mRNA_C-australica_Contig_10267.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: A0A222E1L1_9RHOB (HTH-type transcriptional repressor RspR n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E1L1_9RHOB) HSP 1 Score: 438 bits (1126), Expect = 5.070e-155 Identity = 225/229 (98.25%), Postives = 225/229 (98.25%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTDP 687 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEK L TRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLE QK STDP Sbjct: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKMLCTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEAQKVSTDP 229
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: A9DTV8_9RHOB (Transcriptional regulator, GntR family protein n=1 Tax=Sulfitobacter indolifex HEL-45 TaxID=391624 RepID=A9DTV8_9RHOB) HSP 1 Score: 373 bits (957), Expect = 2.880e-129 Identity = 189/229 (82.53%), Postives = 203/229 (88.65%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTDP 687 MM + +QAI RKSLHQELVDRLQPLII GEL PGSKVPEK L TRFGVSRTPLREALKVLAS+GL+RLEPNRGAWVT VT+ EVEEVFPVLGALEALSGELACKSIT EI AVR LH MI SY+ RDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANM+EGRWYAAVQEHE ILKFL+++DG RLA TLLDHM++KR SVVQWLE Q ++P Sbjct: 1 MMQNAPAQAITRKSLHQELVDRLQPLIISGELTPGSKVPEKLLCTRFGVSRTPLREALKVLASDGLIRLEPNRGAWVTLVTVGEVEEVFPVLGALEALSGELACKSITTEEINAVRRLHAQMIESYDTRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMTEGRWYAAVQEHENILKFLIDKDGRRLASTLLDHMESKRVSVVQWLEAQNEPSEP 229
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: A0A1I1WVF4_9RHOB (Transcriptional regulator, GntR family n=1 Tax=Sulfitobacter brevis TaxID=74348 RepID=A0A1I1WVF4_9RHOB) HSP 1 Score: 370 bits (949), Expect = 4.760e-128 Identity = 187/229 (81.66%), Postives = 201/229 (87.77%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTDP 687 MM + AI RKSLHQELVDRLQPLII GEL PG+KVPEK L TRFGVSRTPLREALKVLAS+GLVRLEPNRGAWVT VT+ EVEEVFPVLGALEALSGELACK +T E AVR LH MI+SYE RDLD+YFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANM+EGRWYAAVQEHE ILKFL+++DG LARTLLDHMDAKRASV+QWLE Q ++P Sbjct: 1 MMQNLTPHAITRKSLHQELVDRLQPLIISGELIPGTKVPEKMLCTRFGVSRTPLREALKVLASDGLVRLEPNRGAWVTSVTVGEVEEVFPVLGALEALSGELACKCVTSDETDAVRKLHAQMIKSYETRDLDTYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMTEGRWYAAVQEHENILKFLIDKDGKSLARTLLDHMDAKRASVIQWLEMQNEPSEP 229
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: A0A3T0MZV9_9RHOB (GntR family transcriptional regulator n=1 Tax=Parasedimentitalea marina TaxID=2483033 RepID=A0A3T0MZV9_9RHOB) HSP 1 Score: 356 bits (914), Expect = 1.020e-122 Identity = 177/228 (77.63%), Postives = 199/228 (87.28%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTD 684 M T + I RKSLH ELVDRLQPLIIGGEL PGSKVPEK L RFGVSRTP+REALKVLAS+GL+RLEPNRGAWVT+VTI EVEEVFPVLGALEALSGELACKSITD EIA V LH+ +++SYE RDLD+YF+ NQKIHRAILLAARNDTLTTSCQALSLRMQ+ARYLANMS+GRW+ AVQEH+ ILK+LV RDG +L +TLLDH++AK+ SVVQWL Q +STD Sbjct: 1 MSQETAKETITRKSLHLELVDRLQPLIIGGELVPGSKVPEKELCARFGVSRTPMREALKVLASDGLIRLEPNRGAWVTRVTIGEVEEVFPVLGALEALSGELACKSITDEEIAIVSALHDQLMQSYENRDLDAYFSTNQKIHRAILLAARNDTLTTSCQALSLRMQKARYLANMSDGRWFDAVQEHKMILKYLVARDGKQLGKTLLDHIEAKKTSVVQWLRAQDSSTD 228
