVAADYWASKGYDIPKNYRGKLKTMTSYCR--KHKGETEVPDPYYGGTQGFERVLDLLDDACSGLLQDCMQM 259
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: W7TSN9_9STRA (Protein tyrosine phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSN9_9STRA) HSP 1 Score: 181 bits (460), Expect = 9.430e-53 Identity = 99/180 (55.00%), Postives = 125/180 (69.44%), Query Frame = 1 Query: 79 NLHLSKAFVCPMNMSSSAPPQKSVLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 +LH+S P A KSVLFVCLGNICRSPTAEAVF V++ G +S IDSCGTGGG+ WY+ GG S+HEG+ +D+RM AA+KRGI +TS SRPL A+D++ FD ++ MDGAN+ AV+EA+ +WG + A K+RLMT YC +K +R TVPDPYYGG GFE V Sbjct: 53 SLHMSNLDPAP------ASAAKSVLFVCLGNICRSPTAEAVFKSVVEREG-KSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKTQTAAK---KIRLMTEYCTINKGAR--TVPDPYYGGADGFEKV 220
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A7S3A8J4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A8J4_9RHOD) HSP 1 Score: 180 bits (456), Expect = 1.220e-52 Identity = 95/167 (56.89%), Postives = 124/167 (74.25%), Query Frame = 1 Query: 118 MSSSAPPQKSVLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 MSSS Q SVLFVCLGNICRSPTAEA+F V++ G A+ + IDSCGTGGG+ +W+ GG S+HEG+SSD+RM + AAKRGI LTS SRPLN +DLEKFD I+GMD +N + +++A+++WG + ++ LA+ K LM +Y +S+ VPDPYYGG GFE V Sbjct: 62 MSSS---QSSVLFVCLGNICRSPTAEAMFKTVVEREG-KAATYEIDSCGTGGGNPDWFTEGGWSYHEGDSSDSRMMQTAAKRGIALTSRSRPLNKEDLEKFDRIIGMDSSNYKEIMKAAQYWGPEYLD-LAKQKTSLMLDYS---SNSKGKPVPDPYYGGPDGFEKV 220
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A7J7PNS1_9CHLO (Phosphotyrosine protein phosphatase I superfamily n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PNS1_9CHLO) HSP 1 Score: 180 bits (457), Expect = 3.330e-52 Identity = 91/164 (55.49%), Postives = 117/164 (71.34%), Query Frame = 1 Query: 139 QKSVLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEAL----ARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 ++SVLFVCLGNICRSPTAEA+F V+++G+ A+++ IDSCGTGGGS NWY GG S+HEG+ SD+RMT AA KRG++LTS SRPL DL++FD I+GMD N R +L+A+ +W + + R K LMT YC + K A VPDPYYGG GF+ V Sbjct: 67 KRSVLFVCLGNICRSPTAEAMFRSVVEKAGL-ANQFDIDSCGTGGGSSNWYLPGGFSYHEGDESDSRMTAAAVKRGVRLTSTSRPLQPSDLKRFDYIIGMDPRNVRDILKAASYWAEQDQQLPRLDEVRSKTSLMTRYCSKAK--AADEVPDPYYGGPAGFDLV 227
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A2V0PHL2_9CHLO (Tyrosine phosphatase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHL2_9CHLO) HSP 1 Score: 176 bits (447), Expect = 6.850e-52 Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 1 Query: 148 VLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEAL-----ARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 VLFVCLGNICRSPTAEA+F V++ G+ A + IDSCGTGGG+ WY+ GG S+HEG+ +D RMT AAA RG++LTS SRPL D +F IVGMDGAN RA+L A+ FW + + ARG++ LMT+YC E + VPDPYYGG +GFETV Sbjct: 18 VLFVCLGNICRSPTAEAMFRAVVEREGV-AGAFDIDSCGTGGGASGWYKPGGFSYHEGDPADPRMTAAAAGRGVRLTSRSRPLAPADFGRFKYIVGMDGANVRAILTAADFWAANGSADVPPAEEARGQVSLMTSYCTETEG--VTEVPDPYYGGPQGFETV 176
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A5D6YDH1_9STRA (LMWPc domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDH1_9STRA) HSP 1 Score: 176 bits (445), Expect = 7.590e-52 Identity = 95/176 (53.98%), Postives = 116/176 (65.91%), Query Frame = 1 Query: 145 SVLFVCLGNICRSPTAEAVFT----QKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETVT---LTACLSVFTS 651 SVLFVCLGNICRSP EAVF QK SG+ A E+ +DSCGTGGGS NWY+ G +FHEGE SDARMTK A KRG LTS +R L +D+E FD I+ M+ N AVLEA+ WGG E LA K+++MT+YC K + A VPDP+Y G GF+ V AC+ ++ S Sbjct: 3 SVLFVCLGNICRSPAGEAVFQAIVEQKAASSGVRADEFRVDSCGTGGGSANWYKPNGFAFHEGERSDARMTKEAKKRGYSLTSRARSLTPRDIEDFDYIICMESKNRAAVLEAAEAWGGAESRELAAQKVKMMTSYCT--KFTTATRVPDPWYEG--GFDNVLDLLEDACVGLYES 174
