mRNA_C-australica_Contig_1027.1.4 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: A0A1X7VGP3_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VGP3_AMPQE) HSP 1 Score: 67.4 bits (163), Expect = 1.220e-9 Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1 Query: 2101 LSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
+ P + PL+WWK +P+L VARK+LC SS SER+FS GN++T KRN L P NVE +MLL
Sbjct: 57 MQYPTLHIDQCPLEWWKVE--AYRMPVLLNVARKYLCICASSVASERMFSKGGNIVTAKRNGLKPENVERLMLL 128
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: UPI001A7E8F6C (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Simochromis diagramma TaxID=43689 RepID=UPI001A7E8F6C) HSP 1 Score: 68.9 bits (167), Expect = 1.780e-8 Identity = 100/418 (23.92%), Postives = 170/418 (40.67%), Query Frame = 1 Query: 1090 LRRFKGATRFFKKSSTALEELKAAQHLVNLKKLVPVQEVSPHWHSVLDMAERWLLLKPALFAYGNAKRDANKSRKCLNKDVEALTAKGSEADWASLSLLVDVLVPFKKIQQF*EGEQYPAIGMV-PFMSLGLWNKFHQAKKKMTSASKLHTNSDPTKAAAKQMLDLMGDMEKCMKKD---NKINEGIHALCKSGWVGTFCDPRMKDLKTLRN--TDQVIKWVQDEAI-IVGKEEKAQQLAELSKLAAKARKEKEQRRADTGDVYMGVQDSAEDLQELQCPKSFAMYEEVMRDTGFHVDEEPSDRAIALGRQPKCNKERDYEQEIRDIEKEITLRAANQVHQYKNLSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
L R + T FF++S+TA +LK Q L+ L + ++ W+S DM ER+L +PA+ A A S + + E T SE+D +V L P K E P + ++ P S K+ ++ + PT + D++ + +D +NE ++ W+ + DPR KDL L T + + D + ++ KEE Q+ E K + KE D + + Q C VD LG + + D+ AA ++ +Y++ P+ L +PL WWK + ++ P L +VAR FLC +S +ERVFS++G+++ +R+ L +V+ ++ L
Sbjct: 74 LGRIRRVTAFFRRSTTASNQLKQKQCLLQLPAHRLITDIITTWNSSYDMIERFLEQQPAICA-------ALLSAEVRKSEKEIFTL--SESDITCAEEVVRALKPMKDATLVMSEESMPTLSIIAPLHS------------KLVMGAQESVDDTPT----------VRDIKTAIAEDLGKRYVNER-----ETLWMASTVDPRFKDLPFLSEAETSETYSRLLDTVVTVIKKEENQQKNEETDKQVEEENATKEAHHPHIKDNFDSIPRPPLKRQRTSCAL---------------VD--------LLGATFASTSDNTAPKSEHDV-------AAAEIKRYRD-ETPLP-LTGNPLSWWKDHE--QEYPQLSKVARSFLCIPGTSVSAERVFSSAGDIVNAQRSVLRADHVDQLVFL 421
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: J9KCH6_ACYPI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KCH6_ACYPI) HSP 1 Score: 67.0 bits (162), Expect = 2.680e-8 Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 1 Query: 2062 TLRAANQVHQYKNLSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
T++ NQ K LS+P L +PLQWWK + + P + ++A +LC +S PSER+FS +GN+IT+ R+ LSP + E ++ L
Sbjct: 193 TVQDLNQKELEKYLSLPSVGLNCNPLQWWKTFQS--EFPTVAKLATNYLCIQGTSVPSERIFSCTGNVITDHRSSLSPDHAEELIFL 277
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: A0A6P8TX40_GYMAC (zinc finger BED domain-containing protein 1-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8TX40_GYMAC) HSP 1 Score: 68.6 bits (166), Expect = 2.990e-8 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1 Query: 2101 LSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
LS+P + +M PL+WW++ G + P + ++ARK+LC +SAPSERVFS GN++T +R L P V+ ++ L
Sbjct: 430 LSVPNADSEMDPLEWWQNHDG--NFPRVSQLARKYLCIPATSAPSERVFSTGGNIVTCQRATLKPEKVDKLIFL 501
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: UPI0017856BD2 (zinc finger BED domain-containing protein 4-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI0017856BD2) HSP 1 Score: 63.9 bits (154), Expect = 3.560e-8 Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 2095 KNLSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
K L +P+ + PL WWK+S+ K+ P L +A K+LC SS SERVFSASGN+ RN+L P N E ++ +
Sbjct: 74 KYLQLPLISRQEDPLTWWKYSR--KEYPNLFTLAMKYLCAPPSSVNSERVFSASGNIYVENRNRLLPDNAEMLLFV 147