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: UPI0011B45303 (GntR family transcriptional regulator n=1 Tax=Phaeobacter marinintestinus TaxID=1492905 RepID=UPI0011B45303) HSP 1 Score: 353 bits (905), Expect = 2.390e-121 Identity = 181/228 (79.39%), Postives = 198/228 (86.84%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTD 684 MM T +Q I RKSLH ELVDRLQ LII ELAPG+KVPEK L +FGVSRTPLREALKVLAS GLVRLEPNRGAWVTQVT EVEEVFPVLGALEALSGELACK ITDAEI VR LHE M++SYE RDLD+YF+INQKIHRAIL+AARN TLTTSCQALSLRMQRARYLANM+EGRWY AVQEHE ILK+LV RDG +LA TLLDHMDAKR SVV+WL+ ++A+ + Sbjct: 1 MMQATETQTIARKSLHHELVDRLQMLIINAELAPGTKVPEKLLCDQFGVSRTPLREALKVLASVGLVRLEPNRGAWVTQVTEDEVEEVFPVLGALEALSGELACKRITDAEIEEVRALHEQMMQSYENRDLDAYFSINQKIHRAILMAARNSTLTTSCQALSLRMQRARYLANMTEGRWYDAVQEHEKILKYLVARDGPKLAATLLDHMDAKRISVVRWLQAREATPE 228
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: A0A369TT26_9RHOB (GntR family transcriptional regulator n=1 Tax=Thalassococcus profundi TaxID=2282382 RepID=A0A369TT26_9RHOB) HSP 1 Score: 352 bits (903), Expect = 4.830e-121 Identity = 182/230 (79.13%), Postives = 197/230 (85.65%), Query Frame = 1 Query: 4 MNHTGSQ-AIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTDPA 690 M GSQ I RKSLHQELVDRLQ +IIGGEL PG+KVPEKTL FGVSRTPLREALKVLAS+GLVRLEPNRGAWVT VT+SEV EVFPVLGALEALSGELACKSITDAEI VR LHE+M++SYE RDLD YFAINQKIHRAIL AARN+TLTTSC ALS RMQRARYLANM+EGRW AVQEHE IL++LV RDG LARTLLDHM++KR SVV+WLE + A D A Sbjct: 1 MKDAGSQFTITRKSLHQELVDRLQVMIIGGELVPGAKVPEKTLCATFGVSRTPLREALKVLASDGLVRLEPNRGAWVTTVTVSEVNEVFPVLGALEALSGELACKSITDAEIETVRHLHEEMLQSYEDRDLDRYFAINQKIHRAILDAARNETLTTSCHALSFRMQRARYLANMTEGRWRTAVQEHEKILQYLVARDGPNLARTLLDHMESKRVSVVKWLESRDAMPDSA 230
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: A0A6P0CES7_9RHOB (FCD domain-containing protein n=2 Tax=Sulfitobacter sediminilitoris TaxID=2698830 RepID=A0A6P0CES7_9RHOB) HSP 1 Score: 351 bits (901), Expect = 9.730e-121 Identity = 179/221 (81.00%), Postives = 195/221 (88.24%), Query Frame = 1 Query: 22 QAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTD 684 Q I RKSLH ELVDRLQ LII ELAPGSKVPEK L +FGVSRTPLREALKVLAS+GLVRLEPNRGAWVTQVT EVEEVFPVLGALEALSGELACK ITD EI VR LH+ M++SYE RDLD+YF+INQKIHRAILLAARN TLTTSCQALSLRMQRARYLANM+EGRWY AVQEHE IL+FL+ RDG+ LA TLL HMDAKRASVV+WL+ ++A+TD Sbjct: 8 QTITRKSLHHELVDRLQTLIINAELAPGSKVPEKVLCDQFGVSRTPLREALKVLASDGLVRLEPNRGAWVTQVTEEEVEEVFPVLGALEALSGELACKHITDPEIEEVRALHDQMMQSYENRDLDAYFSINQKIHRAILLAARNRTLTTSCQALSLRMQRARYLANMTEGRWYDAVQEHEKILEFLIARDGANLASTLLQHMDAKRASVVKWLQTREAATD 228
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: UPI00165328FF (GntR family transcriptional regulator n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI00165328FF) HSP 1 Score: 350 bits (898), Expect = 2.790e-120 Identity = 180/228 (78.95%), Postives = 194/228 (85.09%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKASTD 684 M + Q I RKSLH ELVDRLQ LII EL PGSKVPEKTL FGVSRTPLREALKVLAS+GLVRLEPNRGAWVTQVT+SEVEEVFPVLGALEALSGELACK I+DAEI VR LH MI SYE+RDLD+YF INQKIHRAILLAARN TLTTSCQALSLRMQRARYLANM+EGRWY AVQEHE ILK+L RD LA+TLL+HMDAKR SV++WLE Q+A T+ Sbjct: 1 MTHAPAPQTILRKSLHHELVDRLQNLIINAELEPGSKVPEKTLCDTFGVSRTPLREALKVLASDGLVRLEPNRGAWVTQVTVSEVEEVFPVLGALEALSGELACKHISDAEIEQVRALHAQMIESYERRDLDAYFTINQKIHRAILLAARNATLTTSCQALSLRMQRARYLANMTEGRWYEAVQEHENILKYLSARDAKALAQTLLEHMDAKRLSVIRWLEAQEARTE 228