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A7S0BPS6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BPS6_9RHOD) HSP 1 Score: 176 bits (447), Expect = 1.190e-51 Identity = 89/160 (55.62%), Postives = 118/160 (73.75%), Query Frame = 1 Query: 139 QKSVLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 Q SVLFVCLGNICRSPTAEA+F V++ G A+ + IDSCGTGGG+ +W+ GG S+HEG+ SD+RM + AA RGI LTS SRPLN +DLEKFD I+GMD +N + +++A+++WG + ++ LA+ K LM +Y H++ VPDPYYGG GFE V Sbjct: 41 QSSVLFVCLGNICRSPTAEAMFRTVVERDG-KAAAYEIDSCGTGGGNPDWFTEGGWSYHEGDPSDSRMMQTAANRGIALTSRSRPLNKEDLEKFDRIIGMDSSNYKEIMKAAQYWGPEYLD-LAKKKTSLMLDYS---SHNKGKPVPDPYYGGPDGFEKV 195
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A7S2XZB6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZB6_9STRA) HSP 1 Score: 173 bits (438), Expect = 4.220e-50 Identity = 89/157 (56.69%), Postives = 112/157 (71.34%), Query Frame = 1 Query: 148 VLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 V+FVCLGNICRSPTAEAVF +KVQ +G ++ I+SCGTGGGS +WY G S+HEGES D RMT AA+ RGI L SRPL +DL+ FD I+ MDG+N++A+ EA+ +WG A A K ++MT+YC K +VPDPYYGG +GFETV Sbjct: 62 VIFVCLGNICRSPTAEAVFDKKVQDAGRQ-DQFFIESCGTGGGSADWYMQSGFSYHEGESPDRRMTAAASNRGITLCGASRPLTPEDLDIFDYIIAMDGSNKQAITEAASYWG---KSAQAAQKTKMMTSYC---KKFDMKSVPDPYYGGAQGFETV 211
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Match: A0A0G4EHG9_VITBC (LMWPc domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHG9_VITBC) HSP 1 Score: 173 bits (438), Expect = 4.340e-50 Identity = 91/165 (55.15%), Postives = 111/165 (67.27%), Query Frame = 1 Query: 124 SSAPPQKSVLFVCLGNICRSPTAEAVFTQKVQQSGIDASEWTIDSCGTGGGSGNWYEVGGMSFHEGESSDARMTKAAAKRGIKLTSISRPLNAKDLEKFDLIVGMDGANERAVLEASRFWGGDEMEALARGKLRLMTNYCREDKHSRAATVPDPYYGGDRGFETV 618 SS + SVLFVCLGNICRSPTAEAV + Q G+ IDSCGTGGGS NWY+ G S+HEGE SD RM+ AA KRGI+LTS SRPL D ++FDL++GM+ N + + A+R WG ++ R K LMT+YCRE + VPDPYYGG +GFE V Sbjct: 48 SSPSSEPSVLFVCLGNICRSPTAEAVLRKLAQDKGLRVE---IDSCGTGGGSDNWYKPDGFSYHEGEPSDERMSTAAKKRGIRLTSRSRPLRPDDFDRFDLVIGMEEKNRQEIFRAARAWG--RLDEAVR-KTVLMTDYCRE--YGDVTAVPDPYYGGQKGFEKV 204 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1027.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1027.2.1 >prot_C-australica_Contig_1027.2.1 ID=prot_C-australica_Contig_1027.2.1|Name=mRNA_C-australica_Contig_1027.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=210bp MNLVLLLLVILSVNLHLSKAFVCPMNMSSSAPPQKSVLFVCLGNICRSPTback to top mRNA from alignment at C-australica_Contig_1027:4104..5944- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1027.2.1 ID=mRNA_C-australica_Contig_1027.2.1|Name=mRNA_C-australica_Contig_1027.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1841bp|location=Sequence derived from alignment at C-australica_Contig_1027:4104..5944- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1027:4104..5944- >mRNA_C-australica_Contig_1027.2.1 ID=mRNA_C-australica_Contig_1027.2.1|Name=mRNA_C-australica_Contig_1027.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=630bp|location=Sequence derived from alignment at C-australica_Contig_1027:4104..5944- (Chrysoparadoxa australica CS_1217)back to top |