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: A0A0A1WDS8_ZEUCU (Transposable element Hobo transposase n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WDS8_ZEUCU) HSP 1 Score: 63.2 bits (152), Expect = 5.750e-8 Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 Query: 2137 LQWWKHSKGVKD--LPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
L+WW GV + PLL +VA KFL SSAP+ERVFS +GN+IT KRN+L P +V+N++ L
Sbjct: 82 LKWW----GVNENRYPLLSKVALKFLTIPASSAPAERVFSLAGNVITEKRNRLGPTSVDNLLFL 141
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: UPI00148F68CA (zinc finger BED domain-containing protein 1-like n=3 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F68CA) HSP 1 Score: 67.8 bits (164), Expect = 6.460e-8 Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 2101 LSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
LS+P + + PL WWK V++ P+L +VARK+LC +S PSERVFSASG++++ +R++LS NV + L
Sbjct: 555 LSLPAIDAEADPLSWWKTH--VEEFPMLSKVARKYLCIPATSVPSERVFSASGHILSPQRSRLSTENVNMLTFL 626
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: A0A820WCL7_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820WCL7_9BILA) HSP 1 Score: 62.0 bits (149), Expect = 7.650e-8 Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 1 Query: 2077 NQVHQYKNLSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLLKGMWGPCQEFLQTHSKNASL 2382
+++ QY +P +K +PLQ+W PLLK +ARK +S+ +ER+FS SG ++ N+R +LSP V+NM++++ ++ L T N S+
Sbjct: 26 DELDQYLEADLPSSIVKENPLQFWSGEFAASKFPLLKCLARKLFSIPATSSETERLFSYSGIILNNRRQRLSPDQVDNMLVIRS----ARKVLTTLKNNDSI 123
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: UPI0013F19603 (LOW QUALITY PROTEIN: zinc finger BED domain-containing protein 1 n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F19603) HSP 1 Score: 67.0 bits (162), Expect = 1.180e-7 Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1 Query: 2101 LSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
L+ P ++ M PLQWWK + + LPLL ++A+K+LC +S SERVFS +G++++ KRN L+P NV M L
Sbjct: 598 LAEPQIDINMDPLQWWKSRE--QKLPLLAQLAKKYLCVPSTSVASERVFSVAGDVVSRKRNCLAPENVATNMFL 669
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Match: UPI000B9380F6 (uncharacterized protein LOC111028171 n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B9380F6) HSP 1 Score: 62.4 bits (150), Expect = 1.780e-7 Identity = 28/82 (34.15%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 2077 NQVHQYKNLSIPMEELKMSPLQWWKHSKGVKDLPLLKEVARKFLCKMVSSAPSERVFSASGNLITNKRNKLSPANVENMMLL 2322
+++H+YK+++ + PL WWK+++ + P + ++A K+L ++ +S P ER+FS +G +IT +RN+LSP V ++ L
Sbjct: 68 DELHKYKSMTAKISH-NQDPLLWWKYNERI--YPAVSQMANKYLSEVATSVPCERLFSEAGQIITKRRNRLSPDRVNQLLFL 146 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1027.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1027.1.4 >prot_C-australica_Contig_1027.1.4 ID=prot_C-australica_Contig_1027.1.4|Name=mRNA_C-australica_Contig_1027.1.4|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=313bp MVPFMSLGLWNKFHQAKKKMTSASKLHTNSDPTKAAAKQMLDLMGDMEKCback to top mRNA from alignment at C-australica_Contig_1027:617..3840- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_1027.1.4 ID=mRNA_C-australica_Contig_1027.1.4|Name=mRNA_C-australica_Contig_1027.1.4|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3224bp|location=Sequence derived from alignment at C-australica_Contig_1027:617..3840- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_1027:617..3840- >mRNA_C-australica_Contig_1027.1.4 ID=mRNA_C-australica_Contig_1027.1.4|Name=mRNA_C-australica_Contig_1027.1.4|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=939bp|location=Sequence derived from alignment at C-australica_Contig_1027:617..3840- (Chrysoparadoxa australica CS_1217)back to top |