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: UPI000469991B (GntR family transcriptional regulator n=1 Tax=Sulfitobacter noctilucae TaxID=1342302 RepID=UPI000469991B) HSP 1 Score: 350 bits (897), Expect = 3.820e-120 Identity = 176/224 (78.57%), Postives = 198/224 (88.39%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQK 672 MM+ TG I+RKSLH ELVDRLQPLIIGGEL PGSKVPEK L RFGVSRTP+REALKVLAS+GL+RLEPNRGAWVT VTISEVEEVFPVLGALEALSG+LAC+SIT AE+ V LH MI SYE+RDLD+YF+INQKIHRAIL+AARNDTLT SCQALSLRMQRARYLANM+EGRWY AVQEHE IL++L+ RDG LA+TLL+HM+AKR SVV+WL+ Q+ Sbjct: 1 MMSDTGPSPIQRKSLHLELVDRLQPLIIGGELVPGSKVPEKELCDRFGVSRTPMREALKVLASDGLIRLEPNRGAWVTIVTISEVEEVFPVLGALEALSGKLACESITPAELDEVSDLHAQMIASYERRDLDAYFSINQKIHRAILMAARNDTLTASCQALSLRMQRARYLANMTEGRWYDAVQEHERILQYLLARDGENLAQTLLEHMEAKRQSVVRWLQAQE 224
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Match: UPI0018A2A71C (GntR family transcriptional regulator n=1 Tax=Roseobacter sp. MH60115 TaxID=2785324 RepID=UPI0018A2A71C) HSP 1 Score: 349 bits (896), Expect = 5.230e-120 Identity = 182/226 (80.53%), Postives = 194/226 (85.84%), Query Frame = 1 Query: 1 MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSRTPLREALKVLASEGLVRLEPNRGAWVTQVTISEVEEVFPVLGALEALSGELACKSITDAEIAAVRGLHEDMIRSYEKRDLDSYFAINQKIHRAILLAARNDTLTTSCQALSLRMQRARYLANMSEGRWYAAVQEHETILKFLVERDGSRLARTLLDHMDAKRASVVQWLEDQKAS 678 M HT SQ I RKSLH ELVDRLQPLII EL PG+K+PEK L RFGVSRTPLREALKVLAS+GLVRLEPNRGAWVTQVT EV+EVFPVLGALEALSGELACK ITDAEI VR LH MIRSYE RDLD+YF++NQKIHRAILLAARN TLTTSCQALSLRMQRARYLANMSEGRWY AVQEHE IL+ LV RDG LA TLL HMDAKRASVV+WL+ Q+ + Sbjct: 1 MTLHT-SQTILRKSLHHELVDRLQPLIINSELKPGTKIPEKQLCERFGVSRTPLREALKVLASDGLVRLEPNRGAWVTQVTQEEVDEVFPVLGALEALSGELACKHITDAEIEEVRALHAQMIRSYESRDLDAYFSVNQKIHRAILLAARNATLTTSCQALSLRMQRARYLANMSEGRWYDAVQEHEKILQCLVARDGPNLAATLLHHMDAKRASVVKWLQSQETT 225 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10267.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_10267.1.1 >prot_C-australica_Contig_10267.1.1 ID=prot_C-australica_Contig_10267.1.1|Name=mRNA_C-australica_Contig_10267.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=231bp MMNHTGSQAIKRKSLHQELVDRLQPLIIGGELAPGSKVPEKTLGTRFGVSback to top mRNA from alignment at C-australica_Contig_10267:14..706- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_10267.1.1 ID=mRNA_C-australica_Contig_10267.1.1|Name=mRNA_C-australica_Contig_10267.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=693bp|location=Sequence derived from alignment at C-australica_Contig_10267:14..706- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_10267:14..706- >mRNA_C-australica_Contig_10267.1.1 ID=mRNA_C-australica_Contig_10267.1.1|Name=mRNA_C-australica_Contig_10267.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=693bp|location=Sequence derived from alignment at C-australica_Contig_10267:14..706- (Chrysoparadoxa australica CS_1217)back to top |